Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1209302 .. 1211053

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01930.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACGACCACCACAAAACGACGTCGTCGTCGGAAGCGGCGGTGATTGAGCACAGGGCGTACGCGAGGGTGGGCCTGCTGGGGAACCCGAGCGACGTCTACTACGGCCGCACGATCTCCTTCACCGCCGGTAACTTCTGGGCCACCGTGCGGTTGCAGCCGTCCGATGATCTCGTCATCCAGCCCCACCCCACCCACGACAACGTCGTCTTCCGATCCCTCCATCACCTGGTGAATCGGTTAGATAGTGAGGGATATTATGGAGGTGTTCGATTGCTGATGGCGATTTGCAAAGTGTTCTTTGATTATTGCAAGGAAAATGCGATTGAATTGGAAGCTCGAAATTTCACCCTCTCGTATGATACGAATATCCCTCGCCAGGCAGGACTTTCGGGGTCTAGTGCGATTGTGTGTGCAGCCCTGAGCTGCCTTCTTGACTTCCACAAGGTTAGGCATTTAATCAAAGTGGAGGTCCGCCCCGGCCTCGTCCTCAATGCCGAGAAGCAACTTGGAATTGTTGCCGGTCTTCAAGATCGCGTGGCGCAGGTTTATGGCGGCCTTGTTTACATGGAATTTGCCAAGGAAGACATGGATACATTGGGGCATGGAATTTACACACCCATGGATGTTAGTCTTCTTCCGCCTCTTCATCTCATCTATGCCGAGAATCCAAGCGATTCTGGGAAGGTACATAGTACAGTTCGTCAAAGGTGGCTCAACGGTGATGAGTTTATAATATCATCAATGACAGAAGTTGCAGATATTGCACTAGAAGGAAGGATGGCTTTAGTTGAAAAGGACTACGCTAAATTAGCTTCTCTCATGAACAGAAATTTTGACCTTAGAAGAAGCATGTTCGGAGACGATGCTCTAGGTGCTTTAAACATAGAAATGGTGGAGGTGGCCCGAAGGGTGGGTGCAGCATCCAAATTCACAGGCAGCGGAGGGGCAGTCGTCGTGTTTTGCCCCGATGGTCCTTTACAAGTGAAGCACTTGGAGGATGAGTGTCGAAAGGCTGGCTTTAAACTTGAACAGATAGAAGTCATTCCCTCTCTTCTAAACGAGGTTGACCTACAAACCTTGTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

364

Amino Acids

40.17

Weight (kDa)

