RLG00000022176

Glucuronokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010934
Physical Location & Seq
Forward (+)
81545363 .. 81547624
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022176

Sequence Viewer

Length: 1107 bp
ATGGATCATCATCATCATCATGATCAGAATAGCGAAACGGCGTCGTCGGAGCCGGCGGCCATAGAGCACAGGGCCTACGCCAGGGTGGGTCTGCTCGGCAACCCCAGCGATGTCTACTACGGCCGTACGATCTCTTTCAGCCTCGGCAACTTCTGGGCCTCCGTCCGATTATACCCCTCCGATGACCTCGTCATCCAGCCCCACCCCACCCACGACCTCGTCGTCTTCAGATCTCTCCCCCACCTGGTCAATCGGCTAGACAATGAGGGTTATTATGGCGGTGTTCGATTACTGATGGCGATTTGCAAAGTGTTTTTTGATTATTGCAAGGAAAAAGAGATCCATCTGGACCCGAGAAACTTCACTCTCTCATATGATACTAATATCCCTCGCCAGATGGGGCTATCGGGGTCTAGTGCTATTGTGTGTGCAGCCCTTAGCTGCCTTCTTGACTTCTACAAGGTTAGGCATTTGATCAAAGTGGAGGTCAGGCCTGGCATTGTCCTCGGCGCGGAGAAACAGCTCGGCATTGTTGCTGGTCTTCAAGATCGGGTTGCACAGGTTTATGGAGGCCTTGTTTACATGGAATTTGATAAGGAACACATGGATACTTTGGGGCATGGCATTTACACACCCATGGATGTTTGTCTTCTGCCGCCTCTATATCTCATATATGCCGAGAATCCAAGCGATTCTGGGAAGGTACACAGTACAGTTCGCCAAAGGTGGCTCAATGGCGATGAGTTTATAATATCATCAATGAAAGAAGTAGCAGATATTGCACAAGAAGGAAGGAAAGCCTTACTCGAAAAGGACTACACTAAACTATCAGCTCTCATGAACTCTAATTTTGATCTTAGAAGACGCATGTTTGGAGATGACGCTCTTGGTGCTTTAAACATAGAAATGGTAGAGGTTGCCCGAAGGGTGGGTGCAGCCTCGAAATTCACAGGTAGTGGAGGAGCTGTGGTTGTATTTTGCCCCGATGGTCCTTCACAAGTGAAGCTATTAGAGGACGCATGTCTAAGTGCTGGTTTTAAATTAGAACCAATTAAAGTTATTCCCTCCCTTCTAAATGAGGTTGATCTTCAAACCCTGTCAAAATAA

Protein Analysis

369

Amino Acids

40.91

Weight (kDa)

