Rroxscaffold_2G00079080

Glucuronokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010934
Physical Location & Seq
Reverse (-)
2181466 .. 2183874
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079080.1

Sequence Viewer

Length: 1101 bp
ATGGATCATCATCATGATCAGAATAGTGAAACGGCGTCGTCGGAGCCAGCGGCCATAGAGCACAGGGCGTACGCCAGGGTGGGTCTGCTCGGCAACCCCAGCGATGTCTACTACGGCCGTACTATCTCTTTCAGCCTCGGCAACTTCTGGGCCTCCGTCCGATTACACCCTTCCGATGACCTCGTCATCCAGCCCCACCCCACTCACGACCTCGTCGTCTTCAGATCTCTCCCCCACCTGGTGAATCGGCTAGACAATGAGGGTTATTATGGCGGTGTTCGATTACTAATGGCGATTTGCAAAGTGTTTTTTGATTATTGCAAGGAAAAAGAGATCCATCTGGACTCGAGAAACTTCACTCTCTCATATGATACTAATATCCCTCGCCAGACGGGACTATCGGGGTCTAGTGCTATTGTGTGTGCAGCCCTTAGCTGCCTTCTTGACTTCTACAAGGTTAGGCATTTGATCAAAGTGGAGGTCAGGCCTGGCATTGTCCTCGGCGCAGAGAAACAGCTCGGCATTGTTGCTGGTCTTCAAGATCGGGTTGCACAGGTTTATGGAGGCCTTGTTTACATGGAATTTGATAAGGAACACATGGATACTTTGGGGCATGGCATTTACACACCCTTGGATGTTTGTCTTCTGCCGCCTCTATATCTCATATATGCCGAGAATCCAAGCGATTCTGGGAAGGTACACAGTACAGTTCGCCAAAGGTGGCTCAATGGCGATGAGTTTATAACATCATCAATGAAAGAAGTAGCAGATATTGCACAAGAAGGAAGGAAAGCCTTACTCAAAAAGGACTACACTAAACTAGCAGCTCTCATGAACTCTAATTTTGATCTTAGAAGACGCATGTTTGGAGATGACGCTCTTGGTGCTTTAAACATAGAAATGGTGGAGGTCGCCCGAAGGGTGGGTGCAGCCTCGAAATTCACAGGTAGTGGAGGAGCTGTGGTTGTATTTTGCCCTGATGGTCCTTCACAAGTGAAGCTATTAGAGGATGCATGTCTAAGTGCTGGTTTTAAATTTGAACCAATTAAAGTTATTCCCACCCTTCTAAATGAGGTTGATCTTCAAACCCTGTCAAAATAA

Protein Analysis

366

Amino Acids

40.58

Weight (kDa)

