Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1645298 .. 1647750

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1022300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACGAGCACCACAAAACGACGTCGTCGGCGGAAGCGGCGGTGATTGAGCACAGGGCGTACGCGAGGGTGGGCCTGCTGGGGAACCCGAGCGACGTCTACTACGGCCGCACGATCTCCTTCACCGCCAGTAACTTCTGGGCCACCGTGCGGTTGCAACCGTCCGATGATCTCGTAATCCAGCCCCACCTCACCCACGACCTCGTCGTCTTCCGATCCCTCCATCACCTGGTGAATCGGTTAGATAGTGAGGGATATTATGGAGGTGTTCGATTGCTGATGGCGATTTGCAAAGTGTTCGTTGATTATTGCAAGGAAAATGCGATTGAATTGGAAGCTCGAAATTTCACTCTCTCGTATGATACGAATATCCCTCGCCAGACAGGACTTTCGGGGTCTAGTGCGATTGTGTGTGCAGCCCTGAGCTGCCTTCTTGACTTCCACAAGGTTAGGCATTTAATCAAAGTGGAGGTCCGCCCCGGCCTCATCCTCAATGCCGAGAAGCAACTTGGAATTGTTGCCGGTCTTCAAGATCGCGTGGCGCAGGTTTATGGCGGCCTTGTTTACATGGAATTTGCCAAGGAAGACATGGATACATTGGGGCATGGAATTTACACACCCATGGATGTTAGTCTTCTTCCGCCTCTTCACCTCATCTATGCCGAGAATCCAAGCGATTCTGGGAAGGTACATAGTACAGTTCGTCAAAGGTGGCTCAACGGTGATGAGTTTATAATATCATCGATGACAGAAGTTGCAGATATTGCACTAGAAGGAAGGACGGCTTTACTTGAAAAGGACTACGCTAAATTAGCTTCTCTCATGAACAGAAATTTTGACGTTAGAAGAAGCATGTTCGGAGACGATGCTCTAGGTGCTTTAAACATAGAAATGGTGGAGGTGGCCCGGAGGGTGGGTGCAGCATCCAAATTCACAGGTAGCGGAGGGGCAGTCATCGTATTTTGCCCCGATGGTCCTTCACAAGTGAAGCTCTTAGAGGACGAGTGTCGAAAGGCTGGCTTTAAACTTGACCAGATAGACGTCATTCCCTCTCTTCTAAACGAGGTTGACCTACAAACCTTGTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

364

Amino Acids

40.11

Weight (kDa)

