Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

4662775 .. 4664681

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGATCCGAATCCTAAACCGGCGATTTCTGGCAAAGATAATGGCGTGTTCGAGCATCGCTCGTTTGCTAGAATCGGGTTTCTTGGAAACCCTAGCGATGTTTACTTCGGTCGTACGATTTCATTTACCATTGGTAATTTCTGGGCGTGGGCTAAGCTCGAACCATCTGATCATCTCTTGATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGATTCTCTCGATAATCTCGTTTATCGATTGGAAAATGATGGATACTATGGAGGTGTAAGGTTACTAATGGCGATTTGCAAAGTATTCCGAAACTATTGCAAAGAAAATGGTATACAACTTCATGACAAAAACTTCACTCTTTCTTATGATACCAATATCCCAAGACAGACGGGGCTTTCAGGTTCTAGTGCAATTGTATCTGCTGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCAGAATCGAAGTCCGACCTAACCTTATTCTTAATGCGGAGAAAGAACTTGGTATTGTTGCTGGTCTTCAAGACCGTGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAGTAAAGAGCATATGGATAAAGTTGGATATGGGATATACACTATAATGGATATCAATCTTCTTCCTCCTCTGCATCTCATCTATGCTGAGAATCCTAGTGACTCTGGCAAGGTACATAGCACGGTTCGTAGAAGGTGGTTAGACGGTGATGAGTTTATAATATCATCAATGGCAGAAATTGCAAAATTAGCTGAAGAAGGTCGAACTGCATTGCTTAAGAAAGATTACTCCAACCTCAAGGAACTCATGAACCGTAACTTCGATCTTCGAAGGAGTATGTTTGGAGATGAATGTTTGGGAGCTATGAACATAGAGATGGTGGAAGTGGCACGTAAGATCGGCGCAGCTGCAAAGTTCACTGGAAGCGGAGGAGCTGTGGTGGTTTTCTGCCCTGAGGGGCCATCTCAGGTCAAACTTCTAGAAGAAGAATGTCGGAAATCTGGATTTATCGTTGAGCCAGTAAAGCTTGTGCCTACCCGCCTCAGTAGTTCTGATATTAAGACATTATCAAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042546 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0047940 GO:0071554 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

366

Amino Acids

40.86

Weight (kDa)