6.11

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 111 - 189 3.2e-09 GHMP kinases N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01640 AT3G01640 AT5G14470
fragaria_vesca FvH4_6g51800 FvH4_6g51800
malus_domestica MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica Prupe.3G293800_v2.0.a1
pyrus_communis pycom111g01930 pycom17g01930
rosa_chinensis RchiOBHm_Chr2g0173281
rosa_laevigata RLG00000022176
rosa_multiflora Rmu_sc0010961.1_g000007
rosa_roxburghii Rroxscaffold_2G00079080
rosa_rugosa Rorug02G0567000
rosa_samantha Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana Rw2G053140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 743
AasI GACNNNNNNGTC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 108
AciI CCGC 3 cut(s) 50, 273, 650
AclWI GGATC 2 cut(s) 12, 328
AcoI YGGCCR 2 cut(s) 51, 115
AcsI RAATTY 3 cut(s) 581, 938, 1034
AcuI CTGAAG 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 241
AfaI GTAC 4 cut(s) 71, 121, 699, 706
AfiI CCNNNNNNNGG 2 cut(s) 238, 922
AgsI TTSAA 3 cut(s) 539, 1040, 1085
AjnI CCWGG 3 cut(s) 74, 237, 487
AluBI AGCT 5 cut(s) 435, 517, 827, 959, 1000
AluI AGCT 5 cut(s) 435, 517, 827, 959, 1000
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 2 cut(s) 12, 328
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 5 cut(s) 51, 115, 150, 485, 565
ApeKI GCWGC 4 cut(s) 425, 435, 824, 929
ApoI RAATTY 3 cut(s) 581, 938, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
AspLEI GCGC 1 cut(s) 506
AspS9I GGNCC 2 cut(s) 150, 983
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 1 cut(s) 983
BbsI GAAGAC 4 cut(s) 211, 527, 635, 862
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 4 cut(s) 422, 437, 836, 941
BccI CCATC 2 cut(s) 345, 974
BceAI ACGGC 3 cut(s) 48, 102, 130
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 3 cut(s) 76, 239, 489
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 2 cut(s) 16, 468
BfaI CTAG 3 cut(s) 251, 408, 821
BfuI GTATCC 1 cut(s) 595
BglII AGATCT 1 cut(s) 224
BisI GCNGC 6 cut(s) 51, 426, 436, 650, 825, 930
BlsI GCNGC 6 cut(s) 52, 427, 437, 651, 826, 931
Bme1390I CCNGG 3 cut(s) 76, 239, 489
Bme18I GGWCC 1 cut(s) 983
BmeT110I CYCGRG 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 150, 983
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 3 cut(s) 76, 239, 489
BmsI GCATC 1 cut(s) 1000
BpiI GAAGAC 4 cut(s) 211, 527, 635, 862
Bpu10I CCTNAGC 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 4 cut(s) 75, 136, 499, 630
BsaXI ACNNNNNCTCC 6 cut(s) 555, 585, 945, 948, 975, 978
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 922
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 76, 239, 489
BseDI CCNNGG 4 cut(s) 75, 136, 499, 630
BseGI GGATG 3 cut(s) 186, 640, 1015
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 238, 922
BseRI GAGGAG 1 cut(s) 969
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 4 cut(s) 422, 437, 836, 941
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 2 cut(s) 444, 948
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 5 cut(s) 53, 117, 152, 487, 567
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 346
BsiWI CGTACG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 238, 922
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 5 cut(s) 53, 117, 152, 487, 567
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
BspACI CCGC 3 cut(s) 50, 273, 650
BspANI GGCC 5 cut(s) 53, 117, 152, 487, 567
BspHI TCATGA 2 cut(s) 13, 831
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 2 cut(s) 12, 328
BssECI CCNNGG 4 cut(s) 75, 136, 499, 630
BssMI GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 3 cut(s) 76, 239, 489
Bst4CI ACNGT 2 cut(s) 704, 709
BstACI GRCGYC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 773
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 431, 851, 1019
BstF5I GGATG 3 cut(s) 186, 640, 1015
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 8 cut(s) 7, 19, 227, 336, 471, 544, 850, 1081
BstMBI GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 99, 773, 884
BstNI CCWGG 3 cut(s) 76, 239, 489
BstNSI RCATGY 2 cut(s) 865, 1017
BstSCI CCNGG 3 cut(s) 74, 237, 487
BstV1I GCAGC 4 cut(s) 422, 437, 836, 941
BstV2I GAAGAC 4 cut(s) 211, 527, 635, 862
BstX2I RGATCY 2 cut(s) 224, 333
BstYI RGATCY 2 cut(s) 224, 333
BstZI CGGCCG 1 cut(s) 115
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 5 cut(s) 53, 117, 152, 487, 567
BtgZI GCGATG 2 cut(s) 117, 747
BtsCI GGATG 3 cut(s) 186, 640, 1015
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 2 cut(s) 13, 831
CfoI GCGC 1 cut(s) 506
Cfr13I GGNCC 2 cut(s) 150, 983
CseI GACGC 3 cut(s) 24, 867, 884
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 4 cut(s) 70, 120, 698, 705
CviAII CATG 7 cut(s) 14, 577, 598, 614, 832, 862, 1014
CviQI GTAC 4 cut(s) 70, 120, 698, 705
DdeI CTNAG 3 cut(s) 431, 851, 1019
DpnI GATC 8 cut(s) 6, 18, 226, 335, 470, 543, 849, 1080
DpnII GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
DraI TTTAAA 2 cut(s) 891, 1033
DraIII CACNNNGTG 1 cut(s) 241