5.65

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	109 - 186	5.9e-09	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	3 cut(s)	26, 99, 1044
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	65, 537
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
AcyI	GRCGYC	3 cut(s)	23, 96, 1041
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	3 cut(s)	62, 690, 697
AfiI	CCNNNNNNNGG	3 cut(s)	150, 229, 913
AgsI	TTSAA	3 cut(s)	329, 530, 794
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	4 cut(s)	338, 426, 815, 991
AluI	AGCT	4 cut(s)	338, 426, 815, 991
Alw21I	GWGCWC	2 cut(s)	12, 54
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	6 cut(s)	73, 106, 141, 481, 556, 903
ApeKI	GCWGC	3 cut(s)	416, 426, 920
ApoI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
ArsI	GACNNNNNNTTYG	4 cut(s)	373, 405, 456, 488
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
AsuC2I	CCSGG	2 cut(s)	480, 907
AsuHPI	GGTGA	7 cut(s)	55, 115, 184, 218, 244, 641, 734
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	472, 974
BbsI	GAAGAC	4 cut(s)	202, 518, 591, 626
Bbv12I	GWGCWC	2 cut(s)	12, 54
BbvI	GCAGC	3 cut(s)	413, 428, 932
BccI	CCATC	3 cut(s)	231, 274, 965
BceAI	ACGGC	2 cut(s)	121, 798
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	2 cut(s)	480, 907
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	3 cut(s)	399, 770, 872
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	39, 109, 417, 427, 556, 921
BlsI	GCNGC	6 cut(s)	40, 110, 418, 428, 557, 922
Bme1390I	CCNGG	3 cut(s)	230, 480, 907
Bme18I	GGWCC	2 cut(s)	472, 974
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	3 cut(s)	230, 480, 907
BmsI	GCATC	2 cut(s)	856, 932
BoxI	GACNNNNGTC	1 cut(s)	1005
BpiI	GAAGAC	4 cut(s)	202, 518, 591, 626
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	480, 907
Bsa29I	ATCGAT	1 cut(s)	743
BsaHI	GRCGYC	3 cut(s)	23, 96, 1041
BsaJI	CCNNGG	3 cut(s)	478, 579, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	901, 931, 936, 966
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 229, 913
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	230
BseCI	ATCGAT	1 cut(s)	743
BseDI	CCNNGG	3 cut(s)	478, 579, 621
BseGI	GGATG	3 cut(s)	486, 631, 923
BseLI	CCNNNNNNNGG	3 cut(s)	150, 229, 913
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	413, 428, 932
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	435, 939
Bsh1236I	CGCG	2 cut(s)	65, 537
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BshVI	ATCGAT	1 cut(s)	743
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	12, 54
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	480, 522, 907
BsiWI	CGTACG	1 cut(s)	60
BslI	CCNNNNNNNGG	3 cut(s)	150, 229, 913
BsmAI	GTCTC	1 cut(s)	855
BsmBI	CGTCTC	1 cut(s)	855
BsnI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	12, 54
Bsp143I	GATC	4 cut(s)	114, 169, 215, 532
Bsp19I	CCATGG	1 cut(s)	621
BspANI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BspCNI	CTCAG	1 cut(s)	414
BspDI	ATCGAT	1 cut(s)	743
BspFNI	CGCG	2 cut(s)	65, 537
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	86
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	3 cut(s)	478, 579, 621
BssMI	GATC	4 cut(s)	114, 169, 215, 532
BssNI	GRCGYC	3 cut(s)	23, 96, 1041
BssT1I	CCWWGG	2 cut(s)	579, 621
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	4 cut(s)	148, 162, 700, 722
Bst6I	CTCTTC	2 cut(s)	651, 1059
BstACI	GRCGYC	3 cut(s)	23, 96, 1041
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	77, 1018
BstDEI	CTNAG	2 cut(s)	422, 994
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	486, 631, 923
BstFNI	CGCG	2 cut(s)	65, 537
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	4 cut(s)	117, 172, 218, 535
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	4 cut(s)	114, 169, 215, 532
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 764, 812, 875
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	856
BstPAI	GACNNNNGTC	1 cut(s)	1005
BstSCI	CCNGG	3 cut(s)	228, 478, 905
BstUI	CGCG	2 cut(s)	65, 537
BstV1I	GCAGC	3 cut(s)	413, 428, 932
BstV2I	GAAGAC	4 cut(s)	202, 518, 591, 626
BstZI	CGGCCG	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	743
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BsuTUI	ATCGAT	1 cut(s)	743
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	3 cut(s)	486, 631, 923
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	77, 1018
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
ClaI	ATCGAT	1 cut(s)	743
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	61, 689, 696
CviAII	CATG	6 cut(s)	568, 589, 605, 622, 823, 853
CviQI	GTAC	3 cut(s)	61, 689, 696
