Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1369230 .. 1371518

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1023000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGGACCACCAGACAACGACGTCATCGTCGGAAGCGGCGGTGATCCAACACAGGGCGTACGCCAGGGTGGGGCTGCTCGGTAACCCGAGCGACGTGTACTACGGCCGCACGATCTCCTTCAGCGTCGGAAACTTCTGGGCCACCGTAAGGTTGCAACCGTCCGATGATCTCGTCATCCAGCCCCACCCCACCCACGACCTCGTCGTCTTCCGATCCCTCGATCACCTGGTGAATCGGTTGGATAGTGAGGGATATTATGGTGGTGTTCGATTGCTGATGGCGATTTGCAAAGTGTTCTTCGATTATTGCAAGGAAAATGCGATCGAATTGGAAGCTCGAAATTTCACTCTCTCGTATGATACTAATATCCCTCGCCAGACAGGACTTTCGGGGTCTAGTGCGATTGTGTGTGCAGCCCTGAGCTGCCTTCTTGACTTCCACAAGGTTAGGCACTTGATTAAAGTGGAGGTCCGCCCCGGCCTCGTCCTCAATGCCGAGAAGCAACTAGGCATTGTTGCCGGTCTTCAAGATCGCGTGGCGCAAGTTTATGGCGGCCTTGTTGACATGGAATTTGCCAAGGAACACATGGATACTCTGGGGCATGGAATTTACACACCCATGGATGTTAGTCTTCTCCCGCCTCTTCACCTCATCTATGCCGAGAATCCAAGTGATTCTGGGAAGGTGCATAGTACCGTTCGTCAAAGGTGGCTCAGCGGTGATGAGTTTATAATATCATCAATGACAGAAGTTGCAAATATTGCACTAGAAGGAAGGACGGCCTTACTTGAAAGGGACTACACTAAATTAGCTTCTCTGATGAACAGAAATTTTGACCTTAGAAGAAGCATGTTTGGAGACGATGCTCTGGGTGCTTTAAACATAGAAATGGTGGAGGTAGCCCGAAGGGTGGGTGCAGCGTCCAAATTCACAGGTAGCGGAGGGGCAGTCGTTGTGTTTTGTCCTGATGGTCCTACACAAGTGAAGCTCTTGGAGGACGAGTGTCAAAAGGCTGGCTTTAAACTCGAACAGATAGAAGTCATTCCCTCTCTTCTAAACAAGGTTGATCTACAAACCTTATCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

364

Amino Acids

40.09

Weight (kDa)

