Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

38327479 .. 38330467

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGATCGTCATCAGAATACCGAAACGGCGTCGTCGGAGGCGGCCACCATCGAGCACCGAGCCTACGCCAGGGTTGGTCTGCTCGGCAACCCCAGCGATGTCTACTACGGCCGTACGATCTCCTTCAGCCTCGGCAACTTCTGGGCCTCTGTCAAATTACACCCCTCCGATGAGCTCGTCATCCAGCCCCACCCCACTCACGACCTCGTCGTCTTCAGATCTCTCCCCCACCTGGTGAATCGTCTTGATAATGAGGGCTATTACGGCGGTGTCCGATTACTGATGGCGATTTGCAAAGTGTTTTCCGATTATTGCAAGGAGAAAGGGATCCATCTCGACTCGAGAAATTTCACTCTCTCGTATGATACTAATATCCCTCGCCAGACGGGGCTTTCGGGGTCTAGTGCTATTGTGTGTGCTGCTCTTAGCTGCCTTCTTGACTTCTATAATGTGAGGCATTTGATCAAAGTGGAGGTCAGGCCTGGCATTGTCCTCGAAGCGGAGAAACAGCTTGGGATTGTTGCTGGTCTTCAGGATCGGGTTGCGCAGGTTTATGGAGGCCTTGTTTACATGGAATTCGGCAAGGAACACATGGATAGTTTGGGGCATGGCATTTACACACCCATGGACGTTAGTCTCCTCCCGCCTCTATATCTCATATATGCCGAGAATCCAAGCGATTCTGGGAAGGTACACAGTACAGTTCGCCAAAGGTGGCTCAGTGGCGACGAGCTTATAATATCATCAATGAAAGAAGTTGCAGATATTGCAAAAGAAGGAAGGACAGCCTTACTCGAAAAGGACTACACTAAACTAGCAGCTCTCATGAACTCTAATTTTGATCTTAGAAGACGCATGTTTGGAGATGATGCTCTTGGTGCTTTAAACATAGAAATGGTAGAGGTCGCTCGAAGGGTTGGTGCAGCCTCGAAATTCACAGGTAGTGGAGGAGCTGTGGTTGTATTTTGTCCTGATGGCCCTTCACAAGTGAAGCTATTAGAGGAAGCATGTCTAAGTGCTGGTTTTAAACTTGAACCAATTAAAGTGATTCCGTCTCTTCTTAATGAGGTTGATCTTCAAACCCTGTCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

365

Amino Acids

40.09

Weight (kDa)

