Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Forward (+)

26245543 .. 26247845

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G293800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGTGACCACCAGGCCAAGAGCGAAACTGCGTCGTTGATCGAGCACAGGGCCTACGCCAGGGTGGGCCTGCTTGGGAACCCGAGTGACGTTTATTTCGGCCGGACGATCTCCTTCAGCCTTGGCAACTTCTGGGCCACCGTGTGTTTGCAGCCGTCCGATGATCTCGTCATCCAACCCCACCCCATCCACGACCTCGTCGTTTTCAAATCCCTAGACCACCTGGTGAATCGATTAGATAGTGAGGGTTATTATGGAGGCGTCCGATTGCTGATGGCAATTTGCAAAGTCTTCCTTGATTATTGCAAAGAAAACGAGATTCAGTTAGAGGCTCGAAATTTCACTCTCTCATATGATACTAATATCCCTCGACAGACAGGACTTTCAGGGTCTAGTGCTATTGTCTGTGCAGCCCTGAGCTGCCTTCTTGATTTTTACAAGGTTAGGCATTTGATCAAAGTCGAGGTCCGCCCCGGCCTCGTCCTTAATGCCGAGAAGCAACTTGGAATTGTTGCCGGTCTTCAAGATCGTGTTGCCCAGGTGTATGGTGGCCTTGTTTACATGGAATTTGACAAGGAGCACATGGATACTTCGGGGCATGGCATTTACACACCCATGGATGTTAGTCACCTCCCCCCTCTTCACCTTGTCTATGCCGAGAATCCAAGTGATTCCGGGAAGGTACATAGTACGGTTCGTCAAAGGTGGCTCAATGGCGACGAGTTTATAATATCATCCATGACGGAAGTTGCAAATATTGCACTAGAAGGAAGGACGGCATTACTTGAAAAGGACTACACTAAACTAGCAGCGCTCATGAACCGTAATTTTGACTTTAGAAGAAGCATGTTTGGAGATGATGCTCTCGGCGCTTTAAACATAGAAATGGTGGAGGTGGCCCGAAGTGTGGGTGCAGCATCCAAATTCACAGGTAGTGGTGGGGCTGTAGTCGTATTTTGCCCAGATGGTCCTTCACAAGTGAAGCTCTTAGAGGATGCTTGCCAAAAGGCTGGTTTTAAACTTGAACCGATACAAGTCGTTCCCTCTCTTCTAAATGAGGTTGATCTTCAAACTCTCTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

362

Amino Acids

39.76

Weight (kDa)

