Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Forward (+)

86741044 .. 86743822

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG647400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTAATCATCATCATGATCAGAATAGCGAAACGGCGTCGTCGGAGCCGGCGGCCATAGAGCACAGGGCCTACGCCAGGGTGGGTCTGCTCGGCAACCCCAGCGATGTCTACTACGGCCGTACGATCTCTTTCAGCCTCGGCAACTTCTGGGCCTCCGTCCGATTACACCCCTCCGATGACCTCGTCATCCAGCCCCACCCCACCCACGACCTCGTCGTCTTCAGATCTCTCCCCCACCTGGTGGATCGGCTAGACAATGAGGGTTATTATGGCGGTGTTCGATTACTGATGGCGATTTGCAAAGTGTTTTTTGATTATTGCAAGGAAAACGAGATCCACCTAGACTCGAGAAACTTCACTCTCTCATATGATACTAATATCCCTCGCCAGACTGGACTTTCGGGGTCTAGTGCCATTGTGTGTGCGGCCCTTAGCTGCCTTCTTGACTTCTACAAGGTTAGGCATTTGGTCAAAGTAGATGCCAGGCCTGGCATTGTCCTTGGCGCGGAGAAACAGCTCGGAATTGTTGCTGGTCTTCAAGATCGGGTTGCGCAGGTTTATGGAGGCCTTGTTTACATGGAATTTGATAAGGAACACATGGATACTTTGGGGCATGGCATTTACACACCCATGGATGTTTGTCTTCTGCCGCCTCTATATCTCATATATGCCGAGAATCCAAGCGATTCTGGGAAGGTACACAGTACAGTTCGCCAAAGGTGGCTCGATGGCGATGAGTTTATAATATCATCAATGAAAGAAGTAGCAGATATTGCACAAGAAGGAATGAAAGCCTTACTCGAAAAGGACTACACTAAACTCGCTGCTCTCATGAACTCTAATTTTGATATTAGAAGGTTTGGGATCTCTGCATCTCTGCATCTGACTAATGCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

300

Amino Acids

33.49

Weight (kDa)

