Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1150244 .. 1152168

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01930.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGATATGGACGACCACCAGACGTCGTCGTCGGAAGCGGCGGTGATCCAACACAGGGCGTACGCCAGGGTTGGGCTGCTTGGTAACCCGAGCGACGTCTACTACGGCCGCACGATCTCCTTCAGCGTCGGAAACTTCTGGGCCATCGTAAGGTTGCAGCCGTCCGATGATCTCGTCATCCAGCCCCACCCCACCCACGACCTCGTCGTCTTCCGATCCCTCGATCACCTGGTGAATCGGTTAGGTAGTGAAGGATATTATGGAGGTGTTCGATTGTTGATGGCGATTTGCAAAGTGTTCTTCGATTATTGCAAGGAAAATGAGATCGAATTGGAAGCTCGAAATTTCGCTCTCTCGTATGATACCAATATCCCTCGCCAGACAGGACTTTCGGGATCTAGTGCGATTGTGTGTGCAGCCCTGAGCTGCCTTCTTGACTTCCACAAGGTTAGGCATTTAATCAAAGTGGAGGTCCGCCCCGGCCTCGTCCTTAGTGCCGAGAAGCAACTTGGCATTGTTGCCGGTCTTCAAGATCGCGTGGCACAGGTTTATGGCGGCCTCGTTTACATGGAATTTGCCAAGGAAAACATGGATACTTTGGGGCATGGAATTTACTCACCCATGGATGTTAGTCTTCTCCCGCCTCTTCACCTCATCTATGCCGAGAATCCAAGTGATTCTGGGAAGGTACATAGTACCGTTCGTCAAAGGTGGCTCAACGGTGATGAGTTTATAATATCATCAATGACAGAAGTCGCAAATATTGCACTAGAAGGAAGGACGGCCTTACTTGAAAAGGACTACACTAAATTAGCTTCTCTCATGAACAGAAATTTTGACCTTAGAAGAGGCATGTTTGGAGACGATGCTTTGGGTGCTTTAAACATAGAAATGGTGGAGGTAGCCCGAAGGGTGGGTGCAGCATCCAAGTTCACAGGTAGCGGAGGGGCAGTCGTCGTATTTTGTCCCGATGGTCCTTCACAAGTGAAAATCTTGGAGGACGAGTGTCAAAAGGCTGGCTTTAAACTCGAACCGATAGAAGTCATTCCCTCTCTTCTAAACGAGGTTGATCTACAAACCTTATCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

364

Amino Acids

40.01

Weight (kDa)

