Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010961.1

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

21129 .. 23173

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010961.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggatcatcatcgtgatcagaatagcgaaacggcgtcgtcggagccggcggccatagagcacagggcctacgccagggtgggtctgctcggcaaccccagcgatgtctactatggctgtacgatctctttcagcctcggcaacttctgggcctccgtccgattacacccctccgatgacctcgtcatccagccccaccccacccacgacctcgtcgtcttcagatctctcccccacctggtgaatcggctagacaatgagggttattatggcggtgttcgattactgatggcgatttgcaaagtgttttttgattattgcaaggaaaaagagatccatctggactcgagaaacttcactctctcatatgatactaatatccctcgccagatgggactatcggggtctagtgctattgtgtgtgcagcccttagctgccttcttgacttctacaaggttaggcatttgatcaaagtggaggtcaggcctggcattgtcctcggcgcggagaaacagctcggcattgttgctggtcttcaagatcgggttgcacaggtttatggaggccttgtttacatggtacacagtacagttcgccaaaggtggctcaatggcgatgagtttataatatcatcaatgaaagaagtagcagatattgcacaagaaggaaggaaagccttacttgaaaaggactacactaaactagcagctctcatgaactctaattttgatcttagaagacgcatgtttggagatgacgctcttggtggtttaaacatagaaatggtagaggtcgcccgaagggtgggtgcagcctcgaaattcacaggtagtggaggagctgtggttgtattttgccctgatggtccttcacaagtgaagctattggaggatgcatgtctaagtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

303

Amino Acids

33.48

Weight (kDa)