5.96

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 113 - 191 3.9e-09 GHMP kinases N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01640 AT3G01640 AT5G14470
fragaria_vesca FvH4_6g51800 FvH4_6g51800
malus_domestica MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica Prupe.3G293800_v2.0.a1
pyrus_communis pycom111g01930 pycom17g01930
rosa_chinensis RchiOBHm_Chr2g0173281
rosa_laevigata RLG00000022176
rosa_multiflora Rmu_sc0010961.1_g000007
rosa_roxburghii Rroxscaffold_2G00079080
rosa_rugosa Rorug02G0567000
rosa_samantha Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana Rw2G053140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AasI GACNNNNNNGTC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 512
AciI CCGC 4 cut(s) 56, 279, 512, 656
AclWI GGATC 2 cut(s) 12, 334
AcoI YGGCCR 2 cut(s) 57, 121
AcsI RAATTY 2 cut(s) 587, 944
AcuI CTGAAG 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 3 cut(s) 127, 705, 712
AfiI CCNNNNNNNGG 4 cut(s) 81, 244, 511, 928
AgsI TTSAA 2 cut(s) 545, 1091
AjnI CCWGG 3 cut(s) 80, 243, 493
AluBI AGCT 5 cut(s) 441, 523, 833, 965, 1006
AluI AGCT 5 cut(s) 441, 523, 833, 965, 1006
Alw21I GWGCWC 1 cut(s) 69
AlwI GGATC 2 cut(s) 12, 334
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 6 cut(s) 57, 72, 121, 156, 491, 571
ApeKI GCWGC 3 cut(s) 431, 441, 935
ApoI RAATTY 2 cut(s) 587, 944
ArsI GACNNNNNNTTYG 2 cut(s) 471, 503
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 4 cut(s) 72, 156, 349, 989
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 2 cut(s) 349, 989
BbsI GAAGAC 4 cut(s) 217, 533, 641, 868
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 428, 443, 947
BccI CCATC 4 cut(s) 289, 351, 391, 980
BceAI ACGGC 3 cut(s) 54, 108, 136
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 3 cut(s) 82, 245, 495
BciVI GTATCC 1 cut(s) 601
BclI TGATCA 2 cut(s) 22, 474
BfaI CTAG 2 cut(s) 257, 414
BfuI GTATCC 1 cut(s) 601
BglII AGATCT 1 cut(s) 230
BisI GCNGC 5 cut(s) 57, 432, 442, 656, 936
BlsI GCNGC 5 cut(s) 58, 433, 443, 657, 937
Bme1390I CCNGG 3 cut(s) 82, 245, 495
Bme18I GGWCC 2 cut(s) 349, 989
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 4 cut(s) 72, 156, 349, 989
BmiI GGNNCC 2 cut(s) 51, 351
BmrFI CCNGG 3 cut(s) 82, 245, 495
BoxI GACNNNNGTC 1 cut(s) 1020
BpiI GAAGAC 4 cut(s) 217, 533, 641, 868
Bpu10I CCTNAGC 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 4 cut(s) 81, 142, 505, 636
BsaXI ACNNNNNCTCC 6 cut(s) 561, 591, 951, 954, 981, 984
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 244, 511, 928
Bse118I RCCGGY 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 82, 245, 495
BseDI CCNNGG 4 cut(s) 81, 142, 505, 636
BseGI GGATG 2 cut(s) 192, 646
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 4 cut(s) 81, 244, 511, 928
BseRI GAGGAG 1 cut(s) 975
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 428, 443, 947
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 2 cut(s) 450, 954
Bsh1236I CGCG 1 cut(s) 512
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 6 cut(s) 59, 74, 123, 158, 493, 573
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 53
BsiWI CGTACG 1 cut(s) 125
BslI CCNNNNNNNGG 4 cut(s) 81, 244, 511, 928
BsnI GGCC 6 cut(s) 59, 74, 123, 158, 493, 573
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 4 cut(s) 56, 279, 512, 656
BspANI GGCC 6 cut(s) 59, 74, 123, 158, 493, 573
BspFNI CGCG 1 cut(s) 512
BspHI TCATGA 2 cut(s) 19, 837
BspLI GGNNCC 2 cut(s) 51, 351
BspPI GGATC 2 cut(s) 12, 334
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 4 cut(s) 81, 142, 505, 636
BssMI GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 3 cut(s) 82, 245, 495
Bst4CI ACNGT 2 cut(s) 710, 715
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 779
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 437, 857, 1025
BstDSI CCRYGG 1 cut(s) 636
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 192, 646
BstFNI CGCG 1 cut(s) 512
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 9 cut(s) 7, 25, 132, 233, 342, 477, 550, 856, 1087
BstMBI GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 105, 779, 890
BstNI CCWGG 3 cut(s) 82, 245, 495
BstNSI RCATGY 2 cut(s) 871, 1023
BstPAI GACNNNNGTC 1 cut(s) 1020
BstSCI CCNGG 3 cut(s) 80, 243, 493
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 428, 443, 947
BstV2I GAAGAC 4 cut(s) 217, 533, 641, 868
BstX2I RGATCY 2 cut(s) 230, 339
BstYI RGATCY 2 cut(s) 230, 339
BstZI CGGCCG 1 cut(s) 121
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 6 cut(s) 59, 74, 123, 158, 493, 573
BtgI CCRYGG 1 cut(s) 636
BtgZI GCGATG 2 cut(s) 123, 753
BtsCI GGATG 2 cut(s) 192, 646
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 2 cut(s) 19, 837
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 4 cut(s) 72, 156, 349, 989
CseI GACGC 4 cut(s) 30, 873, 890, 1025
CsiI ACCWGGT 1 cut(s) 243
Csp6I GTAC 3 cut(s) 126, 704, 711
CviAII CATG 8 cut(s) 20, 583, 604, 620, 637, 838, 868, 1020
CviQI GTAC 3 cut(s) 126, 704, 711
