AT3G01640

GHMP kinases N terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010934
Physical Location & Seq
Forward (+)
239333 .. 241492
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01640.2

Sequence Viewer

Length: 1089 bp
ATGGATCCGAATTCCACGGTTTCCGGCGATGGTCAGGCGACGGCGGCGATAGAGCATCGGTCCTTCGCTCGGATCGGATTTCTCGGAAACCCGAGCGATGTATACTTCGGGCGAACCATATCATTGACCATCGGAAACTTCTGGGCATCCGTGAAGCTGGAGCCATCGGAGCATCTCGTAATCAAGCCTCATCCATTCCATGATCTCGTCCAGTTCACCTCTCTCGACCATCTCCTGAATCGTTTGCAAAATGAAGGATACTACGGTGGGGTAAGGTTGCTAATGGCGATATGTAAAGTATTCCGTAACTATTGCAAAGAGAATGACATTCAACTTCACCAAGCCAACTTCTCTCTTTCTTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTGCCATCGTATCCGCTGCCCTTAACTGCCTTCTCGACTTCTACAATGTCAGGCATTTGATCAAAGTACAAGTCCGCCCTAACATTGTTCTCAGTGCTGAGAAAGAACTTGGCATTGTTGCTGGTCTTCAGGACAGGGTTGCTCAGGTCTATGGTGGTCTTGTTCACATGGATTTTAGCAAGGAGCACATGGATAAATTGGGGCATGGGATTTACACTCCTATGGATATCAGTCTCCTCCCTCCTCTGCATCTCATCTATGCTGAGAATCCGAGCGACTCAGGGAAGGTACATAGTATGGTTCGGCAAAGATGGTTAGACGGTGATGAGTTTATAATCTCATCAATGAAAGAAGTCGGAAGTCTAGCAGAAGAAGGTCGAACTGCATTACTCAACAAGGACCATTCCAAACTTGTGGAACTCATGAACCTTAATTTCGACATTCGGAGGCGGATGTTTGGGGATGAATGCTTAGGAGCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGTGCAGCCTCAAAGTTCACTGGAAGTGGAGGAGCAGTGGTGGTTTTCTGCCCTGAAGGTCCATCTCAGGTGAAACTTCTGGAAGAAGAATGCAGGAAAGCGGGATTTACGCTTCAGCCGGTAAAAATTGCGCCTTCATGTTTGAATGATTCTGACATTCAGACCTTATGA

Protein Analysis

362

Amino Acids

40.08

Weight (kDa)