5.41

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	2 cut(s)	28, 206
AatII	GACGTC	2 cut(s)	26, 99
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	537
AciI	CCGC	7 cut(s)	38, 41, 109, 475, 555, 641, 942
AclWI	GGATC	3 cut(s)	40, 210, 403
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	4 cut(s)	343, 572, 609, 832
AcuI	CTGAAG	1 cut(s)	106
AcyI	GRCGYC	2 cut(s)	23, 96
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	3 cut(s)	62, 690, 697
AfiI	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
AgsI	TTSAA	2 cut(s)	530, 794
AjnI	CCWGG	2 cut(s)	65, 228
AluBI	AGCT	3 cut(s)	338, 426, 815
AluI	AGCT	3 cut(s)	338, 426, 815
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	3 cut(s)	40, 210, 403
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	5 cut(s)	106, 141, 481, 556, 783
ApeKI	GCWGC	5 cut(s)	76, 157, 416, 426, 920
ApoI	RAATTY	4 cut(s)	343, 572, 609, 832
ArsI	GACNNNNNNTTYG	4 cut(s)	373, 405, 456, 488
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspS9I	GGNCC	3 cut(s)	141, 472, 974
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	6 cut(s)	55, 218, 244, 609, 641, 734
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	472, 974
BbsI	GAAGAC	3 cut(s)	202, 518, 626
BbvI	GCAGC	5 cut(s)	63, 169, 413, 428, 932
BccI	CCATC	3 cut(s)	152, 274, 965
BceAI	ACGGC	3 cut(s)	121, 145, 798
BciT130I	CCWGG	2 cut(s)	67, 230
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	2 cut(s)	399, 770
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	8 cut(s)	39, 77, 109, 158, 417, 427, 556, 921
BlsI	GCNGC	8 cut(s)	40, 78, 110, 159, 418, 428, 557, 922
Bme1390I	CCNGG	3 cut(s)	67, 230, 480
Bme18I	GGWCC	2 cut(s)	472, 974
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	3 cut(s)	141, 472, 974
BmrFI	CCNGG	3 cut(s)	67, 230, 480
BmsI	GCATC	2 cut(s)	856, 932
BoxI	GACNNNNGTC	2 cut(s)	752, 1005
BpiI	GAAGAC	3 cut(s)	202, 518, 626
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	23, 96
BsaJI	CCNNGG	4 cut(s)	66, 478, 579, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	936, 966, 989, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
Bse118I	RCCGGY	1 cut(s)	521
BseBI	CCWGG	2 cut(s)	67, 230
BseDI	CCNNGG	4 cut(s)	66, 478, 579, 621
BseGI	GGATG	3 cut(s)	177, 631, 923
BseLI	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
BseMII	CTCAG	1 cut(s)	413
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	5 cut(s)	63, 169, 413, 428, 932
BsgI	GTGCAG	2 cut(s)	435, 939
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	480, 522
BsiWI	CGTACG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	951
BslI	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
BsmAI	GTCTC	1 cut(s)	855
BsmBI	CGTCTC	1 cut(s)	855
BsmFI	GGGAC	1 cut(s)	951
BsnI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BsoBI	CYCGRG	1 cut(s)	88
Bsp143I	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	7 cut(s)	38, 41, 109, 475, 555, 641, 942
BspANI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	822
BspPI	GGATC	3 cut(s)	40, 210, 403
BsrFI	RCCGGY	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	66, 478, 579, 621
BssMI	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
BssNI	GRCGYC	2 cut(s)	23, 96
BssT1I	CCWWGG	2 cut(s)	579, 621
Bst2UI	CCWGG	2 cut(s)	67, 230
Bst4CI	ACNGT	2 cut(s)	700, 722
Bst6I	CTCTTC	3 cut(s)	651, 841, 1059
BstACI	GRCGYC	2 cut(s)	23, 96
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	1 cut(s)	1018
BstDEI	CTNAG	3 cut(s)	422, 491, 842
BstDSI	CCRYGG	1 cut(s)	621
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	3 cut(s)	177, 631, 923
BstFNI	CGCG	1 cut(s)	537
BstKTI	GATC	9 cut(s)	48, 117, 172, 218, 226, 327, 398, 535, 1072
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	764, 875
BstNI	CCWGG	2 cut(s)	67, 230
BstNSI	RCATGY	1 cut(s)	856
BstPAI	GACNNNNGTC	2 cut(s)	752, 1005
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	3 cut(s)	65, 228, 478
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	5 cut(s)	63, 169, 413, 428, 932
BstV2I	GAAGAC	3 cut(s)	202, 518, 626
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BstZI	CGGCCG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	3 cut(s)	177, 631, 923
Cac8I	GCNNGC	1 cut(s)	1018
CciI	TCATGA	1 cut(s)	822
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	3 cut(s)	141, 472, 974
CseI	GACGC	1 cut(s)	115
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	61, 689, 696
CviAII	CATG	6 cut(s)	568, 589, 605, 622, 823, 853
CviQI	GTAC	3 cut(s)	61, 689, 696
DdeI	CTNAG	3 cut(s)	422, 491, 842
DpnI	GATC	9 cut(s)	47, 116, 171, 217, 225, 326, 397, 534, 1071
DpnII	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
