Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Forward (+)

89414183 .. 89416750

Gene Structure 2568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG671700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATCATCATCATCATCATGATCAGAATAGCGAAACGGCGTCGTCGGAGCCGGCGGCCATAGAGCACAGGGCCTACGCCAGGGTGGGTCTGCTCGGCAACCCCAGCGATGTCTACTACGGCCGTACGATCTCTTTCAGCCTCGGCAACTTCTGGGCCTCCGTCCGATTACACCCCTCCGATGACCTCGTCATCCAGCCCCACCCCACCCACGACCTCGTCGTCTTCAGATCTCTCCCCCACCTGGTGAATCGGCTAGACAATGAGGGTTATTATGGCGGTGTTCGATTACTGATGGCGATTTGCAAAGTGTTTTTTGATTATTGCAAGGAAAAAGAGATCCATCTGGACTCGAGAAACTTCACTCTCTCATATGATACTAATATCCCTCGCCAGATGGGACTATCGGGGTCTAGTGCCATTGTGTGTGCGGCCCTTAGCTGCCTTCTTGACTTCTACAAGGTTAGGCATTTGATCAAAGTGGAGGTCAGGCCTGGCATTGTCCTCGGCGCGGAGAAACAGCTCGGCATTGTTGCTGGTCTTCAAGATCGGGTTGCACAGGTTTATGGAGGCCTTGTTTACATGGAATTTGATAGGGAACACATGGATACTTTGGGGCATGGCATTTACACACCCATGGATGTTTGTCTTCTGCCGCCTCTATATCTCATATATGCCGAGAATCCAAGTGATTCTGGGAAGGTACACAGTACAGTTCGCCAAAGGTGGCTCAATGGCGATGAGTTTATAATATCATCAATGAAGGAAGTAGCAGATATTGCACAAGAAGGAAGGAAAGCCTTACTTGAAAAGGACTACACTAAACTAGCAGCTCTCATGAACTCTAATTTTGATCTTAGAAGGTTTGTGATCTCTGCATCTTTGCATCTGACTAATGCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

301

Amino Acids

33.88

Weight (kDa)