6.11

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 116 - 203 3.2e-09 GHMP kinases N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01640 AT3G01640 AT5G14470
fragaria_vesca FvH4_6g51800 FvH4_6g51800
malus_domestica MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica Prupe.3G293800_v2.0.a1
pyrus_communis pycom111g01930 pycom17g01930
rosa_chinensis RchiOBHm_Chr2g0173281
rosa_laevigata RLG00000022176
rosa_multiflora Rmu_sc0010961.1_g000007
rosa_roxburghii Rroxscaffold_2G00079080
rosa_rugosa Rorug02G0567000
rosa_samantha Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana Rw2G053140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 737
AccI GTMKAC 1 cut(s) 102
AciI CCGC 5 cut(s) 44, 417, 478, 853, 1019
AclWI GGATC 2 cut(s) 12, 80
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 3 cut(s) 515, 993, 1016
AfaI GTAC 2 cut(s) 471, 693
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 332, 1063
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 2 cut(s) 12, 80
Ama87I CYCGRG 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 419, 923
ApoI RAATTY 1 cut(s) 10
ArsI GACNNNNNNTTYG 4 cut(s) 376, 408, 459, 491
AspA2I CCTAGG 1 cut(s) 377
AspLEI GCGC 1 cut(s) 1051
AspS9I GGNCC 3 cut(s) 60, 802, 977
AsuHPI GGTGA 4 cut(s) 208, 329, 737, 1000
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 3 cut(s) 60, 802, 977
AvrII CCTAGG 1 cut(s) 377
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 406, 935
BccI CCATC 8 cut(s) 23, 137, 172, 237, 416, 708, 889, 988
BceAI ACGGC 1 cut(s) 57
BciVI GTATCC 2 cut(s) 251, 424
BclI TGATCA 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 3 cut(s) 378, 402, 767
BfuI GTATCC 2 cut(s) 251, 424
BisI GCNGC 3 cut(s) 45, 420, 924
BlnI CCTAGG 1 cut(s) 377
BlsI GCNGC 3 cut(s) 46, 421, 925
Bme18I GGWCC 3 cut(s) 60, 802, 977
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 60, 802, 977
BmiI GGNNCC 2 cut(s) 6, 162
BmsI GCATC 4 cut(s) 64, 155, 181, 661
BpiI GAAGAC 1 cut(s) 521
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 2 cut(s) 546, 874
BsaJI CCNNGG 2 cut(s) 15, 377
BsaXI ACNNNNNCTCC 6 cut(s) 904, 934, 939, 942, 969, 972
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 2 cut(s) 211, 943
Bse3DI GCAATG 1 cut(s) 888
BseDI CCNNGG 2 cut(s) 15, 377
BseGI GGATG 4 cut(s) 146, 190, 861, 871
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 6 cut(s) 492, 508, 560, 657, 696, 998
BseNI ACTGG 2 cut(s) 211, 943
BseRI GAGGAG 3 cut(s) 629, 636, 963
BseXI GCAGC 2 cut(s) 406, 935
BsgI GTGCAG 1 cut(s) 942
BsiHKAI GWGCWC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 2 cut(s) 24, 1037
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 641
BsmI GAATGC 2 cut(s) 875, 1013
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 4 cut(s) 4, 72, 202, 462
BspACI CCGC 5 cut(s) 44, 417, 478, 853, 1019
BspCNI CTCAG 6 cut(s) 493, 507, 559, 658, 695, 997
BspHI TCATGA 1 cut(s) 825
BspLI GGNNCC 2 cut(s) 6, 162
BspPI GGATC 2 cut(s) 12, 80
BsrDI GCAATG 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 2 cut(s) 211, 943
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 2 cut(s) 15, 377
BssMI GATC 4 cut(s) 4, 72, 202, 462
BssNAI GTATAC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 19, 266, 725
BstDEI CTNAG 7 cut(s) 494, 501, 546, 666, 682, 874, 984
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 4 cut(s) 146, 190, 861, 871
BstHHI GCGC 1 cut(s) 1051
BstKTI GATC 4 cut(s) 7, 75, 205, 465
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 4 cut(s) 4, 72, 202, 462
BstMWI GCNNNNNNNGC 3 cut(s) 44, 169, 388
BstV1I GCAGC 2 cut(s) 406, 935
BstV2I GAAGAC 1 cut(s) 521
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 817
BstYI RGATCY 1 cut(s) 4
BstZ17I GTATAC 1 cut(s) 103
BsuI GTATCC 2 cut(s) 251, 424
BtgI CCRYGG 1 cut(s) 15
BtgZI GCGATG 2 cut(s) 42, 111
BtsCI GGATG 4 cut(s) 146, 190, 861, 871
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 3 cut(s) 502, 936, 960
CciI TCATGA 1 cut(s) 825
CfoI GCGC 1 cut(s) 1051
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 3 cut(s) 60, 802, 977
Csp6I GTAC 2 cut(s) 470, 692
CviAII CATG 6 cut(s) 200, 571, 592, 608, 826, 1056
CviJI RGCY 7 cut(s) 157, 163, 187, 344, 391, 926, 1036