5.57

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	728
AciI	CCGC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	337, 566, 923
AcuI	CTGAAG	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	261
AdeI	CACNNNGTG	2 cut(s)	144, 226
AfaI	GTAC	2 cut(s)	684, 691
AfeI	AGCGCT	1 cut(s)	813
AfiI	CCNNNNNNNGG	2 cut(s)	60, 907
AgsI	TTSAA	5 cut(s)	208, 524, 788, 1025, 1070
AjnI	CCWGG	4 cut(s)	12, 59, 222, 537
AluBI	AGCT	2 cut(s)	420, 985
AluI	AGCT	2 cut(s)	420, 985
Alw21I	GWGCWC	2 cut(s)	48, 582
Ama87I	CYCGRG	1 cut(s)	82
Aor51HI	AGCGCT	1 cut(s)	813
AoxI	GGCC	8 cut(s)	15, 51, 67, 100, 135, 475, 550, 897
ApeKI	GCWGC	5 cut(s)	151, 410, 420, 809, 914
ApoI	RAATTY	3 cut(s)	337, 566, 923
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 450, 482
AspLEI	GCGC	2 cut(s)	814, 872
AspS9I	GGNCC	6 cut(s)	51, 67, 135, 466, 898, 968
AsuC2I	CCSGG	2 cut(s)	474, 676
AsuHPI	GGTGA	4 cut(s)	17, 238, 620, 635
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	2 cut(s)	466, 968
BbsI	GAAGAC	2 cut(s)	283, 512
Bbv12I	GWGCWC	2 cut(s)	48, 582
BbvI	GCAGC	5 cut(s)	163, 407, 422, 821, 926
BccI	CCATC	3 cut(s)	194, 268, 959
BceAI	ACGGC	2 cut(s)	139, 792
BciT130I	CCWGG	4 cut(s)	14, 61, 224, 539
BciVI	GTATCC	1 cut(s)	580
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	2 cut(s)	474, 676
BfaI	CTAG	4 cut(s)	215, 393, 764, 806
BfmI	CTRYAG	1 cut(s)	945
BfoI	RGCGCY	2 cut(s)	815, 873
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	5 cut(s)	152, 411, 421, 810, 915
BlsI	GCNGC	5 cut(s)	153, 412, 422, 811, 916
Bme1390I	CCNGG	6 cut(s)	14, 61, 224, 474, 539, 676
Bme18I	GGWCC	2 cut(s)	466, 968
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	6 cut(s)	51, 67, 135, 466, 898, 968
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	6 cut(s)	14, 61, 224, 474, 539, 676
BmsI	GCATC	3 cut(s)	850, 926, 985
BpiI	GAAGAC	2 cut(s)	283, 512
Bpu10I	CCTNAGC	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	474, 676
Bsa29I	ATCGAT	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	60, 121, 472, 537, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 907
Bse118I	RCCGGY	1 cut(s)	515
BseBI	CCWGG	4 cut(s)	14, 61, 224, 539
BseCI	ATCGAT	1 cut(s)	232
BseDI	CCNNGG	5 cut(s)	60, 121, 472, 537, 615
BseGI	GGATG	6 cut(s)	171, 186, 625, 734, 917, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	60, 907
BseMII	CTCAG	1 cut(s)	407
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	5 cut(s)	163, 407, 422, 821, 926
BsgI	GTGCAG	2 cut(s)	429, 933
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	8 cut(s)	17, 53, 69, 102, 137, 477, 552, 899
BshVI	ATCGAT	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	2 cut(s)	48, 582
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	4 cut(s)	103, 474, 516, 675
BslI	CCNNNNNNNGG	2 cut(s)	60, 907
BsnI	GGCC	8 cut(s)	17, 53, 69, 102, 137, 477, 552, 899
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	48, 582
Bsp143I	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	1 cut(s)	469
BspANI	GGCC	8 cut(s)	17, 53, 69, 102, 137, 477, 552, 899
BspCNI	CTCAG	1 cut(s)	408
BspDI	ATCGAT	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	5 cut(s)	60, 121, 472, 537, 615
BssMI	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	121, 615
Bst2UI	CCWGG	4 cut(s)	14, 61, 224, 539
Bst4CI	ACNGT	3 cut(s)	142, 694, 824