DdeI CTNAG 3 cut(s) 437, 857, 1025
DpnI GATC 9 cut(s) 6, 24, 131, 232, 341, 476, 549, 855, 1086
DpnII GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
DraI TTTAAA 2 cut(s) 897, 1039
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 2 cut(s) 57, 121
EagI CGGCCG 1 cut(s) 121
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 636
Eco147I AGGCCT 2 cut(s) 493, 573
Eco47I GGWCC 2 cut(s) 349, 989
Eco52I CGGCCG 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 3 cut(s) 80, 243, 493
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 8 cut(s) 23, 586, 607, 623, 640, 841, 871, 1023
FatI CATG 8 cut(s) 19, 582, 603, 619, 636, 837, 867, 1019
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 22, 474
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 57, 432, 442, 656, 936
FokI GGATG 2 cut(s) 179, 653
Fsp4HI GCNGC 5 cut(s) 57, 432, 442, 656, 936
FspBI CTAG 2 cut(s) 257, 414
GlaI GCGC 1 cut(s) 511
GluI GCNGC 5 cut(s) 57, 432, 442, 656, 936
GsaI CCCAGC 1 cut(s) 108
HaeIII GGCC 6 cut(s) 59, 74, 123, 158, 493, 573
HapII CCGG 1 cut(s) 53
HgaI GACGC 4 cut(s) 30, 873, 890, 1025
HhaI GCGC 1 cut(s) 512
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 8 cut(s) 23, 586, 607, 623, 640, 841, 871, 1023
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 2 cut(s) 682, 692
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 3 cut(s) 115, 580, 706
Hpy188I TCNGA 5 cut(s) 27, 49, 167, 181, 230
Hpy188III TCNNGA 5 cut(s) 20, 347, 449, 545, 838
Hpy8I GTNNAC 3 cut(s) 115, 580, 706
Hpy99I CGWCG 3 cut(s) 46, 49, 224
HpyAV CCTTC 7 cut(s) 455, 694, 782, 786, 918, 1002, 1079
HpyCH4III ACNGT 2 cut(s) 710, 715
HpyCH4V TGCA 6 cut(s) 306, 327, 431, 557, 782, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 779, 890
HpyF3I CTNAG 3 cut(s) 437, 857, 1025
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 8 cut(s) 23, 586, 607, 623, 640, 841, 871, 1023
HspAI GCGC 1 cut(s) 510
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 22, 474
Kzo9I GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
LmnI GCTCC 2 cut(s) 49, 962
Lsp1109I GCAGC 3 cut(s) 428, 443, 947
MabI ACCWGGT 1 cut(s) 243
MaeI CTAG 2 cut(s) 257, 414
MalI GATC 9 cut(s) 6, 24, 131, 232, 341, 476, 549, 855, 1086
MboI GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
MboII GAAGA 5 cut(s) 217, 533, 641, 873, 1079
MflI RGATCY 2 cut(s) 230, 339
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 5 cut(s) 587, 847, 944, 1040, 1050
MmeI TCCRAC 1 cut(s) 27
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 3 cut(s) 896, 1038, 1053
MslI CAYNNNNRTG 3 cut(s) 18, 635, 905
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 3 cut(s) 82, 245, 495
MvaI CCWGG 3 cut(s) 82, 245, 495
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 3 cut(s) 105, 779, 890
NaeI GCCGGC 1 cut(s) 54
NcoI CCATGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 373
NdeII GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 8 cut(s) 23, 586, 607, 623, 640, 841, 871, 1023
NlaIV GGNNCC 2 cut(s) 51, 351
NmeAIII GCCGAG 5 cut(s) 75, 123, 486, 504, 703
NspI RCATGY 2 cut(s) 871, 1023
PagI TCATGA 2 cut(s) 19, 837
PceI AGGCCT 2 cut(s) 493, 573
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 682, 692
Pfl23II CGTACG 1 cut(s) 125
PflFI GACNNNGTC 2 cut(s) 188, 218
PkrI GCNGC 5 cut(s) 58, 433, 443, 657, 937
PshAI GACNNNNGTC 1 cut(s) 1020
PsiI TTATAA 1 cut(s) 749
Psp6I CCWGG 3 cut(s) 80, 243, 493
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 3 cut(s) 80, 243, 493
PspLI CGTACG 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 51, 351
PspPI GGNCC 4 cut(s) 72, 156, 349, 989
PsuI RGATCY 2 cut(s) 230, 339
PsyI GACNNNGTC 2 cut(s) 188, 218
RsaI GTAC 3 cut(s) 127, 705, 712
RsaNI GTAC 3 cut(s) 126, 704, 711
RseI CAYNNNNRTG 3 cut(s) 18, 635, 905
SaqAI TTAA 3 cut(s) 896, 1038, 1053
SatI GCNGC 5 cut(s) 57, 432, 442, 656, 936
Sau3AI GATC 9 cut(s) 4, 22, 129, 230, 339, 474, 547, 853, 1084
Sau96I GGNCC 4 cut(s) 72, 156, 349, 989
ScrFI CCNGG 3 cut(s) 82, 245, 495
SduI GDGCHC 1 cut(s) 69
SexAI ACCWGGT 1 cut(s) 243
SinI GGWCC 2 cut(s) 349, 989
SmiMI CAYNNNNRTG 3 cut(s) 18, 635, 905
Sse9I AATT 5 cut(s) 587, 847, 944, 1040, 1050
SseBI AGGCCT 2 cut(s) 493, 573
SsiI CCGC 4 cut(s) 56, 279, 512, 656
SspMI CTAG 2 cut(s) 257, 414
StuI AGGCCT 2 cut(s) 493, 573
StyD4I CCNGG 3 cut(s) 80, 243, 493
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 710, 715
TaqI TCGA 3 cut(s) 286, 807, 941
TasI AATT 5 cut(s) 587, 847, 944, 1040, 1050
TatI WGTACW 1 cut(s) 710
TauI GCSGC 2 cut(s) 59, 658
TfiI GAWTC 2 cut(s) 682, 692
Tru1I TTAA 3 cut(s) 896, 1038, 1053
Tru9I TTAA 3 cut(s) 896, 1038, 1053
TseI GCWGC 3 cut(s) 431, 441, 935
TspDTI ATGAA 2 cut(s) 776, 854
TspGWI ACGGA 1 cut(s) 151
Tth111I GACNNNGTC 2 cut(s) 188, 218
VpaK11BI GGWCC 2 cut(s) 349, 989
XagI CCTNNNNNAGG 1 cut(s) 79
XapI RAATTY 2 cut(s) 587, 944
XceI RCATGY 2 cut(s) 871, 1023
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 257, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.