DraI	TTTAAA	2 cut(s)	882, 1024
DraIII	CACNNNGTG	1 cut(s)	232
DrdI	GACNNNNNNGTC	2 cut(s)	28, 206
DseDI	GACNNNNNNGTC	2 cut(s)	28, 206
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	651, 841, 1059
EarI	CTCTTC	3 cut(s)	651, 841, 1059
EciI	GGCGGA	1 cut(s)	464
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	579, 621
Eco47I	GGWCC	2 cut(s)	472, 974
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	65, 228
EcoT14I	CCWWGG	2 cut(s)	579, 621
ErhI	CCWWGG	2 cut(s)	579, 621
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	1 cut(s)	951
FatI	CATG	6 cut(s)	567, 588, 604, 621, 822, 852
FauI	CCCGC	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	8 cut(s)	39, 77, 109, 158, 417, 427, 556, 921
FokI	GGATG	3 cut(s)	164, 638, 910
Fsp4HI	GCNGC	8 cut(s)	39, 77, 109, 158, 417, 427, 556, 921
FspBI	CTAG	2 cut(s)	399, 770
GluI	GCNGC	8 cut(s)	39, 77, 109, 158, 417, 427, 556, 921
HaeIII	GGCC	5 cut(s)	108, 143, 483, 558, 785
HapII	CCGG	2 cut(s)	480, 522
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	2 cut(s)	23, 96
Hin1II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
HinfI	GANTC	3 cut(s)	235, 667, 677
HpaII	CCGG	2 cut(s)	480, 522
HphI	GGTGA	6 cut(s)	55, 218, 244, 609, 641, 734
Hpy166II	GTNNAC	3 cut(s)	100, 565, 933
Hpy188I	TCNGA	4 cut(s)	34, 131, 166, 215
Hpy188III	TCNNGA	5 cut(s)	393, 434, 530, 823, 968
Hpy8I	GTNNAC	3 cut(s)	100, 565, 933
Hpy99I	CGWCG	7 cut(s)	28, 31, 34, 98, 131, 209, 959
HpyAV	CCTTC	8 cut(s)	130, 245, 440, 679, 767, 771, 903, 987
HpyCH4III	ACNGT	2 cut(s)	700, 722
HpyCH4IV	ACGT	2 cut(s)	23, 96
HpyCH4V	TGCA	6 cut(s)	157, 291, 312, 416, 767, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	764, 875
HpyF3I	CTNAG	3 cut(s)	422, 491, 842
HpySE526I	ACGT	2 cut(s)	23, 96
Hsp92I	GRCGYC	2 cut(s)	23, 96
Hsp92II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
Kzo9I	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
Lsp1109I	GCAGC	5 cut(s)	63, 169, 413, 428, 932
LweI	GCATC	2 cut(s)	856, 932
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	2 cut(s)	399, 770
MaeII	ACGT	2 cut(s)	23, 96
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	9 cut(s)	47, 116, 171, 217, 225, 326, 397, 534, 1071
MboI	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
MboII	GAAGA	7 cut(s)	202, 292, 518, 626, 638, 858, 1046
MflI	RGATCY	1 cut(s)	395
MluCI	AATT	6 cut(s)	329, 343, 572, 609, 809, 832
MmeI	TCCRAC	3 cut(s)	12, 73, 109
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	3 cut(s)	458, 881, 1023
MslI	CAYNNNNRTG	1 cut(s)	890
MspI	CCGG	2 cut(s)	480, 522
MspR9I	CCNGG	3 cut(s)	67, 230, 480
MvaI	CCWGG	2 cut(s)	67, 230
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	764, 875
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
NlaIII	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
NmeAIII	GCCGAG	2 cut(s)	523, 688
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	3 cut(s)	235, 667, 677
Pfl23II	CGTACG	1 cut(s)	60
PflFI	GACNNNGTC	2 cut(s)	25, 203
PkrI	GCNGC	8 cut(s)	40, 78, 110, 159, 418, 428, 557, 922
PshAI	GACNNNNGTC	2 cut(s)	752, 1005
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	2 cut(s)	65, 228
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	2 cut(s)	65, 228
PspLI	CGTACG	1 cut(s)	60
PspPI	GGNCC	3 cut(s)	141, 472, 974
PsuI	RGATCY	1 cut(s)	395
PsyI	GACNNNGTC	2 cut(s)	25, 203
RsaI	GTAC	3 cut(s)	62, 690, 697
RsaNI	GTAC	3 cut(s)	61, 689, 696
RseI	CAYNNNNRTG	1 cut(s)	890
SaqAI	TTAA	3 cut(s)	458, 881, 1023
SatI	GCNGC	8 cut(s)	39, 77, 109, 158, 417, 427, 556, 921
Sau3AI	GATC	9 cut(s)	45, 114, 169, 215, 223, 324, 395, 532, 1069
Sau96I	GGNCC	3 cut(s)	141, 472, 974
ScrFI	CCNGG	3 cut(s)	67, 230, 480
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	856, 932
SinI	GGWCC	2 cut(s)	472, 974
SmiMI	CAYNNNNRTG	1 cut(s)	890
Sse9I	AATT	6 cut(s)	329, 343, 572, 609, 809, 832
SsiI	CCGC	7 cut(s)	38, 41, 109, 475, 555, 641, 942
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	2 cut(s)	399, 770
StyD4I	CCNGG	3 cut(s)	65, 228, 478
StyI	CCWWGG	2 cut(s)	579, 621
TaaI	ACNGT	2 cut(s)	700, 722
TaiI	ACGT	2 cut(s)	26, 99
TaqI	TCGA	6 cut(s)	222, 271, 303, 327, 340, 1029
TasI	AATT	6 cut(s)	329, 343, 572, 609, 809, 832
TauI	GCSGC	3 cut(s)	41, 111, 558
TfiI	GAWTC	3 cut(s)	235, 667, 677
Tru1I	TTAA	3 cut(s)	458, 881, 1023
Tru9I	TTAA	3 cut(s)	458, 881, 1023
TseI	GCWGC	5 cut(s)	76, 157, 416, 426, 920
TspDTI	ATGAA	1 cut(s)	839
Tth111I	GACNNNGTC	2 cut(s)	25, 203
VpaK11BI	GGWCC	2 cut(s)	472, 974
XapI	RAATTY	4 cut(s)	343, 572, 609, 832
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	2 cut(s)	399, 770
ZraI	GACGTC	2 cut(s)	24, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.