6.36

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AasI	GACNNNNNNGTC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	506
AciI	CCGC	3 cut(s)	50, 273, 506
AclWI	GGATC	2 cut(s)	12, 328
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	821
AcuI	CTGAAG	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	35
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	3 cut(s)	121, 582, 589
AfiI	CCNNNNNNNGG	4 cut(s)	75, 238, 505, 805
AgsI	TTSAA	2 cut(s)	539, 686
AjnI	CCWGG	3 cut(s)	74, 237, 487
AluBI	AGCT	5 cut(s)	435, 517, 710, 842, 883
AluI	AGCT	5 cut(s)	435, 517, 710, 842, 883
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	12, 328
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	5 cut(s)	51, 66, 150, 485, 565
ApeKI	GCWGC	4 cut(s)	425, 435, 707, 812
ApoI	RAATTY	1 cut(s)	821
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	3 cut(s)	66, 150, 866
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	866
BbsI	GAAGAC	3 cut(s)	211, 527, 745
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	422, 437, 719, 824
BccI	CCATC	4 cut(s)	283, 345, 385, 857
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	3 cut(s)	76, 239, 489
BclI	TGATCA	2 cut(s)	16, 468
BfaI	CTAG	3 cut(s)	251, 408, 704
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	5 cut(s)	51, 426, 436, 708, 813
BlsI	GCNGC	5 cut(s)	52, 427, 437, 709, 814
Bme1390I	CCNGG	3 cut(s)	76, 239, 489
Bme18I	GGWCC	1 cut(s)	866
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	66, 150, 866
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	3 cut(s)	76, 239, 489
BmsI	GCATC	1 cut(s)	883
BpiI	GAAGAC	3 cut(s)	211, 527, 745
Bpu10I	CCTNAGC	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	75, 136, 499
BsaXI	ACNNNNNCTCC	6 cut(s)	555, 585, 828, 831, 858, 861
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 238, 505, 805
Bse118I	RCCGGY	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	76, 239, 489
BseDI	CCNNGG	3 cut(s)	75, 136, 499
BseGI	GGATG	2 cut(s)	186, 898
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	4 cut(s)	75, 238, 505, 805
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	4 cut(s)	422, 437, 719, 824
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	2 cut(s)	444, 831
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	5 cut(s)	53, 68, 152, 487, 567
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	4 cut(s)	75, 238, 505, 805
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	5 cut(s)	53, 68, 152, 487, 567
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
BspACI	CCGC	3 cut(s)	50, 273, 506
BspANI	GGCC	5 cut(s)	53, 68, 152, 487, 567
BspFNI	CGCG	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	12, 328
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	75, 136, 499
BssMI	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	3 cut(s)	76, 239, 489
Bst4CI	ACNGT	2 cut(s)	587, 592
BstACI	GRCGYC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	431, 734, 902
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	186, 898
BstFNI	CGCG	1 cut(s)	506
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	8 cut(s)	7, 19, 126, 227, 336, 471, 544, 733
BstMBI	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 656
BstNI	CCWGG	3 cut(s)	76, 239, 489
BstNSI	RCATGY	2 cut(s)	748, 900
BstSCI	CCNGG	3 cut(s)	74, 237, 487
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	4 cut(s)	422, 437, 719, 824
BstV2I	GAAGAC	3 cut(s)	211, 527, 745
BstX2I	RGATCY	2 cut(s)	224, 333
BstYI	RGATCY	2 cut(s)	224, 333
BsuRI	GGCC	5 cut(s)	53, 68, 152, 487, 567
BtgZI	GCGATG	2 cut(s)	117, 630
BtsCI	GGATG	2 cut(s)	186, 898
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	1 cut(s)	506
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	66, 150, 866
CseI	GACGC	3 cut(s)	24, 750, 767
CsiI	ACCWGGT	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	120, 581, 588
CviAII	CATG	4 cut(s)	577, 715, 745, 897
CviQI	GTAC	3 cut(s)	120, 581, 588
DdeI	CTNAG	3 cut(s)	431, 734, 902
DpnI	GATC	8 cut(s)	6, 18, 125, 226, 335, 470, 543, 732
DpnII	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
DraI	TTTAAA	1 cut(s)	774
DraIII	CACNNNGTG	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	51
Eco147I	AGGCCT	2 cut(s)	487, 567
Eco47I	GGWCC	1 cut(s)	866
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	3 cut(s)	74, 237, 487
EcoT22I	ATGCAT	1 cut(s)	898
FaeI	CATG	4 cut(s)	580, 718, 748, 900
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	4 cut(s)	576, 714, 744, 896
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	2 cut(s)	16, 468
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	5 cut(s)	51, 426, 436, 708, 813
FokI	GGATG	2 cut(s)	173, 905
Fsp4HI	GCNGC	5 cut(s)	51, 426, 436, 708, 813
FspBI	CTAG	3 cut(s)	251, 408, 704
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	5 cut(s)	51, 426, 436, 708, 813
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	5 cut(s)	53, 68, 152, 487, 567
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	3 cut(s)	24, 750, 767
HhaI	GCGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	580, 718, 748, 900
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HinfI	GANTC	2 cut(s)	244, 344
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	109, 574, 583
Hpy188I	TCNGA	5 cut(s)	21, 43, 161, 175, 224
Hpy188III	TCNNGA	6 cut(s)	14, 341, 348, 443, 539, 715
Hpy8I	GTNNAC	3 cut(s)	109, 574, 583
Hpy99I	CGWCG	3 cut(s)	40, 43, 218
HpyAV	CCTTC	5 cut(s)	449, 659, 663, 795, 879
HpyCH4III	ACNGT	2 cut(s)	587, 592
HpyCH4V	TGCA	7 cut(s)	300, 321, 425, 551, 659, 812, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 656
HpyF3I	CTNAG	3 cut(s)	431, 734, 902
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	580, 718, 748, 900
HspAI	GCGC	1 cut(s)	504
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	2 cut(s)	16, 468
Kzo9I	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
LmnI	GCTCC	2 cut(s)	43, 839
Lsp1109I	GCAGC	4 cut(s)	422, 437, 719, 824
LweI	GCATC	1 cut(s)	883
MabI	ACCWGGT	1 cut(s)	237
MaeI	CTAG	3 cut(s)	251, 408, 704
MalI	GATC	8 cut(s)	6, 18, 125, 226, 335, 470, 543, 732
MboI	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
MboII	GAAGA	3 cut(s)	211, 527, 750
MflI	RGATCY	2 cut(s)	224, 333
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	724, 821
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	21
Mph1103I	ATGCAT	1 cut(s)	898
MroNI	GCCGGC	1 cut(s)	46
MseI	TTAA	2 cut(s)	773, 910
MslI	CAYNNNNRTG	2 cut(s)	12, 782
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	76, 239, 489
MssI	GTTTAAAC	1 cut(s)	774
MvaI	CCWGG	3 cut(s)	76, 239, 489
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	99, 656
NaeI	GCCGGC	1 cut(s)	48
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	580, 718, 748, 900
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	4 cut(s)	69, 117, 480, 498
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	2 cut(s)	748, 900
PaeR7I	CTCGAG	1 cut(s)	346
PagI	TCATGA	1 cut(s)	714
PceI	AGGCCT	2 cut(s)	487, 567
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	244
PflFI	GACNNNGTC	2 cut(s)	182, 212
PkrI	GCNGC	5 cut(s)	52, 427, 437, 709, 814
PleI	GAGTC	1 cut(s)	338
PmeI	GTTTAAAC	1 cut(s)	774
PpsI	GAGTC	1 cut(s)	338
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	3 cut(s)	74, 237, 487
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	74, 237, 487
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	66, 150, 866
PsuI	RGATCY	2 cut(s)	224, 333
PsyI	GACNNNGTC	2 cut(s)	182, 212
RsaI	GTAC	3 cut(s)	121, 582, 589
RsaNI	GTAC	3 cut(s)	120, 581, 588
RseI	CAYNNNNRTG	2 cut(s)	12, 782
SaqAI	TTAA	2 cut(s)	773, 910
SatI	GCNGC	5 cut(s)	51, 426, 436, 708, 813
Sau3AI	GATC	8 cut(s)	4, 16, 123, 224, 333, 468, 541, 730
Sau96I	GGNCC	3 cut(s)	66, 150, 866
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	3 cut(s)	76, 239, 489
SduI	GDGCHC	1 cut(s)	63
SexAI	ACCWGGT	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	883
Sfr274I	CTCGAG	1 cut(s)	346
SinI	GGWCC	1 cut(s)	866
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	12, 782
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	724, 821
SseBI	AGGCCT	2 cut(s)	487, 567
SsiI	CCGC	3 cut(s)	50, 273, 506
SspMI	CTAG	3 cut(s)	251, 408, 704
StuI	AGGCCT	2 cut(s)	487, 567
StyD4I	CCNGG	3 cut(s)	74, 237, 487
TaaI	ACNGT	2 cut(s)	587, 592
TaqI	TCGA	3 cut(s)	280, 347, 818
TasI	AATT	2 cut(s)	724, 821
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	773, 910
Tru9I	TTAA	2 cut(s)	773, 910
TseI	GCWGC	4 cut(s)	425, 435, 707, 812
TspDTI	ATGAA	2 cut(s)	653, 731
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	2 cut(s)	182, 212
VpaK11BI	GGWCC	1 cut(s)	866
XagI	CCTNNNNNAGG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	821
XceI	RCATGY	2 cut(s)	748, 900
XhoI	CTCGAG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	3 cut(s)	251, 408, 704
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.