6.76

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	99 - 187	1.8e-09	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	263 - 328	9.4e-06	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	328
AciI	CCGC	3 cut(s)	500, 948, 1060
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	2 cut(s)	115, 696
AflII	CTTAAG	1 cut(s)	797
AgsI	TTSAA	1 cut(s)	533
AluBI	AGCT	7 cut(s)	157, 429, 773, 884, 929, 956, 1048
AluI	AGCT	7 cut(s)	157, 429, 773, 884, 929, 956, 1048
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	980
ApeKI	GCWGC	4 cut(s)	419, 429, 926, 929
AspLEI	GCGC	1 cut(s)	926
AspS9I	GGNCC	1 cut(s)	980
AsuHPI	GGTGA	1 cut(s)	740
AsuII	TTCGAA	1 cut(s)	850
AxyI	CCTNAGG	1 cut(s)	975
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	4 cut(s)	406, 416, 916, 938
BccI	CCATC	4 cut(s)	172, 248, 892, 991
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciVI	GTATCC	1 cut(s)	251
BclI	TGATCA	2 cut(s)	169, 180
BfaI	CTAG	5 cut(s)	69, 93, 402, 678, 1001
BfrI	CTTAAG	1 cut(s)	797
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	4 cut(s)	420, 430, 927, 930
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	4 cut(s)	421, 431, 928, 931
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	2 cut(s)	6, 981
BmsI	GCATC	2 cut(s)	64, 664
BpiI	GAAGAC	1 cut(s)	521
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	2 cut(s)	531, 803
Bsa29I	ATCGAT	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	914
BsaBI	GATNNNNATC	2 cut(s)	9, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	942, 945, 972, 975
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	3 cut(s)	211, 946, 1040
Bse21I	CCTNAGG	1 cut(s)	975
Bse3DI	GCAATG	1 cut(s)	791
Bse8I	GATNNNNATC	2 cut(s)	9, 636
BseCI	ATCGAT	1 cut(s)	241
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	2 cut(s)	9, 636
BseMI	GCAATG	1 cut(s)	791
BseMII	CTCAG	4 cut(s)	660, 966, 1001, 1078
BseNI	ACTGG	3 cut(s)	211, 946, 1040
BseRI	GAGGAG	2 cut(s)	639, 966
BseXI	GCAGC	4 cut(s)	406, 416, 916, 938
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	982
BshVI	ATCGAT	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	20
BsiWI	CGTACG	1 cut(s)	113
BsnI	GGCC	1 cut(s)	982
Bsp119I	TTCGAA	1 cut(s)	850
Bsp143I	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	3 cut(s)	500, 948, 1060
BspANI	GGCC	1 cut(s)	982
BspCNI	CTCAG	4 cut(s)	661, 967, 1000, 1077
BspDI	ATCGAT	1 cut(s)	241
BspHI	TCATGA	2 cut(s)	337, 828
BspLI	GGNNCC	2 cut(s)	6, 981
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	850
BspTI	CTTAAG	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	791
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	211, 946, 1040
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
BssNAI	GTATAC	1 cut(s)	329
Bst1107I	GTATAC	1 cut(s)	329
Bst4CI	ACNGT	4 cut(s)	539, 706, 728, 836
BstAFI	CTTAAG	1 cut(s)	797
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	850
BstDEI	CTNAG	6 cut(s)	153, 425, 669, 975, 987, 1064
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	926
BstKTI	GATC	6 cut(s)	7, 172, 183, 205, 847, 921
BstMBI	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	761, 770, 1045
BstV1I	GCAGC	4 cut(s)	406, 416, 916, 938
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	329
Bsu15I	ATCGAT	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	975
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	982
BsuTUI	ATCGAT	1 cut(s)	241
BtgZI	GCGATG	2 cut(s)	41, 111
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	939
CciI	TCATGA	2 cut(s)	337, 828
CfoI	GCGC	1 cut(s)	926
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	980
ClaI	ATCGAT	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	114, 695
CviAII	CATG	5 cut(s)	200, 338, 574, 829, 1098
CviQI	GTAC	2 cut(s)	114, 695
DdeI	CTNAG	6 cut(s)	153, 425, 669, 975, 987, 1064
DpnI	GATC	6 cut(s)	6, 171, 182, 204, 846, 920
DpnII	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	795
Eco81I	CCTNAGG	1 cut(s)	975
EcoRV	GATATC	1 cut(s)	634
FaeI	CATG	5 cut(s)	203, 341, 577, 832, 1101