CviKI_1 RGCY 7 cut(s) 157, 163, 187, 344, 391, 926, 1036
CviQI GTAC 2 cut(s) 470, 692
DdeI CTNAG 7 cut(s) 494, 501, 546, 666, 682, 874, 984
DpnI GATC 4 cut(s) 6, 74, 204, 464
DpnII GATC 4 cut(s) 4, 72, 202, 462
EciI GGCGGA 2 cut(s) 467, 868
Eco130I CCWWGG 1 cut(s) 377
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 3 cut(s) 60, 802, 977
Eco57I CTGAAG 3 cut(s) 515, 993, 1016
Eco88I CYCGRG 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 10
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 6 cut(s) 203, 574, 595, 611, 829, 1059
FatI CATG 6 cut(s) 199, 570, 591, 607, 825, 1055
FauI CCCGC 1 cut(s) 1012
FbaI TGATCA 1 cut(s) 462
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 45, 420, 924
FokI GGATG 4 cut(s) 133, 177, 868, 878
Fsp4HI GCNGC 3 cut(s) 45, 420, 924
FspBI CTAG 3 cut(s) 378, 402, 767
GlaI GCGC 1 cut(s) 1050
GluI GCNGC 3 cut(s) 45, 420, 924
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 2 cut(s) 24, 1037
HhaI GCGC 1 cut(s) 1051
Hin1II CATG 6 cut(s) 203, 574, 595, 611, 829, 1059
Hin6I GCGC 1 cut(s) 1049
HinP1I GCGC 1 cut(s) 1049
HinfI GANTC 4 cut(s) 238, 670, 680, 1067
HpaII CCGG 2 cut(s) 24, 1037
HphI GGTGA 4 cut(s) 208, 329, 737, 1000
Hpy166II GTNNAC 4 cut(s) 103, 216, 568, 936
Hpy188III TCNNGA 6 cut(s) 224, 235, 437, 533, 826, 998
Hpy8I GTNNAC 4 cut(s) 103, 216, 568, 936
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 7 cut(s) 73, 248, 443, 682, 770, 968, 1062
HpyCH4III ACNGT 3 cut(s) 19, 266, 725
HpyCH4V TGCA 6 cut(s) 247, 315, 652, 788, 923, 1011
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 169, 388
HpyF3I CTNAG 7 cut(s) 494, 501, 546, 666, 682, 874, 984
Hsp92II CATG 6 cut(s) 203, 574, 595, 611, 829, 1059
HspAI GCGC 1 cut(s) 1049
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 4 cut(s) 4, 72, 202, 462
LmnI GCTCC 5 cut(s) 160, 169, 586, 878, 950
Lsp1109I GCAGC 2 cut(s) 406, 935
LweI GCATC 4 cut(s) 64, 155, 181, 661
MaeI CTAG 3 cut(s) 378, 402, 767
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 6, 74, 204, 464
MboI GATC 4 cut(s) 4, 72, 202, 462
MboII GAAGA 4 cut(s) 521, 785, 1013, 1016
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 4 cut(s) 10, 599, 835, 1044
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 739
MnlI CCTC 9 cut(s) 198, 229, 650, 654, 657, 843, 906, 937, 941
MseI TTAA 2 cut(s) 426, 834
MslI CAYNNNNRTG 2 cut(s) 623, 893
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 2 cut(s) 24, 1037
Mva1269I GAATGC 2 cut(s) 875, 1013
MwoI GCNNNNNNNGC 3 cut(s) 44, 169, 388
NdeII GATC 4 cut(s) 4, 72, 202, 462
NlaIII CATG 6 cut(s) 203, 574, 595, 611, 829, 1059
NlaIV GGNNCC 2 cut(s) 6, 162
PagI TCATGA 1 cut(s) 825
PctI GAATGC 2 cut(s) 875, 1013
PfeI GAWTC 3 cut(s) 238, 670, 1067
PkrI GCNGC 3 cut(s) 46, 421, 925
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PsiI TTATAA 1 cut(s) 737
PspN4I GGNNCC 2 cut(s) 6, 162
PspPI GGNCC 3 cut(s) 60, 802, 977
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 471, 693
RsaNI GTAC 2 cut(s) 470, 692
RseI CAYNNNNRTG 2 cut(s) 623, 893
SaqAI TTAA 2 cut(s) 426, 834
SatI GCNGC 3 cut(s) 45, 420, 924
Sau3AI GATC 4 cut(s) 4, 72, 202, 462
Sau96I GGNCC 3 cut(s) 60, 802, 977
SchI GAGTC 1 cut(s) 674
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 4 cut(s) 64, 155, 181, 661
SinI GGWCC 3 cut(s) 60, 802, 977
SmiMI CAYNNNNRTG 2 cut(s) 623, 893
Sse9I AATT 4 cut(s) 10, 599, 835, 1044
SsiI CCGC 5 cut(s) 44, 417, 478, 853, 1019
SspMI CTAG 3 cut(s) 378, 402, 767
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 19, 266, 725
TaqI TCGA 4 cut(s) 225, 438, 781, 840
TaqII GACCGA 1 cut(s) 48
TasI AATT 4 cut(s) 10, 599, 835, 1044
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 3 cut(s) 238, 670, 1067
Tru1I TTAA 2 cut(s) 426, 834
Tru9I TTAA 2 cut(s) 426, 834
TscAI CASTG 3 cut(s) 502, 943, 960
TseI GCWGC 2 cut(s) 419, 923
TspDTI ATGAA 6 cut(s) 267, 764, 842, 882, 899, 1044
TspGWI ACGGA 2 cut(s) 139, 293
TspRI CASTG 3 cut(s) 502, 943, 960
VpaK11BI GGWCC 3 cut(s) 60, 802, 977
XapI RAATTY 1 cut(s) 10
XmaJI CCTAGG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 3 cut(s) 378, 402, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.