6.01

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	101 - 187	2.6e-10	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc16I	TGCGCA	1 cut(s)	546
Acc36I	ACCTGC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	4 cut(s)	41, 267, 500, 644
AclWI	GGATC	4 cut(s)	12, 322, 335, 543
AcoI	YGGCCR	2 cut(s)	42, 109
AcsI	RAATTY	3 cut(s)	346, 575, 932
AcuI	CTGAAG	3 cut(s)	109, 199, 515
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	3 cut(s)	115, 693, 700
AfiI	CCNNNNNNNGG	3 cut(s)	69, 232, 499
AgsI	TTSAA	2 cut(s)	1034, 1079
AjnI	CCWGG	3 cut(s)	68, 231, 481
AluBI	AGCT	7 cut(s)	175, 429, 511, 733, 821, 953, 994
AluI	AGCT	7 cut(s)	175, 429, 511, 733, 821, 953, 994
Alw21I	GWGCWC	2 cut(s)	57, 177
Alw26I	GTCTC	2 cut(s)	641, 1059
AlwI	GGATC	4 cut(s)	12, 322, 335, 543
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	6 cut(s)	42, 109, 144, 479, 559, 976
ApeKI	GCWGC	4 cut(s)	419, 429, 818, 923
ApoI	RAATTY	3 cut(s)	346, 575, 932
ArsI	GACNNNNNNTTYG	4 cut(s)	376, 408, 459, 491
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	2 cut(s)	144, 977
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	3 cut(s)	205, 521, 856
Bbv12I	GWGCWC	2 cut(s)	57, 177
BbvI	GCAGC	4 cut(s)	406, 416, 830, 935
BccI	CCATC	4 cut(s)	56, 277, 339, 968
BceAI	ACGGC	4 cut(s)	42, 96, 124, 280
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	3 cut(s)	70, 233, 483
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	641, 1059
BfaI	CTAG	2 cut(s)	402, 815
BfuAI	ACCTGC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	5 cut(s)	42, 420, 430, 819, 924
BlsI	GCNGC	5 cut(s)	43, 421, 431, 820, 925
Bme1390I	CCNGG	3 cut(s)	70, 233, 483
BmeT110I	CYCGRG	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	144, 977
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	3 cut(s)	70, 233, 483
BmsI	GCATC	1 cut(s)	859
BoxI	GACNNNNGTC	1 cut(s)	633
BpiI	GAAGAC	3 cut(s)	205, 521, 856
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	69, 130, 624
BsaXI	ACNNNNNCTCC	6 cut(s)	549, 579, 939, 942, 969, 972
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 232, 499
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	70, 233, 483
BseDI	CCNNGG	3 cut(s)	69, 130, 624
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	69, 232, 499
BseMII	CTCAG	1 cut(s)	733
BseRI	GAGGAG	2 cut(s)	629, 963
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	406, 416, 830, 935
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	942
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	6 cut(s)	44, 111, 146, 481, 561, 978
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	57, 177
BsiHKCI	CYCGRG	1 cut(s)	340
BsiWI	CGTACG	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	69, 232, 499
BsmAI	GTCTC	2 cut(s)	641, 1059
BsmBI	CGTCTC	1 cut(s)	1059
BsnI	GGCC	6 cut(s)	44, 111, 146, 481, 561, 978
BsoBI	CYCGRG	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	57, 177
Bsp143I	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	4 cut(s)	41, 267, 500, 644
BspANI	GGCC	6 cut(s)	44, 111, 146, 481, 561, 978
BspCNI	CTCAG	1 cut(s)	732
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	1 cut(s)	329
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	4 cut(s)	12, 322, 335, 543
BssECI	CCNNGG	3 cut(s)	69, 130, 624
BssMI	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	3 cut(s)	70, 233, 483
Bst4CI	ACNGT	2 cut(s)	698, 703
Bst6I	CTCTTC	1 cut(s)	1062
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstDEI	CTNAG	4 cut(s)	425, 719, 845, 1013
BstDSI	CCRYGG	1 cut(s)	624
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	8 cut(s)	7, 120, 221, 330, 465, 538, 844, 1075
BstMAI	GTCTC	2 cut(s)	641, 1059
BstMBI	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 264, 767, 878
BstNI	CCWGG	3 cut(s)	70, 233, 483
BstNSI	RCATGY	2 cut(s)	859, 1011
BstPAI	GACNNNNGTC	1 cut(s)	633
BstSCI	CCNGG	3 cut(s)	68, 231, 481
BstV1I	GCAGC	4 cut(s)	406, 416, 830, 935
BstV2I	GAAGAC	3 cut(s)	205, 521, 856
BstX2I	RGATCY	2 cut(s)	218, 327
BstYI	RGATCY	2 cut(s)	218, 327
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	6 cut(s)	44, 111, 146, 481, 561, 978
BtgI	CCRYGG	1 cut(s)	624
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	727
BveI	ACCTGC	1 cut(s)	538
CciI	TCATGA	1 cut(s)	825
CfoI	GCGC	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	144, 977
CseI	GACGC	2 cut(s)	18, 861
CsiI	ACCWGGT	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	114, 692, 699
CviAII	CATG	7 cut(s)	571, 592, 608, 625, 826, 856, 1008
CviQI	GTAC	3 cut(s)	114, 692, 699
DdeI	CTNAG	4 cut(s)	425, 719, 845, 1013
DpnI	GATC	8 cut(s)	6, 119, 220, 329, 464, 537, 843, 1074
DpnII	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
DraI	TTTAAA	2 cut(s)	885, 1027
DraIII	CACNNNGTG	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	2 cut(s)	42, 109
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	1062
EarI	CTCTTC	1 cut(s)	1062
Ecl136II	GAGCTC	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	624
Eco147I	AGGCCT	2 cut(s)	481, 561
Eco24I	GRGCYC	1 cut(s)	177