6.23

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	113 - 191	2.7e-09	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AasI	GACNNNNNNGTC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	512
AciI	CCGC	5 cut(s)	56, 279, 431, 512, 656
AclWI	GGATC	2 cut(s)	12, 334
AcoI	YGGCCR	2 cut(s)	57, 121
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	3 cut(s)	127, 705, 712
AfiI	CCNNNNNNNGG	3 cut(s)	81, 244, 511
AgsI	TTSAA	2 cut(s)	545, 809
AjnI	CCWGG	3 cut(s)	80, 243, 493
AluBI	AGCT	3 cut(s)	441, 523, 833
AluI	AGCT	3 cut(s)	441, 523, 833
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	12, 334
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	7 cut(s)	57, 72, 121, 156, 432, 491, 571
ApeKI	GCWGC	2 cut(s)	441, 830
ApoI	RAATTY	1 cut(s)	587
ArsI	GACNNNNNNTTYG	2 cut(s)	471, 503
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	3 cut(s)	72, 156, 433
AsuHPI	GGTGA	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	352
BbsI	GAAGAC	3 cut(s)	217, 533, 641
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	428, 842
BccI	CCATC	3 cut(s)	289, 351, 391
BceAI	ACGGC	3 cut(s)	54, 108, 136
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	3 cut(s)	82, 245, 495
BciVI	GTATCC	1 cut(s)	601
BclI	TGATCA	2 cut(s)	22, 474
BfaI	CTAG	3 cut(s)	257, 414, 827
BfuI	GTATCC	1 cut(s)	601
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	5 cut(s)	57, 432, 442, 656, 831
BlsI	GCNGC	5 cut(s)	58, 433, 443, 657, 832
Bme1390I	CCNGG	3 cut(s)	82, 245, 495
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	3 cut(s)	72, 156, 433
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	82, 245, 495
BmsI	GCATC	2 cut(s)	887, 895
BpiI	GAAGAC	3 cut(s)	217, 533, 641
Bpu10I	CCTNAGC	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	81, 142, 505, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 244, 511
Bse118I	RCCGGY	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	82, 245, 495
BseDI	CCNNGG	4 cut(s)	81, 142, 505, 636
BseGI	GGATG	2 cut(s)	192, 646
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	81, 244, 511
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	428, 842
BseYI	CCCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	512
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	7 cut(s)	59, 74, 123, 158, 434, 493, 573
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	53
BsiWI	CGTACG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	3 cut(s)	81, 244, 511
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	7 cut(s)	59, 74, 123, 158, 434, 493, 573
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	5 cut(s)	56, 279, 431, 512, 656
BspANI	GGCC	7 cut(s)	59, 74, 123, 158, 434, 493, 573
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	2 cut(s)	19, 837
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	12, 334
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	4 cut(s)	81, 142, 505, 636
BssMI	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	636
Bst2UI	CCWGG	3 cut(s)	82, 245, 495
Bst4CI	ACNGT	2 cut(s)	710, 715
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	437, 857
BstDSI	CCRYGG	1 cut(s)	636
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	192, 646
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	9 cut(s)	7, 25, 132, 233, 342, 477, 550, 856, 873
BstMBI	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 779
BstNI	CCWGG	3 cut(s)	82, 245, 495
BstSCI	CCNGG	3 cut(s)	80, 243, 493
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	428, 842
BstV2I	GAAGAC	3 cut(s)	217, 533, 641
BstX2I	RGATCY	2 cut(s)	230, 339
BstYI	RGATCY	2 cut(s)	230, 339
BstZI	CGGCCG	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	7 cut(s)	59, 74, 123, 158, 434, 493, 573
BtgI	CCRYGG	1 cut(s)	636
BtgZI	GCGATG	2 cut(s)	123, 753
BtsCI	GGATG	2 cut(s)	192, 646
Cac8I	GCNNGC	1 cut(s)	54
CciI	TCATGA	2 cut(s)	19, 837
CfoI	GCGC	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	72, 156, 433
CseI	GACGC	1 cut(s)	30
CsiI	ACCWGGT	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	126, 704, 711
CviAII	CATG	6 cut(s)	20, 583, 604, 620, 637, 838
CviQI	GTAC	3 cut(s)	126, 704, 711
DdeI	CTNAG	2 cut(s)	437, 857
DpnI	GATC	9 cut(s)	6, 24, 131, 232, 341, 476, 549, 855, 872
DpnII	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
DraIII	CACNNNGTG	1 cut(s)	247
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	57, 121
EagI	CGGCCG	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	636
Eco147I	AGGCCT	2 cut(s)	493, 573
Eco52I	CGGCCG	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	3 cut(s)	80, 243, 493
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	6 cut(s)	23, 586, 607, 623, 640, 841
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	6 cut(s)	19, 582, 603, 619, 636, 837
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	2 cut(s)	22, 474
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	57, 432, 442, 656, 831
FokI	GGATG	2 cut(s)	179, 653
Fsp4HI	GCNGC	5 cut(s)	57, 432, 442, 656, 831
FspBI	CTAG	3 cut(s)	257, 414, 827
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	5 cut(s)	57, 432, 442, 656, 831
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	7 cut(s)	59, 74, 123, 158, 434, 493, 573
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	6 cut(s)	23, 586, 607, 623, 640, 841
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HinfI	GANTC	4 cut(s)	250, 350, 682, 692
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	115, 580, 706
Hpy188I	TCNGA	6 cut(s)	27, 49, 167, 181, 230, 891
Hpy188III	TCNNGA	6 cut(s)	20, 347, 354, 449, 545, 838
Hpy8I	GTNNAC	3 cut(s)	115, 580, 706
Hpy99I	CGWCG	3 cut(s)	46, 49, 224
HpyAV	CCTTC	6 cut(s)	455, 694, 757, 782, 786, 855
HpyCH4III	ACNGT	2 cut(s)	710, 715
HpyCH4V	TGCA	6 cut(s)	306, 327, 557, 782, 878, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 779
HpyF3I	CTNAG	2 cut(s)	437, 857
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	6 cut(s)	23, 586, 607, 623, 640, 841
HspAI	GCGC	1 cut(s)	510
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	22, 474
Kzo9I	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	2 cut(s)	428, 842
LweI	GCATC	2 cut(s)	887, 895
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	3 cut(s)	257, 414, 827
MalI	GATC	9 cut(s)	6, 24, 131, 232, 341, 476, 549, 855, 872
MboI	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
MboII	GAAGA	3 cut(s)	217, 533, 641
MflI	RGATCY	2 cut(s)	230, 339
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	587, 847
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	27
MroNI	GCCGGC	1 cut(s)	52
MslI	CAYNNNNRTG	2 cut(s)	18, 635
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	3 cut(s)	82, 245, 495
MvaI	CCWGG	3 cut(s)	82, 245, 495
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	105, 779
NaeI	GCCGGC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	636
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	6 cut(s)	23, 586, 607, 623, 640, 841
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	5 cut(s)	75, 123, 486, 504, 703
PaeR7I	CTCGAG	1 cut(s)	352
PagI	TCATGA	2 cut(s)	19, 837
PceI	AGGCCT	2 cut(s)	493, 573
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	250, 682, 692
Pfl23II	CGTACG	1 cut(s)	125
PflFI	GACNNNGTC	2 cut(s)	188, 218
PkrI	GCNGC	5 cut(s)	58, 433, 443, 657, 832
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	80, 243, 493
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	3 cut(s)	80, 243, 493
PspLI	CGTACG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	72, 156, 433
PsuI	RGATCY	2 cut(s)	230, 339
PsyI	GACNNNGTC	2 cut(s)	188, 218
RsaI	GTAC	3 cut(s)	127, 705, 712
RsaNI	GTAC	3 cut(s)	126, 704, 711
RseI	CAYNNNNRTG	2 cut(s)	18, 635
SatI	GCNGC	5 cut(s)	57, 432, 442, 656, 831
Sau3AI	GATC	9 cut(s)	4, 22, 129, 230, 339, 474, 547, 853, 870
Sau96I	GGNCC	3 cut(s)	72, 156, 433
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	82, 245, 495
SduI	GDGCHC	1 cut(s)	69
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	887, 895
Sfr274I	CTCGAG	1 cut(s)	352
SlaI	CTCGAG	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	18, 635
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
Sse9I	AATT	2 cut(s)	587, 847
SseBI	AGGCCT	2 cut(s)	493, 573
SsiI	CCGC	5 cut(s)	56, 279, 431, 512, 656
SspMI	CTAG	3 cut(s)	257, 414, 827
StuI	AGGCCT	2 cut(s)	493, 573
StyD4I	CCNGG	3 cut(s)	80, 243, 493
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	2 cut(s)	710, 715
TaqI	TCGA	2 cut(s)	286, 353
TasI	AATT	2 cut(s)	587, 847
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	3 cut(s)	59, 434, 658
TfiI	GAWTC	3 cut(s)	250, 682, 692
TseI	GCWGC	2 cut(s)	441, 830
TspDTI	ATGAA	2 cut(s)	776, 854
TspGWI	ACGGA	1 cut(s)	151
Tth111I	GACNNNGTC	2 cut(s)	188, 218
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	3 cut(s)	257, 414, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.