5.68

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	108 - 186	3.6e-09	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	3 cut(s)	22, 28, 206
AatII	GACGTC	1 cut(s)	26
AccII	CGCG	1 cut(s)	537
AciI	CCGC	8 cut(s)	38, 41, 109, 475, 555, 641, 720, 942
AclWI	GGATC	2 cut(s)	40, 210
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
AcuI	CTGAAG	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	3 cut(s)	62, 101, 697
AfiI	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	530, 794
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	65, 228
AluBI	AGCT	4 cut(s)	338, 426, 815, 991
AluI	AGCT	4 cut(s)	338, 426, 815, 991
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	2 cut(s)	40, 210
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	5 cut(s)	106, 141, 481, 556, 783
ApeKI	GCWGC	4 cut(s)	76, 416, 426, 920
ApoI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
ArsI	GACNNNNNNTTYG	4 cut(s)	373, 405, 557, 589
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	4 cut(s)	7, 141, 472, 974
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	5 cut(s)	55, 218, 244, 641, 734
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	3 cut(s)	7, 472, 974
BbsI	GAAGAC	3 cut(s)	202, 518, 626
BbvI	GCAGC	4 cut(s)	63, 413, 428, 932
BccI	CCATC	2 cut(s)	274, 965
BceAI	ACGGC	2 cut(s)	121, 798
BciT130I	CCWGG	2 cut(s)	67, 230
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	3 cut(s)	399, 509, 770
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	7 cut(s)	39, 77, 109, 417, 427, 556, 921
BlpI	GCTNAGC	1 cut(s)	716
BlsI	GCNGC	7 cut(s)	40, 78, 110, 418, 428, 557, 922
Bme1390I	CCNGG	3 cut(s)	67, 230, 480
Bme18I	GGWCC	3 cut(s)	7, 472, 974
BmeT110I	CYCGRG	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	4 cut(s)	7, 141, 472, 974
BmrFI	CCNGG	3 cut(s)	67, 230, 480
BmsI	GCATC	1 cut(s)	856
BoxI	GACNNNNGTC	1 cut(s)	1005
BpiI	GAAGAC	3 cut(s)	202, 518, 626
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu1102I	GCTNAGC	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	66, 478, 579, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	936, 966, 989, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
Bse118I	RCCGGY	1 cut(s)	521
BseBI	CCWGG	2 cut(s)	67, 230
BseDI	CCNNGG	4 cut(s)	66, 478, 579, 621
BseGI	GGATG	2 cut(s)	177, 631
BseLI	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
BseMII	CTCAG	2 cut(s)	413, 730
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	63, 413, 428, 932
BsgI	GTGCAG	2 cut(s)	435, 939
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	2 cut(s)	109, 327
BshFI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BsiEI	CGRYCG	2 cut(s)	109, 327
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	480, 522
BsiWI	CGTACG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	4 cut(s)	55, 72, 150, 913
BsmAI	GTCTC	1 cut(s)	855
BsmBI	CGTCTC	1 cut(s)	855
BsmFI	GGGAC	1 cut(s)	812
BsnI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BsoBI	CYCGRG	1 cut(s)	88
Bsp143I	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
Bsp1720I	GCTNAGC	1 cut(s)	716
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	8 cut(s)	38, 41, 109, 475, 555, 641, 720, 942
BspANI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BspCNI	CTCAG	2 cut(s)	414, 729
BspFNI	CGCG	1 cut(s)	537
BspPI	GGATC	2 cut(s)	40, 210
BsrFI	RCCGGY	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	66, 478, 579, 621
BssMI	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	579, 621
Bst2UI	CCWGG	2 cut(s)	67, 230
Bst4CI	ACNGT	3 cut(s)	148, 162, 700
Bst6I	CTCTTC	2 cut(s)	651, 1059
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	1 cut(s)	1018
BstDEI	CTNAG	3 cut(s)	422, 716, 842
BstDSI	CCRYGG	1 cut(s)	621
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	177, 631
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	8 cut(s)	48, 117, 172, 218, 226, 327, 535, 1072
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
BstMCI	CGRYCG	2 cut(s)	109, 327
BstMWI	GCNNNNNNNGC	2 cut(s)	764, 875
BstNI	CCWGG	2 cut(s)	67, 230
BstNSI	RCATGY	1 cut(s)	856
BstPAI	GACNNNNGTC	1 cut(s)	1005
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	3 cut(s)	65, 228, 478
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	4 cut(s)	63, 413, 428, 932
BstV2I	GAAGAC	3 cut(s)	202, 518, 626
BstZI	CGGCCG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	5 cut(s)	108, 143, 483, 558, 785
BtgI	CCRYGG	1 cut(s)	621
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	177, 631
Cac8I	GCNNGC	1 cut(s)	1018
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	4 cut(s)	7, 141, 472, 974
CseI	GACGC	2 cut(s)	115, 912
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	61, 100, 696
CviAII	CATG	5 cut(s)	568, 589, 605, 622, 853
CviQI	GTAC	3 cut(s)	61, 100, 696
DdeI	CTNAG	3 cut(s)	422, 716, 842
DpnI	GATC	8 cut(s)	47, 116, 171, 217, 225, 326, 534, 1071