DdeI	CTNAG	2 cut(s)	422, 994
DpnI	GATC	4 cut(s)	116, 171, 217, 534
DpnII	GATC	4 cut(s)	114, 169, 215, 532
DraI	TTTAAA	2 cut(s)	882, 1024
DraIII	CACNNNGTG	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	651, 1059
EarI	CTCTTC	2 cut(s)	651, 1059
EciI	GGCGGA	3 cut(s)	47, 464, 630
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	579, 621
Eco47I	GGWCC	2 cut(s)	472, 974
Eco52I	CGGCCG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	579, 621
ErhI	CCWWGG	2 cut(s)	579, 621
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
FalI	AAGNNNNNCTT	4 cut(s)	769, 801, 1004, 1036
FatI	CATG	6 cut(s)	567, 588, 604, 621, 822, 852
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	6 cut(s)	39, 109, 417, 427, 556, 921
FokI	GGATG	3 cut(s)	473, 638, 910
Fsp4HI	GCNGC	6 cut(s)	39, 109, 417, 427, 556, 921
FspBI	CTAG	3 cut(s)	399, 770, 872
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	6 cut(s)	39, 109, 417, 427, 556, 921
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
HapII	CCGG	3 cut(s)	480, 522, 907
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	3 cut(s)	23, 96, 1041
Hin1II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HinfI	GANTC	3 cut(s)	235, 667, 677
HpaII	CCGG	3 cut(s)	480, 522, 907
HphI	GGTGA	7 cut(s)	55, 115, 184, 218, 244, 641, 734
Hpy166II	GTNNAC	3 cut(s)	100, 565, 1069
Hpy188I	TCNGA	3 cut(s)	166, 215, 860
Hpy188III	TCNNGA	3 cut(s)	434, 530, 823
Hpy8I	GTNNAC	3 cut(s)	100, 565, 1069
Hpy99I	CGWCG	5 cut(s)	25, 28, 31, 98, 209
HpyAV	CCTTC	6 cut(s)	130, 440, 679, 767, 771, 987
HpyCH4III	ACNGT	4 cut(s)	148, 162, 700, 722
HpyCH4IV	ACGT	4 cut(s)	23, 96, 840, 1041
HpyCH4V	TGCA	7 cut(s)	157, 291, 312, 416, 758, 767, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 764, 812, 875
HpyF3I	CTNAG	2 cut(s)	422, 994
HpySE526I	ACGT	4 cut(s)	23, 96, 840, 1041
Hsp92I	GRCGYC	3 cut(s)	23, 96, 1041
Hsp92II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	4 cut(s)	114, 169, 215, 532
Lsp1109I	GCAGC	3 cut(s)	413, 428, 932
LweI	GCATC	2 cut(s)	856, 932
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	3 cut(s)	399, 770, 872
MaeII	ACGT	4 cut(s)	23, 96, 840, 1041
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	4 cut(s)	116, 171, 217, 534
MboI	GATC	4 cut(s)	114, 169, 215, 532
MboII	GAAGA	8 cut(s)	202, 518, 596, 626, 629, 638, 858, 1046
MhlI	GDGCHC	2 cut(s)	12, 54
MluCI	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
MseI	TTAA	3 cut(s)	458, 881, 1023
MslI	CAYNNNNRTG	2 cut(s)	620, 890
MspI	CCGG	3 cut(s)	480, 522, 907
MspR9I	CCNGG	3 cut(s)	230, 480, 907
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	2 cut(s)	65, 537
MwoI	GCNNNNNNNGC	4 cut(s)	38, 764, 812, 875
NciI	CCSGG	2 cut(s)	480, 907
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	4 cut(s)	114, 169, 215, 532
NlaIII	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
NlaIV	GGNNCC	1 cut(s)	86
NmeAIII	GCCGAG	2 cut(s)	523, 688
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 362
PfeI	GAWTC	3 cut(s)	235, 667, 677
Pfl23II	CGTACG	1 cut(s)	60
PflFI	GACNNNGTC	2 cut(s)	25, 203
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	40, 110, 418, 428, 557, 922
PshAI	GACNNNNGTC	1 cut(s)	1005
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	228
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	5 cut(s)	73, 141, 472, 904, 974
PsyI	GACNNNGTC	2 cut(s)	25, 203
RsaI	GTAC	3 cut(s)	62, 690, 697
RsaNI	GTAC	3 cut(s)	61, 689, 696
RseI	CAYNNNNRTG	2 cut(s)	620, 890
SaqAI	TTAA	3 cut(s)	458, 881, 1023
SatI	GCNGC	6 cut(s)	39, 109, 417, 427, 556, 921
Sau3AI	GATC	4 cut(s)	114, 169, 215, 532
Sau96I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
ScrFI	CCNGG	3 cut(s)	230, 480, 907
SduI	GDGCHC	2 cut(s)	12, 54
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	856, 932
SinI	GGWCC	2 cut(s)	472, 974
SmiMI	CAYNNNNRTG	2 cut(s)	620, 890
Sse9I	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
SspMI	CTAG	3 cut(s)	399, 770, 872
StyD4I	CCNGG	3 cut(s)	228, 478, 905
StyI	CCWWGG	2 cut(s)	579, 621
TaaI	ACNGT	4 cut(s)	148, 162, 700, 722
TaiI	ACGT	4 cut(s)	26, 99, 843, 1044
TaqI	TCGA	4 cut(s)	271, 340, 743, 1009
TasI	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	3 cut(s)	41, 111, 558
TfiI	GAWTC	3 cut(s)	235, 667, 677
Tru1I	TTAA	3 cut(s)	458, 881, 1023
Tru9I	TTAA	3 cut(s)	458, 881, 1023
TseI	GCWGC	3 cut(s)	416, 426, 920
TspDTI	ATGAA	1 cut(s)	839
Tth111I	GACNNNGTC	2 cut(s)	25, 203
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	472, 974
XapI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	3 cut(s)	399, 770, 872
ZraI	GACGTC	3 cut(s)	24, 97, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.