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	3 cut(s)	109, 199, 515
Eco88I	CYCGRG	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	68, 231, 481
EcoT14I	CCWWGG	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	624
Esp3I	CGTCTC	1 cut(s)	1059
FaeI	CATG	7 cut(s)	574, 595, 611, 628, 829, 859, 1011
FatI	CATG	7 cut(s)	570, 591, 607, 624, 825, 855, 1007
FauI	CCCGC	1 cut(s)	651
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	42, 420, 430, 819, 924
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	42, 420, 430, 819, 924
FspBI	CTAG	2 cut(s)	402, 815
FspI	TGCGCA	1 cut(s)	546
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	5 cut(s)	42, 420, 430, 819, 924
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	6 cut(s)	44, 111, 146, 481, 561, 978
HgaI	GACGC	2 cut(s)	18, 861
HhaI	GCGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	7 cut(s)	574, 595, 611, 628, 829, 859, 1011
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HinfI	GANTC	5 cut(s)	238, 338, 670, 680, 1048
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	103, 568, 694
Hpy188I	TCNGA	6 cut(s)	15, 37, 169, 218, 275, 307
Hpy188III	TCNNGA	8 cut(s)	200, 245, 335, 342, 437, 533, 826, 971
Hpy8I	GTNNAC	3 cut(s)	103, 568, 694
Hpy99I	CGWCG	4 cut(s)	34, 37, 212, 731
HpyAV	CCTTC	7 cut(s)	133, 443, 682, 770, 774, 906, 990
HpyCH4III	ACNGT	2 cut(s)	698, 703
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	5 cut(s)	294, 315, 761, 770, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 264, 767, 878
HpyF3I	CTNAG	4 cut(s)	425, 719, 845, 1013
HpySE526I	ACGT	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	7 cut(s)	574, 595, 611, 628, 829, 859, 1011
HspAI	GCGC	1 cut(s)	545
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
LmnI	GCTCC	1 cut(s)	950
Lsp1109I	GCAGC	4 cut(s)	406, 416, 830, 935
LweI	GCATC	1 cut(s)	859
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	2 cut(s)	402, 815
MaeII	ACGT	1 cut(s)	630
MalI	GATC	8 cut(s)	6, 119, 220, 329, 464, 537, 843, 1074
MboI	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
MboII	GAAGA	5 cut(s)	205, 521, 861, 1049, 1067
MflI	RGATCY	2 cut(s)	218, 327
MhlI	GDGCHC	2 cut(s)	57, 177
MluCI	AATT	6 cut(s)	155, 346, 575, 835, 932, 1038
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	15
MseI	TTAA	4 cut(s)	884, 1026, 1041, 1062
MslI	CAYNNNNRTG	2 cut(s)	623, 893
MspR9I	CCNGG	3 cut(s)	70, 233, 483
MvaI	CCWGG	3 cut(s)	70, 233, 483
MwoI	GCNNNNNNNGC	4 cut(s)	93, 264, 767, 878
NcoI	CCATGG	1 cut(s)	624
NdeII	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
NlaIII	CATG	7 cut(s)	574, 595, 611, 628, 829, 859, 1011
NlaIV	GGNNCC	1 cut(s)	329
NmeAIII	GCCGAG	3 cut(s)	63, 111, 691
NsbI	TGCGCA	1 cut(s)	546
NspI	RCATGY	2 cut(s)	859, 1011
PaeR7I	CTCGAG	1 cut(s)	340
PagI	TCATGA	1 cut(s)	825
PceI	AGGCCT	2 cut(s)	481, 561
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	238, 670, 680, 1048
Pfl23II	CGTACG	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	43, 421, 431, 820, 925
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PshAI	GACNNNNGTC	1 cut(s)	633
PsiI	TTATAA	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	68, 231, 481
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	3 cut(s)	68, 231, 481
PspLI	CGTACG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	2 cut(s)	144, 977
PsuI	RGATCY	2 cut(s)	218, 327
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	3 cut(s)	115, 693, 700
RsaNI	GTAC	3 cut(s)	114, 692, 699
RseI	CAYNNNNRTG	2 cut(s)	623, 893
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	884, 1026, 1041, 1062
SatI	GCNGC	5 cut(s)	42, 420, 430, 819, 924
Sau3AI	GATC	8 cut(s)	4, 117, 218, 327, 462, 535, 841, 1072
Sau96I	GGNCC	2 cut(s)	144, 977
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	70, 233, 483
SduI	GDGCHC	2 cut(s)	57, 177
SexAI	ACCWGGT	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	859
Sfr274I	CTCGAG	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	2 cut(s)	623, 893
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	6 cut(s)	155, 346, 575, 835, 932, 1038
SseBI	AGGCCT	2 cut(s)	481, 561
SsiI	CCGC	4 cut(s)	41, 267, 500, 644
SspMI	CTAG	2 cut(s)	402, 815
SstI	GAGCTC	1 cut(s)	177
StuI	AGGCCT	2 cut(s)	481, 561
StyD4I	CCNGG	3 cut(s)	68, 231, 481
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	698, 703
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	8 cut(s)	51, 336, 341, 495, 795, 910, 929, 1088
TasI	AATT	6 cut(s)	155, 346, 575, 835, 932, 1038
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	4 cut(s)	238, 670, 680, 1048
Tru1I	TTAA	4 cut(s)	884, 1026, 1041, 1062
Tru9I	TTAA	4 cut(s)	884, 1026, 1041, 1062
TscAI	CASTG	1 cut(s)	727
TseI	GCWGC	4 cut(s)	419, 429, 818, 923
TspDTI	ATGAA	2 cut(s)	764, 842
TspGWI	ACGGA	1 cut(s)	1041
TspRI	CASTG	1 cut(s)	727
Tth111I	GACNNNGTC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	67
XapI	RAATTY	3 cut(s)	346, 575, 932
XceI	RCATGY	2 cut(s)	859, 1011
XhoI	CTCGAG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	402, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.