FatI	CATG	5 cut(s)	199, 337, 573, 828, 1097
FauI	CCCGC	1 cut(s)	1067
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	2 cut(s)	169, 180
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	420, 430, 927, 930
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	420, 430, 927, 930
FspBI	CTAG	5 cut(s)	69, 93, 402, 678, 1001
GlaI	GCGC	1 cut(s)	925
GluI	GCNGC	4 cut(s)	420, 430, 927, 930
HaeIII	GGCC	1 cut(s)	982
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	926
Hin1II	CATG	5 cut(s)	203, 341, 577, 832, 1101
Hin6I	GCGC	1 cut(s)	924
HinP1I	GCGC	1 cut(s)	924
HindIII	AAGCTT	1 cut(s)	1046
HinfI	GANTC	6 cut(s)	10, 72, 218, 468, 673, 683
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	740
Hpy166II	GTNNAC	4 cut(s)	103, 329, 571, 939
Hpy188I	TCNGA	7 cut(s)	9, 169, 305, 467, 479, 1017, 1075
Hpy188III	TCNNGA	8 cut(s)	178, 224, 338, 437, 533, 829, 1001, 1023
Hpy8I	GTNNAC	4 cut(s)	103, 329, 571, 939
HpyAV	CCTTC	4 cut(s)	443, 708, 773, 846
HpyCH4III	ACNGT	4 cut(s)	539, 706, 728, 836
HpyCH4IV	ACGT	1 cut(s)	913
HpyCH4V	TGCA	7 cut(s)	294, 315, 407, 655, 764, 791, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	761, 770, 1045
HpyF3I	CTNAG	6 cut(s)	153, 425, 669, 975, 987, 1064
HpySE526I	ACGT	1 cut(s)	913
Hsp92II	CATG	5 cut(s)	203, 341, 577, 832, 1101
HspAI	GCGC	1 cut(s)	924
Ksp22I	TGATCA	2 cut(s)	169, 180
Kzo9I	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
LmnI	GCTCC	2 cut(s)	881, 953
Lsp1109I	GCAGC	4 cut(s)	406, 416, 916, 938
LweI	GCATC	2 cut(s)	64, 664
MaeI	CTAG	5 cut(s)	69, 93, 402, 678, 1001
MaeII	ACGT	1 cut(s)	913
MaeIII	GTNAC	3 cut(s)	276, 680, 836
MalI	GATC	6 cut(s)	6, 171, 182, 204, 846, 920
MboI	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
MboII	GAAGA	7 cut(s)	521, 632, 635, 788, 839, 1016, 1019
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	136, 408, 759, 767
MlyI	GAGTC	1 cut(s)	677
MmeI	TCCRAC	4 cut(s)	502, 586, 837, 995
MnlI	CCTC	8 cut(s)	198, 260, 657, 660, 827, 944, 970, 1073
MseI	TTAA	3 cut(s)	495, 798, 1080
MslI	CAYNNNNRTG	2 cut(s)	626, 896
MspA1I	CMGCKG	1 cut(s)	929
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	761, 770, 1045
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
NlaIII	CATG	5 cut(s)	203, 341, 577, 832, 1101
NlaIV	GGNNCC	2 cut(s)	6, 981
NmuCI	GTSAC	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	850
PagI	TCATGA	2 cut(s)	337, 828
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 231
PfeI	GAWTC	5 cut(s)	10, 72, 218, 468, 673
Pfl23II	CGTACG	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	421, 431, 928, 931
PleI	GAGTC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	677
Ppu21I	YACGTR	1 cut(s)	914
PsiI	TTATAA	1 cut(s)	740
PspLI	CGTACG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	6, 981
PspPI	GGNCC	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	2 cut(s)	115, 696
RsaNI	GTAC	2 cut(s)	114, 695
RseI	CAYNNNNRTG	2 cut(s)	626, 896
SaqAI	TTAA	3 cut(s)	495, 798, 1080
SatI	GCNGC	4 cut(s)	420, 430, 927, 930
Sau3AI	GATC	6 cut(s)	4, 169, 180, 202, 844, 918
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	1 cut(s)	677
SfaNI	GCATC	2 cut(s)	64, 664
SfuI	TTCGAA	1 cut(s)	850
SmiMI	CAYNNNNRTG	2 cut(s)	626, 896
SmlI	CTYRAG	3 cut(s)	546, 797, 818
SmoI	CTYRAG	3 cut(s)	546, 797, 818
Sse9I	AATT	4 cut(s)	136, 408, 759, 767
SsiI	CCGC	3 cut(s)	500, 948, 1060
SspMI	CTAG	5 cut(s)	69, 93, 402, 678, 1001
TaaI	ACNGT	4 cut(s)	539, 706, 728, 836
TaiI	ACGT	1 cut(s)	916
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	4 cut(s)	136, 408, 759, 767
TfiI	GAWTC	5 cut(s)	10, 72, 218, 468, 673
Tru1I	TTAA	3 cut(s)	495, 798, 1080
Tru9I	TTAA	3 cut(s)	495, 798, 1080
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	4 cut(s)	419, 429, 926, 929
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	5 cut(s)	111, 326, 845, 885, 902
TspRI	CASTG	1 cut(s)	946
Vha464I	CTTAAG	1 cut(s)	797
XbaI	TCTAGA	1 cut(s)	1000
XmiI	GTMKAC	1 cut(s)	328
XspI	CTAG	5 cut(s)	69, 93, 402, 678, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.