5.84

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	112 - 190	5.7e-09	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	1 cut(s)	509
AciI	CCGC	5 cut(s)	53, 276, 428, 509, 653
AclWI	GGATC	3 cut(s)	255, 331, 875
AcoI	YGGCCR	2 cut(s)	54, 118
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	3 cut(s)	124, 702, 709
AfiI	CCNNNNNNNGG	4 cut(s)	78, 241, 244, 508
AgsI	TTSAA	1 cut(s)	542
AjnI	CCWGG	4 cut(s)	77, 240, 485, 490
AluBI	AGCT	2 cut(s)	438, 520
AluI	AGCT	2 cut(s)	438, 520
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	255, 331, 875
Ama87I	CYCGRG	1 cut(s)	349
AoxI	GGCC	7 cut(s)	54, 69, 118, 153, 429, 488, 568
ApeKI	GCWGC	2 cut(s)	438, 827
ApoI	RAATTY	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
AspLEI	GCGC	2 cut(s)	509, 556
AspS9I	GGNCC	3 cut(s)	69, 153, 430
AvaI	CYCGRG	1 cut(s)	349
BbsI	GAAGAC	3 cut(s)	214, 530, 638
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	425, 814
BccI	CCATC	2 cut(s)	286, 725
BceAI	ACGGC	3 cut(s)	51, 105, 133
BciT130I	CCWGG	4 cut(s)	79, 242, 487, 492
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	19
BfaI	CTAG	3 cut(s)	254, 344, 411
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	5 cut(s)	54, 429, 439, 653, 828
BlsI	GCNGC	5 cut(s)	55, 430, 440, 654, 829
Bme1390I	CCNGG	4 cut(s)	79, 242, 487, 492
BmeT110I	CYCGRG	1 cut(s)	349
BmgT120I	GGNCC	3 cut(s)	69, 153, 430
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	4 cut(s)	79, 242, 487, 492
BmsI	GCATC	3 cut(s)	472, 884, 892
BpiI	GAAGAC	3 cut(s)	214, 530, 638
Bpu10I	CCTNAGC	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	4 cut(s)	78, 139, 502, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 241, 244, 508
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	4 cut(s)	79, 242, 487, 492
BseDI	CCNNGG	4 cut(s)	78, 139, 502, 633
BseGI	GGATG	2 cut(s)	189, 643
BseLI	CCNNNNNNNGG	4 cut(s)	78, 241, 244, 508
BseNI	ACTGG	1 cut(s)	400
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	425, 814
BseYI	CCCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	7 cut(s)	56, 71, 120, 155, 431, 490, 570
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	50
BsiWI	CGTACG	1 cut(s)	122
BslI	CCNNNNNNNGG	4 cut(s)	78, 241, 244, 508
BsnI	GGCC	7 cut(s)	56, 71, 120, 155, 431, 490, 570
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	5 cut(s)	53, 276, 428, 509, 653
BspANI	GGCC	7 cut(s)	56, 71, 120, 155, 431, 490, 570
BspFNI	CGCG	1 cut(s)	509
BspHI	TCATGA	2 cut(s)	16, 834
BspLI	GGNNCC	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	3 cut(s)	255, 331, 875
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	78, 139, 502, 633
BssMI	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	502, 633
Bst2UI	CCWGG	4 cut(s)	79, 242, 487, 492
Bst4CI	ACNGT	2 cut(s)	707, 712
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	434
BstDSI	CCRYGG	1 cut(s)	633
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	189, 643
BstFNI	CGCG	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	509, 556
BstKTI	GATC	7 cut(s)	22, 129, 230, 250, 339, 547, 870
BstMBI	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 776
BstNI	CCWGG	4 cut(s)	79, 242, 487, 492
BstSCI	CCNGG	4 cut(s)	77, 240, 485, 490
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	425, 814
BstV2I	GAAGAC	3 cut(s)	214, 530, 638
BstX2I	RGATCY	3 cut(s)	227, 336, 867
BstYI	RGATCY	3 cut(s)	227, 336, 867
BstZI	CGGCCG	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	7 cut(s)	56, 71, 120, 155, 431, 490, 570
BtgI	CCRYGG	1 cut(s)	633
BtgZI	GCGATG	2 cut(s)	120, 750
BtsCI	GGATG	2 cut(s)	189, 643
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	51
CciI	TCATGA	2 cut(s)	16, 834
CfoI	GCGC	2 cut(s)	509, 556
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	69, 153, 430
CseI	GACGC	1 cut(s)	27
CsiI	ACCWGGT	1 cut(s)	240
Csp6I	GTAC	3 cut(s)	123, 701, 708
CviAII	CATG	6 cut(s)	17, 580, 601, 617, 634, 835
CviQI	GTAC	3 cut(s)	123, 701, 708
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	7 cut(s)	21, 128, 229, 249, 338, 546, 869
DpnII	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
DraIII	CACNNNGTG	1 cut(s)	244
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	54, 118
EagI	CGGCCG	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	502, 633
Eco147I	AGGCCT	2 cut(s)	490, 570
Eco52I	CGGCCG	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	349
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	4 cut(s)	77, 240, 485, 490