5.72

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	2 cut(s)	28, 206
AatII	GACGTC	2 cut(s)	26, 99
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	65, 537
AciI	CCGC	9 cut(s)	38, 41, 109, 126, 151, 475, 555, 641, 942
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
AcyI	GRCGYC	2 cut(s)	23, 96
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	3 cut(s)	62, 690, 697
AfiI	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
AgsI	TTSAA	4 cut(s)	329, 530, 794, 1031
AjnI	CCWGG	2 cut(s)	228, 378
AluBI	AGCT	3 cut(s)	338, 426, 815
AluI	AGCT	3 cut(s)	338, 426, 815
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	6 cut(s)	73, 106, 141, 481, 556, 903
ApeKI	GCWGC	5 cut(s)	157, 416, 426, 920, 939
ApoI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	6 cut(s)	55, 115, 218, 244, 340, 734
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	472, 974
BbsI	GAAGAC	4 cut(s)	202, 518, 591, 626
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	169, 413, 428, 932, 951
BccI	CCATC	4 cut(s)	231, 274, 775, 965
BceAI	ACGGC	2 cut(s)	121, 145
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciT130I	CCWGG	2 cut(s)	230, 380
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	3 cut(s)	399, 770, 872
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
BlsI	GCNGC	8 cut(s)	40, 110, 159, 418, 428, 557, 922, 941
Bme1390I	CCNGG	3 cut(s)	230, 380, 480
Bme18I	GGWCC	2 cut(s)	472, 974
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	3 cut(s)	230, 380, 480
BmsI	GCATC	2 cut(s)	856, 932
BpiI	GAAGAC	4 cut(s)	202, 518, 591, 626
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	23, 96
BsaJI	CCNNGG	3 cut(s)	478, 579, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	936, 966, 989, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
Bse118I	RCCGGY	2 cut(s)	128, 521
BseBI	CCWGG	2 cut(s)	230, 380
BseDI	CCNNGG	3 cut(s)	478, 579, 621
BseGI	GGATG	5 cut(s)	177, 631, 786, 923, 1006
BseLI	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
BseMII	CTCAG	1 cut(s)	413
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	5 cut(s)	169, 413, 428, 932, 951
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	435, 939
Bsh1236I	CGCG	2 cut(s)	65, 537
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	129, 480, 522
BsiWI	CGTACG	1 cut(s)	60
BslI	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
BsmAI	GTCTC	1 cut(s)	855
BsmBI	CGTCTC	1 cut(s)	855
BsnI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	114, 169, 215, 532
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	9 cut(s)	38, 41, 109, 126, 151, 475, 555, 641, 942
BspANI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	2 cut(s)	65, 537
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	86
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	128, 521
BssAI	RCCGGY	2 cut(s)	128, 521
BssECI	CCNNGG	3 cut(s)	478, 579, 621
BssMI	GATC	4 cut(s)	114, 169, 215, 532
BssNI	GRCGYC	2 cut(s)	23, 96
BssT1I	CCWWGG	2 cut(s)	579, 621
Bst2UI	CCWGG	2 cut(s)	230, 380
Bst4CI	ACNGT	3 cut(s)	148, 700, 722
Bst6I	CTCTTC	2 cut(s)	651, 1059
BstACI	GRCGYC	2 cut(s)	23, 96
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	77, 1018
BstDEI	CTNAG	2 cut(s)	422, 842
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	5 cut(s)	177, 631, 786, 923, 1006
BstFNI	CGCG	2 cut(s)	65, 537
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	4 cut(s)	117, 172, 218, 535
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	4 cut(s)	114, 169, 215, 532
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 764, 812, 875
BstNI	CCWGG	2 cut(s)	230, 380
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	228, 378, 478
BstUI	CGCG	2 cut(s)	65, 537
BstV1I	GCAGC	5 cut(s)	169, 413, 428, 932, 951
BstV2I	GAAGAC	4 cut(s)	202, 518, 591, 626
BstZI	CGGCCG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	5 cut(s)	177, 631, 786, 923, 1006
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	77, 1018
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	2 cut(s)	128, 521
Cfr13I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	61, 689, 696
CviAII	CATG	6 cut(s)	568, 589, 605, 622, 823, 853
CviQI	GTAC	3 cut(s)	61, 689, 696
DdeI	CTNAG	2 cut(s)	422, 842
DpnI	GATC	4 cut(s)	116, 171, 217, 534
DpnII	GATC	4 cut(s)	114, 169, 215, 532
DraI	TTTAAA	2 cut(s)	882, 1024
DraIII	CACNNNGTG	1 cut(s)	232
DrdI	GACNNNNNNGTC	2 cut(s)	28, 206
DseDI	GACNNNNNNGTC	2 cut(s)	28, 206
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	651, 1059