Bst6I	CTCTTC	2 cut(s)	645, 1053
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	71, 1000
BstDEI	CTNAG	2 cut(s)	416, 988
BstDSI	CCRYGG	1 cut(s)	615
BstEII	GGTNACC	1 cut(s)	5
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	6 cut(s)	171, 186, 625, 734, 917, 1000
BstH2I	RGCGCY	2 cut(s)	815, 873
BstHHI	GCGC	2 cut(s)	814, 872
BstKTI	GATC	6 cut(s)	42, 111, 166, 456, 529, 1066
BstMBI	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	758, 869
BstNI	CCWGG	4 cut(s)	14, 61, 224, 539
BstNSI	RCATGY	1 cut(s)	850
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	6 cut(s)	12, 59, 222, 472, 537, 674
BstSFI	CTRYAG	1 cut(s)	945
BstV1I	GCAGC	5 cut(s)	163, 407, 422, 821, 926
BstV2I	GAAGAC	2 cut(s)	283, 512
BstXI	CCANNNNNNTGG	2 cut(s)	545, 1010
BstZI	CGGCCG	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	8 cut(s)	17, 53, 69, 102, 137, 477, 552, 899
BsuTUI	ATCGAT	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	6 cut(s)	171, 186, 625, 734, 917, 1000
Cac8I	GCNNGC	2 cut(s)	71, 1000
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	2 cut(s)	814, 872
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	6 cut(s)	51, 67, 135, 466, 898, 968
ClaI	ATCGAT	1 cut(s)	232
CseI	GACGC	2 cut(s)	21, 250
CsiI	ACCWGGT	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	683, 690
CviAII	CATG	7 cut(s)	562, 583, 599, 616, 739, 817, 847
CviQI	GTAC	2 cut(s)	683, 690
DdeI	CTNAG	2 cut(s)	416, 988
DpnI	GATC	6 cut(s)	41, 110, 165, 455, 528, 1065
DpnII	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
DraI	TTTAAA	2 cut(s)	876, 1018
DraIII	CACNNNGTG	2 cut(s)	144, 226
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	645, 1053
EarI	CTCTTC	2 cut(s)	645, 1053
EciI	GGCGGA	1 cut(s)	458
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	121, 615
Eco47I	GGWCC	2 cut(s)	466, 968
Eco47III	AGCGCT	1 cut(s)	813
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	82
Eco91I	GGTNACC	1 cut(s)	5
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	4 cut(s)	12, 59, 222, 537
EcoT14I	CCWWGG	2 cut(s)	121, 615
ErhI	CCWWGG	2 cut(s)	121, 615
FaeI	CATG	7 cut(s)	565, 586, 602, 619, 742, 820, 850
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	7 cut(s)	561, 582, 598, 615, 738, 816, 846
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	5 cut(s)	152, 411, 421, 810, 915
FokI	GGATG	6 cut(s)	158, 173, 632, 721, 904, 1007
Fsp4HI	GCNGC	5 cut(s)	152, 411, 421, 810, 915
FspBI	CTAG	4 cut(s)	215, 393, 764, 806
GlaI	GCGC	2 cut(s)	813, 871
GluI	GCNGC	5 cut(s)	152, 411, 421, 810, 915
HaeII	RGCGCY	2 cut(s)	815, 873
HaeIII	GGCC	8 cut(s)	17, 53, 69, 102, 137, 477, 552, 899
HapII	CCGG	4 cut(s)	103, 474, 516, 675
HgaI	GACGC	2 cut(s)	21, 250
HhaI	GCGC	2 cut(s)	814, 872
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	7 cut(s)	565, 586, 602, 619, 742, 820, 850
Hin6I	GCGC	2 cut(s)	812, 870
HinP1I	GCGC	2 cut(s)	812, 870
HinfI	GANTC	4 cut(s)	229, 319, 661, 671
HpaII	CCGG	4 cut(s)	103, 474, 516, 675
HphI	GGTGA	4 cut(s)	17, 238, 620, 635
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	160, 266
Hpy188III	TCNNGA	3 cut(s)	428, 524, 817
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	3 cut(s)	37, 203, 722
HpyAV	CCTTC	6 cut(s)	124, 434, 673, 761, 765, 981
HpyCH4III	ACNGT	3 cut(s)	142, 694, 824