EcoT14I	CCWWGG	2 cut(s)	502, 633
ErhI	CCWWGG	2 cut(s)	502, 633
FaeI	CATG	6 cut(s)	20, 583, 604, 620, 637, 838
FatI	CATG	6 cut(s)	16, 579, 600, 616, 633, 834
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	5 cut(s)	54, 429, 439, 653, 828
FokI	GGATG	2 cut(s)	176, 650
Fsp4HI	GCNGC	5 cut(s)	54, 429, 439, 653, 828
FspBI	CTAG	3 cut(s)	254, 344, 411
FspI	TGCGCA	1 cut(s)	555
GlaI	GCGC	2 cut(s)	508, 555
GluI	GCNGC	5 cut(s)	54, 429, 439, 653, 828
GsaI	CCCAGC	1 cut(s)	105
HaeIII	GGCC	7 cut(s)	56, 71, 120, 155, 431, 490, 570
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	2 cut(s)	509, 556
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	6 cut(s)	20, 583, 604, 620, 637, 838
Hin6I	GCGC	2 cut(s)	507, 554
HinP1I	GCGC	2 cut(s)	507, 554
HinfI	GANTC	3 cut(s)	347, 679, 689
HpaII	CCGG	1 cut(s)	50
Hpy166II	GTNNAC	3 cut(s)	112, 577, 703
Hpy188I	TCNGA	7 cut(s)	24, 46, 164, 178, 227, 524, 888
Hpy188III	TCNNGA	5 cut(s)	17, 351, 446, 542, 835
Hpy8I	GTNNAC	3 cut(s)	112, 577, 703
Hpy99I	CGWCG	3 cut(s)	43, 46, 221
HpyAV	CCTTC	4 cut(s)	452, 691, 779, 852
HpyCH4III	ACNGT	2 cut(s)	707, 712
HpyCH4V	TGCA	5 cut(s)	303, 324, 779, 875, 883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 776
HpyF3I	CTNAG	1 cut(s)	434
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	6 cut(s)	20, 583, 604, 620, 637, 838
HspAI	GCGC	2 cut(s)	507, 554
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	425, 814
LweI	GCATC	3 cut(s)	472, 884, 892
MabI	ACCWGGT	1 cut(s)	240
MaeI	CTAG	3 cut(s)	254, 344, 411
MalI	GATC	7 cut(s)	21, 128, 229, 249, 338, 546, 869
MboI	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
MboII	GAAGA	3 cut(s)	214, 530, 638
MflI	RGATCY	3 cut(s)	227, 336, 867
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	3 cut(s)	525, 584, 844
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	9 cut(s)	149, 166, 184, 194, 224, 256, 396, 560, 666
MroNI	GCCGGC	1 cut(s)	49
MslI	CAYNNNNRTG	2 cut(s)	15, 632
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	4 cut(s)	79, 242, 487, 492
MvaI	CCWGG	4 cut(s)	79, 242, 487, 492
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	102, 776
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	633
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	6 cut(s)	20, 583, 604, 620, 637, 838
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	3 cut(s)	72, 120, 700
NsbI	TGCGCA	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	349
PagI	TCATGA	2 cut(s)	16, 834
PceI	AGGCCT	2 cut(s)	490, 570
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	679, 689
Pfl23II	CGTACG	1 cut(s)	122
PflFI	GACNNNGTC	2 cut(s)	185, 215
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	5 cut(s)	55, 430, 440, 654, 829
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PsiI	TTATAA	1 cut(s)	746
Psp6I	CCWGG	4 cut(s)	77, 240, 485, 490
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	4 cut(s)	77, 240, 485, 490
PspLI	CGTACG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	3 cut(s)	69, 153, 430
PsuI	RGATCY	3 cut(s)	227, 336, 867
PsyI	GACNNNGTC	2 cut(s)	185, 215
RsaI	GTAC	3 cut(s)	124, 702, 709
RsaNI	GTAC	3 cut(s)	123, 701, 708
RseI	CAYNNNNRTG	2 cut(s)	15, 632
SatI	GCNGC	5 cut(s)	54, 429, 439, 653, 828
Sau3AI	GATC	7 cut(s)	19, 126, 227, 247, 336, 544, 867
Sau96I	GGNCC	3 cut(s)	69, 153, 430
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	4 cut(s)	79, 242, 487, 492
SduI	GDGCHC	1 cut(s)	66
SexAI	ACCWGGT	1 cut(s)	240
SfaNI	GCATC	3 cut(s)	472, 884, 892
Sfr274I	CTCGAG	1 cut(s)	349
SlaI	CTCGAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	15, 632
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	3 cut(s)	525, 584, 844
SseBI	AGGCCT	2 cut(s)	490, 570
SsiI	CCGC	5 cut(s)	53, 276, 428, 509, 653
SspMI	CTAG	3 cut(s)	254, 344, 411
StuI	AGGCCT	2 cut(s)	490, 570
StyD4I	CCNGG	4 cut(s)	77, 240, 485, 490
StyI	CCWWGG	2 cut(s)	502, 633
TaaI	ACNGT	2 cut(s)	707, 712
TaqI	TCGA	4 cut(s)	283, 350, 729, 804
TasI	AATT	3 cut(s)	525, 584, 844
TatI	WGTACW	1 cut(s)	707
TauI	GCSGC	3 cut(s)	56, 431, 655
TfiI	GAWTC	2 cut(s)	679, 689
TseI	GCWGC	2 cut(s)	438, 827
TspDTI	ATGAA	3 cut(s)	773, 806, 851
TspGWI	ACGGA	1 cut(s)	148
Tth111I	GACNNNGTC	2 cut(s)	185, 215
Van91I	CCANNNNNTGG	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	584
XhoI	CTCGAG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	3 cut(s)	254, 344, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.