EarI	CTCTTC	2 cut(s)	651, 1059
EciI	GGCGGA	2 cut(s)	464, 630
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	579, 621
Eco47I	GGWCC	2 cut(s)	472, 974
Eco52I	CGGCCG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	228, 378
EcoT14I	CCWWGG	2 cut(s)	579, 621
ErhI	CCWWGG	2 cut(s)	579, 621
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
FalI	AAGNNNNNCTT	4 cut(s)	769, 801, 1004, 1036
FatI	CATG	6 cut(s)	567, 588, 604, 621, 822, 852
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
FokI	GGATG	5 cut(s)	164, 638, 793, 910, 1013
Fsp4HI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
FspBI	CTAG	3 cut(s)	399, 770, 872
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
HapII	CCGG	3 cut(s)	129, 480, 522
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	2 cut(s)	23, 96
Hin1II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HinfI	GANTC	3 cut(s)	235, 667, 677
HpaII	CCGG	3 cut(s)	129, 480, 522
HphI	GGTGA	6 cut(s)	55, 115, 218, 244, 340, 734
Hpy166II	GTNNAC	3 cut(s)	100, 565, 1069
Hpy188I	TCNGA	4 cut(s)	34, 166, 215, 860
Hpy188III	TCNNGA	3 cut(s)	434, 530, 823
Hpy8I	GTNNAC	3 cut(s)	100, 565, 1069
Hpy99I	CGWCG	7 cut(s)	25, 28, 31, 34, 98, 209, 959
HpyAV	CCTTC	6 cut(s)	130, 440, 679, 767, 771, 903
HpyCH4III	ACNGT	3 cut(s)	148, 700, 722
HpyCH4IV	ACGT	3 cut(s)	23, 96, 204
HpyCH4V	TGCA	7 cut(s)	157, 291, 312, 416, 758, 767, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 764, 812, 875
HpyF3I	CTNAG	2 cut(s)	422, 842
HpySE526I	ACGT	3 cut(s)	23, 96, 204
Hsp92I	GRCGYC	2 cut(s)	23, 96
Hsp92II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	4 cut(s)	114, 169, 215, 532
Lsp1109I	GCAGC	5 cut(s)	169, 413, 428, 932, 951
LweI	GCATC	2 cut(s)	856, 932
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	3 cut(s)	399, 770, 872
MaeII	ACGT	3 cut(s)	23, 96, 204
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	4 cut(s)	116, 171, 217, 534
MboI	GATC	4 cut(s)	114, 169, 215, 532
MboII	GAAGA	8 cut(s)	202, 518, 596, 626, 629, 638, 858, 1046
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
MmeI	TCCRAC	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	3 cut(s)	458, 881, 1023
MslI	CAYNNNNRTG	2 cut(s)	620, 890
MspA1I	CMGCKG	1 cut(s)	942
MspI	CCGG	3 cut(s)	129, 480, 522
MspR9I	CCNGG	3 cut(s)	230, 380, 480
MvaI	CCWGG	2 cut(s)	230, 380
MvnI	CGCG	2 cut(s)	65, 537
MwoI	GCNNNNNNNGC	4 cut(s)	157, 764, 812, 875
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	4 cut(s)	114, 169, 215, 532
NlaIII	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
NlaIV	GGNNCC	1 cut(s)	86
NmeAIII	GCCGAG	2 cut(s)	523, 688
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	3 cut(s)	26, 204, 362
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	3 cut(s)	235, 667, 677
Pfl23II	CGTACG	1 cut(s)	60
PflFI	GACNNNGTC	2 cut(s)	25, 203
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	8 cut(s)	40, 110, 159, 418, 428, 557, 922, 941
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	2 cut(s)	228, 378
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	228, 378
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	5 cut(s)	73, 141, 472, 904, 974
PsyI	GACNNNGTC	2 cut(s)	25, 203
RsaI	GTAC	3 cut(s)	62, 690, 697
RsaNI	GTAC	3 cut(s)	61, 689, 696
RseI	CAYNNNNRTG	2 cut(s)	620, 890
SaqAI	TTAA	3 cut(s)	458, 881, 1023
SatI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
Sau3AI	GATC	4 cut(s)	114, 169, 215, 532
Sau96I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
ScrFI	CCNGG	3 cut(s)	230, 380, 480
SduI	GDGCHC	1 cut(s)	54
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	856, 932
SinI	GGWCC	2 cut(s)	472, 974
SmiMI	CAYNNNNRTG	2 cut(s)	620, 890
Sse9I	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
SsiI	CCGC	9 cut(s)	38, 41, 109, 126, 151, 475, 555, 641, 942
SspMI	CTAG	3 cut(s)	399, 770, 872
StyD4I	CCNGG	3 cut(s)	228, 378, 478
StyI	CCWWGG	2 cut(s)	579, 621
TaaI	ACNGT	3 cut(s)	148, 700, 722
TaiI	ACGT	3 cut(s)	26, 99, 207
TaqI	TCGA	3 cut(s)	271, 340, 1009
TasI	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	3 cut(s)	41, 111, 558
TfiI	GAWTC	3 cut(s)	235, 667, 677
Tru1I	TTAA	3 cut(s)	458, 881, 1023
Tru9I	TTAA	3 cut(s)	458, 881, 1023
TseI	GCWGC	5 cut(s)	157, 416, 426, 920, 939
TspDTI	ATGAA	2 cut(s)	638, 839
Tth111I	GACNNNGTC	2 cut(s)	25, 203
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	472, 974
XapI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	3 cut(s)	399, 770, 872
ZraI	GACGTC	2 cut(s)	24, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.