DpnII	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
DraI	TTTAAA	2 cut(s)	882, 1024
DraIII	CACNNNGTG	1 cut(s)	232
DrdI	GACNNNNNNGTC	3 cut(s)	22, 28, 206
DseDI	GACNNNNNNGTC	3 cut(s)	22, 28, 206
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	651, 1059
EarI	CTCTTC	2 cut(s)	651, 1059
EciI	GGCGGA	1 cut(s)	464
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	579, 621
Eco47I	GGWCC	3 cut(s)	7, 472, 974
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	65, 228
EcoT14I	CCWWGG	2 cut(s)	579, 621
ErhI	CCWWGG	2 cut(s)	579, 621
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	5 cut(s)	571, 592, 608, 625, 856
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	5 cut(s)	567, 588, 604, 621, 852
FauI	CCCGC	1 cut(s)	648
Fnu4HI	GCNGC	7 cut(s)	39, 77, 109, 417, 427, 556, 921
FokI	GGATG	2 cut(s)	164, 638
Fsp4HI	GCNGC	7 cut(s)	39, 77, 109, 417, 427, 556, 921
FspBI	CTAG	3 cut(s)	399, 509, 770
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	7 cut(s)	39, 77, 109, 417, 427, 556, 921
HaeIII	GGCC	5 cut(s)	108, 143, 483, 558, 785
HapII	CCGG	2 cut(s)	480, 522
HgaI	GACGC	2 cut(s)	115, 912
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	571, 592, 608, 625, 856
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	3 cut(s)	235, 667, 677
HpaII	CCGG	2 cut(s)	480, 522
HphI	GGTGA	5 cut(s)	55, 218, 244, 641, 734
Hpy166II	GTNNAC	2 cut(s)	100, 565
Hpy188I	TCNGA	5 cut(s)	34, 131, 166, 215, 822
Hpy188III	TCNNGA	3 cut(s)	434, 530, 968
Hpy8I	GTNNAC	2 cut(s)	100, 565
Hpy99I	CGWCG	5 cut(s)	25, 34, 98, 131, 209
HpyAV	CCTTC	6 cut(s)	130, 440, 679, 767, 771, 903
HpyCH4III	ACNGT	3 cut(s)	148, 162, 700
HpyCH4IV	ACGT	2 cut(s)	23, 96
HpyCH4V	TGCA	8 cut(s)	157, 291, 312, 416, 691, 758, 767, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	764, 875
HpyF3I	CTNAG	3 cut(s)	422, 716, 842
HpySE526I	ACGT	2 cut(s)	23, 96
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	571, 592, 608, 625, 856
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
Lsp1109I	GCAGC	4 cut(s)	63, 413, 428, 932
LweI	GCATC	1 cut(s)	856
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	3 cut(s)	399, 509, 770
MaeII	ACGT	2 cut(s)	23, 96
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	8 cut(s)	47, 116, 171, 217, 225, 326, 534, 1071
MboI	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
MboII	GAAGA	7 cut(s)	202, 292, 518, 626, 638, 858, 1046
MluCI	AATT	7 cut(s)	329, 343, 572, 609, 809, 832, 929
MmeI	TCCRAC	4 cut(s)	12, 73, 109, 222
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	3 cut(s)	462, 881, 1023
MslI	CAYNNNNRTG	2 cut(s)	620, 890
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	2 cut(s)	480, 522
MspR9I	CCNGG	3 cut(s)	67, 230, 480
MvaI	CCWGG	2 cut(s)	67, 230
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	764, 875
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
NlaIII	CATG	5 cut(s)	571, 592, 608, 625, 856
NmeAIII	GCCGAG	2 cut(s)	523, 688
NspI	RCATGY	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 204
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	3 cut(s)	235, 667, 677
Pfl23II	CGTACG	1 cut(s)	60
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	7 cut(s)	40, 78, 110, 418, 428, 557, 922
Ple19I	CGATCG	1 cut(s)	327
PshAI	GACNNNNGTC	1 cut(s)	1005
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	2 cut(s)	65, 228
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	2 cut(s)	65, 228
PspLI	CGTACG	1 cut(s)	60
PspPI	GGNCC	4 cut(s)	7, 141, 472, 974
PsyI	GACNNNGTC	1 cut(s)	203
PvuI	CGATCG	1 cut(s)	327
RsaI	GTAC	3 cut(s)	62, 101, 697
RsaNI	GTAC	3 cut(s)	61, 100, 696
RseI	CAYNNNNRTG	2 cut(s)	620, 890
SaqAI	TTAA	3 cut(s)	462, 881, 1023
SatI	GCNGC	7 cut(s)	39, 77, 109, 417, 427, 556, 921
Sau3AI	GATC	8 cut(s)	45, 114, 169, 215, 223, 324, 532, 1069
Sau96I	GGNCC	4 cut(s)	7, 141, 472, 974
ScrFI	CCNGG	3 cut(s)	67, 230, 480
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	856
SinI	GGWCC	3 cut(s)	7, 472, 974
SmiMI	CAYNNNNRTG	2 cut(s)	620, 890
Sse9I	AATT	7 cut(s)	329, 343, 572, 609, 809, 832, 929
SsiI	CCGC	8 cut(s)	38, 41, 109, 475, 555, 641, 720, 942
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	3 cut(s)	399, 509, 770
StyD4I	CCNGG	3 cut(s)	65, 228, 478
StyI	CCWWGG	2 cut(s)	579, 621
TaaI	ACNGT	3 cut(s)	148, 162, 700
TaiI	ACGT	2 cut(s)	26, 99
TaqI	TCGA	6 cut(s)	222, 271, 303, 327, 340, 1029
TasI	AATT	7 cut(s)	329, 343, 572, 609, 809, 832, 929
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	3 cut(s)	41, 111, 558
TfiI	GAWTC	3 cut(s)	235, 667, 677
Tru1I	TTAA	3 cut(s)	462, 881, 1023
Tru9I	TTAA	3 cut(s)	462, 881, 1023
TseI	GCWGC	4 cut(s)	76, 416, 426, 920
TspDTI	ATGAA	1 cut(s)	839
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	7, 472, 974
XapI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	3 cut(s)	399, 509, 770
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.