Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

69161071 .. 69161418

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0567000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGAGTCATAATCACGTGGTGTTTCAATCGGTTCCTTTCATCTCTTTTTTAAACTTGGAGTTAAGAAATGGCCACCCACAAAATACCATCTCACGTACAAAATCAAAGGTGGAGCTAAAGCCAATCTTGGGACATTGGCATTGTCGCGTGCACTCGACCTTGGAATTCGGGCTATGGGCTAAGGTTTCCAAGTTTAGGTTTCAGCAGGTTGAACCAATCTCGCCGGCTGATCTTTTGATCAGCTTTGAGCGTCGGAACCATGGCGATGAGTTTCCGGTTCGAAGGGGCAAGTGGGGCTTTAGCGCGCGCATGCGAATCCGCCCATGGATGGAAGGATGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

115

Amino Acids

13.55

Weight (kDa)

10.27

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccII	CGCG	3 cut(s)	150, 308, 310
AciI	CCGC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	19
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	131, 198, 331
AgsI	TTSAA	2 cut(s)	29, 215
AluBI	AGCT	2 cut(s)	118, 246
AluI	AGCT	2 cut(s)	118, 246
Alw21I	GWGCWC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	3 cut(s)	308, 310, 312
AsuII	TTCGAA	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	75
BbrPI	CACGTG	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	2 cut(s)	98, 325
BclI	TGATCA	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	36, 260
BmsI	GCATC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	283
BsaAI	YACGTR	2 cut(s)	19, 98
BsaJI	CCNNGG	3 cut(s)	162, 262, 326
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 198, 331
Bse118I	RCCGGY	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	162, 262, 326
BseGI	GGATG	2 cut(s)	336, 344
BseLI	CCNNNNNNNGG	3 cut(s)	131, 198, 331
BsePI	GCGCGC	2 cut(s)	306, 308
BseSI	GKGCMC	1 cut(s)	156
Bsh1236I	CGCG	3 cut(s)	150, 308, 310
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	227, 278
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	3 cut(s)	131, 198, 331
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	232, 240
Bsp19I	CCATGG	2 cut(s)	262, 326
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	1 cut(s)	75
BspFNI	CGCG	3 cut(s)	150, 308, 310
BspLI	GGNNCC	2 cut(s)	36, 260
BspMI	ACCTGC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	162, 262, 326
BssHII	GCGCGC	2 cut(s)	306, 308
BssMI	GATC	2 cut(s)	232, 240
BssT1I	CCWWGG	3 cut(s)	162, 262, 326
BstBAI	YACGTR	2 cut(s)	19, 98
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	5 cut(s)	152, 228, 308, 310, 314
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	2 cut(s)	262, 326
BstF5I	GGATG	2 cut(s)	336, 344
BstFNI	CGCG	3 cut(s)	150, 308, 310
BstHHI	GCGC	3 cut(s)	308, 310, 312
BstKTI	GATC	2 cut(s)	235, 243
BstMBI	GATC	2 cut(s)	232, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	3 cut(s)	150, 308, 310
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	2 cut(s)	262, 326
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	336, 344
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	5 cut(s)	152, 228, 308, 310, 314
CfoI	GCGC	3 cut(s)	308, 310, 312
Cfr10I	RCCGGY	1 cut(s)	226
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	3 cut(s)	263, 313, 327
CviJI	RGCY	8 cut(s)	75, 118, 124, 175, 182, 230, 246, 300
CviKI_1	RGCY	8 cut(s)	75, 118, 124, 175, 182, 230, 246, 300
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	234, 242
DpnII	GATC	2 cut(s)	232, 240
DraI	TTTAAA	1 cut(s)	54
DraIII	CACNNNGTG	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	311
Eco130I	CCWWGG	3 cut(s)	162, 262, 326
Eco72I	CACGTG	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	3 cut(s)	162, 262, 326
EcoT22I	ATGCAT	1 cut(s)	344
ErhI	CCWWGG	3 cut(s)	162, 262, 326
FaeI	CATG	3 cut(s)	266, 316, 330
FaiI	YATR	5 cut(s)	12, 178, 264, 314, 328
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 284, 316
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	3 cut(s)	262, 312, 326
FbaI	TGATCA	1 cut(s)	240
FokI	GGATG	1 cut(s)	343
GlaI	GCGC	3 cut(s)	307, 309, 311
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	227, 278
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	3 cut(s)	308, 310, 312
Hin1II	CATG	3 cut(s)	266, 316, 330
Hin6I	GCGC	3 cut(s)	306, 308, 310
HinP1I	GCGC	3 cut(s)	306, 308, 310
HinfI	GANTC	2 cut(s)	7, 318
HpaII	CCGG	2 cut(s)	227, 278
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	258, 347
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	279, 329
HpyCH4IV	ACGT	2 cut(s)	18, 97
HpyCH4V	TGCA	2 cut(s)	154, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	18, 97
Hsp92II	CATG	3 cut(s)	266, 316, 330
HspAI	GCGC	3 cut(s)	306, 308, 310
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	232, 240
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	3 cut(s)	194, 240, 291
LweI	GCATC	1 cut(s)	329
MaeII	ACGT	2 cut(s)	18, 97
MalI	GATC	2 cut(s)	234, 242
MboI	GATC	2 cut(s)	232, 240
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	236
Mox20I	TGGCCA	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	344
MroNI	GCCGGC	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	53, 65
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	75
MspI	CCGG	2 cut(s)	227, 278
MvnI	CGCG	3 cut(s)	150, 308, 310
MwoI	GCNNNNNNNGC	1 cut(s)	297
NaeI	GCCGGC	1 cut(s)	228
NcoI	CCATGG	2 cut(s)	262, 326
NdeII	GATC	2 cut(s)	232, 240
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	266, 316, 330
NlaIV	GGNNCC	2 cut(s)	36, 260
NsiI	ATGCAT	1 cut(s)	344
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	316
PauI	GCGCGC	2 cut(s)	306, 308
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	15
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	2 cut(s)	19, 98
PspCI	CACGTG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	36, 260
PteI	GCGCGC	2 cut(s)	306, 308
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	53, 65
Sau3AI	GATC	2 cut(s)	232, 240
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	9 cut(s)	21, 100, 114, 120, 164, 189, 203, 213, 248
SfaNI	GCATC	1 cut(s)	329
SfuI	TTCGAA	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	267
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	322
StyI	CCWWGG	3 cut(s)	162, 262, 326
TaiI	ACGT	2 cut(s)	21, 100
TaqI	TCGA	2 cut(s)	158, 283
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	53, 65
Tru9I	TTAA	2 cut(s)	53, 65
TspDTI	ATGAA	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	316
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.