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	7 cut(s)	151, 285, 306, 410, 752, 761, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	758, 869
HpyF3I	CTNAG	2 cut(s)	416, 988
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	565, 586, 602, 619, 742, 820, 850
HspAI	GCGC	2 cut(s)	812, 870
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	5 cut(s)	163, 407, 422, 821, 926
LweI	GCATC	3 cut(s)	850, 926, 985
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	4 cut(s)	215, 393, 764, 806
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	5, 86, 626
MalI	GATC	6 cut(s)	41, 110, 165, 455, 528, 1065
MboI	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
MboII	GAAGA	6 cut(s)	283, 512, 632, 852, 1040, 1058
MhlI	GDGCHC	2 cut(s)	48, 582
MluCI	AATT	6 cut(s)	279, 337, 507, 566, 826, 923
MmeI	TCCRAC	1 cut(s)	199
MseI	TTAA	3 cut(s)	486, 875, 1017
MslI	CAYNNNNRTG	2 cut(s)	614, 884
MspI	CCGG	4 cut(s)	103, 474, 516, 675
MspR9I	CCNGG	6 cut(s)	14, 61, 224, 474, 539, 676
MvaI	CCWGG	4 cut(s)	14, 61, 224, 539
MwoI	GCNNNNNNNGC	2 cut(s)	758, 869
NciI	CCSGG	2 cut(s)	474, 676
NcoI	CCATGG	1 cut(s)	615
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
NlaIII	CATG	7 cut(s)	565, 586, 602, 619, 742, 820, 850
NlaIV	GGNNCC	1 cut(s)	80
NmeAIII	GCCGAG	3 cut(s)	517, 682, 846
NmuCI	GTSAC	3 cut(s)	5, 86, 626
NspI	RCATGY	1 cut(s)	850
PagI	TCATGA	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	229, 319, 661, 671
PflFI	GACNNNGTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	674
PkrI	GCNGC	5 cut(s)	153, 412, 422, 811, 916
PsiI	TTATAA	1 cut(s)	728
Psp6I	CCWGG	4 cut(s)	12, 59, 222, 537
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	4 cut(s)	12, 59, 222, 537
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	6 cut(s)	51, 67, 135, 466, 898, 968
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	2 cut(s)	684, 691
RsaNI	GTAC	2 cut(s)	683, 690
RseI	CAYNNNNRTG	2 cut(s)	614, 884
SaqAI	TTAA	3 cut(s)	486, 875, 1017
SatI	GCNGC	5 cut(s)	152, 411, 421, 810, 915
Sau3AI	GATC	6 cut(s)	39, 108, 163, 453, 526, 1063
Sau96I	GGNCC	6 cut(s)	51, 67, 135, 466, 898, 968
ScrFI	CCNGG	6 cut(s)	14, 61, 224, 474, 539, 676
SduI	GDGCHC	2 cut(s)	48, 582
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	3 cut(s)	850, 926, 985
SfcI	CTRYAG	1 cut(s)	945
SinI	GGWCC	2 cut(s)	466, 968
SmiMI	CAYNNNNRTG	2 cut(s)	614, 884
Sse9I	AATT	6 cut(s)	279, 337, 507, 566, 826, 923
SsiI	CCGC	1 cut(s)	469
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	4 cut(s)	215, 393, 764, 806
StyD4I	CCNGG	6 cut(s)	12, 59, 222, 472, 537, 674
StyI	CCWWGG	2 cut(s)	121, 615
TaaI	ACNGT	3 cut(s)	142, 694, 824
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	5 cut(s)	42, 232, 334, 370, 462
TasI	AATT	6 cut(s)	279, 337, 507, 566, 826, 923
TfiI	GAWTC	4 cut(s)	229, 319, 661, 671
Tru1I	TTAA	3 cut(s)	486, 875, 1017
Tru9I	TTAA	3 cut(s)	486, 875, 1017
TseFI	GTSAC	3 cut(s)	5, 86, 626
TseI	GCWGC	5 cut(s)	151, 410, 420, 809, 914
Tsp45I	GTSAC	3 cut(s)	5, 86, 626
TspDTI	ATGAA	1 cut(s)	833
TspGWI	ACGGA	1 cut(s)	758
Tth111I	GACNNNGTC	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	466, 968
XagI	CCTNNNNNAGG	1 cut(s)	58
XapI	RAATTY	3 cut(s)	337, 566, 923
XceI	RCATGY	1 cut(s)	850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XspI	CTAG	4 cut(s)	215, 393, 764, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.