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 2 cut(s) 51, 115
EagI CGGCCG 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 630
Eco147I AGGCCT 2 cut(s) 487, 567
Eco47I GGWCC 1 cut(s) 983
Eco52I CGGCCG 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 346
EcoRII CCWGG 3 cut(s) 74, 237, 487
EcoT14I CCWWGG 1 cut(s) 630
EcoT22I ATGCAT 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 7 cut(s) 17, 580, 601, 617, 835, 865, 1017
FaqI GGGAC 1 cut(s) 408
FatI CATG 7 cut(s) 13, 576, 597, 613, 831, 861, 1013
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 2 cut(s) 16, 468
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 6 cut(s) 51, 426, 436, 650, 825, 930
FokI GGATG 3 cut(s) 173, 647, 1022
Fsp4HI GCNGC 6 cut(s) 51, 426, 436, 650, 825, 930
FspBI CTAG 3 cut(s) 251, 408, 821
GlaI GCGC 1 cut(s) 505
GluI GCNGC 6 cut(s) 51, 426, 436, 650, 825, 930
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 5 cut(s) 53, 117, 152, 487, 567
HgaI GACGC 3 cut(s) 24, 867, 884
HhaI GCGC 1 cut(s) 506
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 7 cut(s) 17, 580, 601, 617, 835, 865, 1017
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HinfI GANTC 4 cut(s) 244, 344, 676, 686
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 109, 574, 700
Hpy188I TCNGA 5 cut(s) 21, 43, 161, 175, 224
Hpy188III TCNNGA 7 cut(s) 14, 206, 341, 348, 443, 539, 832
Hpy8I GTNNAC 3 cut(s) 109, 574, 700
Hpy99I CGWCG 3 cut(s) 40, 43, 218
HpyAV CCTTC 8 cut(s) 180, 449, 688, 776, 780, 912, 996, 1073
HpyCH4III ACNGT 2 cut(s) 704, 709
HpyCH4V TGCA 7 cut(s) 300, 321, 425, 551, 776, 929, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 773, 884
HpyF3I CTNAG 3 cut(s) 431, 851, 1019
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 7 cut(s) 17, 580, 601, 617, 835, 865, 1017
HspAI GCGC 1 cut(s) 504
Ksp22I TGATCA 2 cut(s) 16, 468
Kzo9I GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
LmnI GCTCC 2 cut(s) 43, 956
Lsp1109I GCAGC 4 cut(s) 422, 437, 836, 941
LweI GCATC 1 cut(s) 1000
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 3 cut(s) 251, 408, 821
MalI GATC 8 cut(s) 6, 18, 226, 335, 470, 543, 849, 1080
MboI GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
MboII GAAGA 5 cut(s) 211, 527, 635, 867, 1073
MflI RGATCY 2 cut(s) 224, 333
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 5 cut(s) 581, 841, 938, 1034, 1044
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 21
Mph1103I ATGCAT 1 cut(s) 1015
MseI TTAA 3 cut(s) 890, 1032, 1047
MslI CAYNNNNRTG 2 cut(s) 12, 899
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 3 cut(s) 76, 239, 489
MvaI CCWGG 3 cut(s) 76, 239, 489
MwoI GCNNNNNNNGC 3 cut(s) 99, 773, 884
NdeI CATATG 1 cut(s) 367
NdeII GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
NlaIII CATG 7 cut(s) 17, 580, 601, 617, 835, 865, 1017
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 5 cut(s) 69, 117, 480, 498, 697
NsiI ATGCAT 1 cut(s) 1015
NspI RCATGY 2 cut(s) 865, 1017
PaeR7I CTCGAG 1 cut(s) 346
PagI TCATGA 2 cut(s) 13, 831
PceI AGGCCT 2 cut(s) 487, 567
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 3 cut(s) 244, 676, 686
Pfl23II CGTACG 1 cut(s) 69
PflFI GACNNNGTC 2 cut(s) 182, 212
PkrI GCNGC 6 cut(s) 52, 427, 437, 651, 826, 931
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PsiI TTATAA 1 cut(s) 743
Psp6I CCWGG 3 cut(s) 74, 237, 487
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 74, 237, 487
PspLI CGTACG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 150, 983
PsuI RGATCY 2 cut(s) 224, 333
PsyI GACNNNGTC 2 cut(s) 182, 212
RsaI GTAC 4 cut(s) 71, 121, 699, 706
RsaNI GTAC 4 cut(s) 70, 120, 698, 705
RseI CAYNNNNRTG 2 cut(s) 12, 899
SaqAI TTAA 3 cut(s) 890, 1032, 1047
SatI GCNGC 6 cut(s) 51, 426, 436, 650, 825, 930
Sau3AI GATC 8 cut(s) 4, 16, 224, 333, 468, 541, 847, 1078
Sau96I GGNCC 2 cut(s) 150, 983
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 76, 239, 489
SduI GDGCHC 1 cut(s) 63
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 1 cut(s) 1000
Sfr274I CTCGAG 1 cut(s) 346
SinI GGWCC 1 cut(s) 983
SlaI CTCGAG 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 12, 899
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 5 cut(s) 581, 841, 938, 1034, 1044
SseBI AGGCCT 2 cut(s) 487, 567
SsiI CCGC 3 cut(s) 50, 273, 650
SspMI CTAG 3 cut(s) 251, 408, 821
StuI AGGCCT 2 cut(s) 487, 567
StyD4I CCNGG 3 cut(s) 74, 237, 487
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 2 cut(s) 704, 709
TaqI TCGA 3 cut(s) 280, 347, 935
TasI AATT 5 cut(s) 581, 841, 938, 1034, 1044
TatI WGTACW 1 cut(s) 704
TauI GCSGC 2 cut(s) 53, 652
TfiI GAWTC 3 cut(s) 244, 676, 686
Tru1I TTAA 3 cut(s) 890, 1032, 1047
Tru9I TTAA 3 cut(s) 890, 1032, 1047
TseI GCWGC 4 cut(s) 425, 435, 824, 929
TspDTI ATGAA 2 cut(s) 770, 848
TspGWI ACGGA 1 cut(s) 145
Tth111I GACNNNGTC 2 cut(s) 182, 212
VpaK11BI GGWCC 1 cut(s) 983
XapI RAATTY 3 cut(s) 581, 938, 1034
XceI RCATGY 2 cut(s) 865, 1017
XhoI CTCGAG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 3 cut(s) 251, 408, 821
Zsp2I ATGCAT 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.