Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004777

Physical Location & Seq

Genomic Coordinates Reverse (-)

332275 .. 333072

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAATACCAGACAGAATCGTGGGGATCATACAAGATGAGCAGCTTAGGATTCGGCGGTTTGGGGATGGTGGCTGACACTGGTCTGCTTCGTATAGAGTCCCTGGCTTCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATGTGCCACGCCGTGAAGGGTCTCTTCAGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTCGACCTCCACCCCTACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTCCTCGGCTGCTCCGGCTCCTCTTCTCCAGGGTCTCTCCCGGTCGTCTTCATCGGCGGTAAACTGGTTGGAGCTATGGACAGAGTCATGGCTTCTCACATAAACGGCTCTCTCGTTCCTCTTCTCAAAGACGCCGGCGCTCTCTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048444 GO:0048446 GO:0048448 GO:0048449 GO:0048451 GO:0048465 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

136

Amino Acids

14.2

Weight (kDa)

6.88

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	41 - 109	7.4e-12	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02000
fragaria_vesca	FvH4_4g23190 FvH4_6g53900
malus_domestica	MD06G1051500.v1.1 MD09G1007400.v1.1 MD13G1124000.v1.1 MD16G1124500.v1.1 MD17G1011300.v1.1
prunus_persica	Prupe.1G221000_v2.0.a1 Prupe.3G309600_v2.0.a1
pyrus_communis	pycom111g00570 pycom16g10640 pycom17g00600
rosa_chinensis	RchiOBHm_Chr2g0176061 RchiOBHm_Chr4g0429551
rosa_laevigata	RLG00000007062 RLG00000022377
rosa_multiflora	Rmu_sc0011610.1_g000004 Rmu_sc0012513.1_g000002 Rmu_sc0013305.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076800 Rroxscaffold_5G00371250
rosa_rugosa	Rorug02G0590100 Rorug04G0237000
rosa_samantha	Rh2AG668900 Rh2BG680500 Rh2CG643400 Rh2DG694200 Rh4DG295400
rosa_wichuraiana	Rw2G054860 Rw4G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	119
AciI	CCGC	5 cut(s)	57, 119, 198, 231, 315
AclWI	GGATC	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	115, 160
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	2 cut(s)	189, 390
AdeI	CACNNNGTG	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	102, 286
AluBI	AGCT	3 cut(s)	45, 211, 332
AluI	AGCT	3 cut(s)	45, 211, 332
Alw21I	GWGCWC	2 cut(s)	143, 213
Alw26I	GTCTC	3 cut(s)	176, 263, 297
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	42, 147, 267
AspLEI	GCGC	2 cut(s)	119, 398
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	213, 250
BauI	CACGAG	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	2 cut(s)	143, 213
BbvI	GCAGC	3 cut(s)	54, 134, 254
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	4 cut(s)	146, 185, 244, 379
BciT130I	CCWGG	2 cut(s)	104, 288
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	3 cut(s)	176, 263, 297
BfoI	RGCGCY	1 cut(s)	399
BisI	GCNGC	4 cut(s)	43, 148, 232, 268
BlsI	GCNGC	4 cut(s)	44, 149, 233, 269
Bme1390I	CCNGG	3 cut(s)	104, 288, 299
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	3 cut(s)	104, 288, 299
BoxI	GACNNNNGTC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	144
BsaHI	GRCGYC	2 cut(s)	189, 390
BsaI	GGTCTC	2 cut(s)	176, 297
BsaJI	CCNNGG	3 cut(s)	102, 262, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	85, 327
BseBI	CCWGG	2 cut(s)	104, 288
BseDI	CCNNGG	3 cut(s)	102, 262, 287
BseGI	GGATG	2 cut(s)	72, 237
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	85, 327
BseRI	GAGGAG	2 cut(s)	251, 268
BseXI	GCAGC	3 cut(s)	54, 134, 254
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	143, 213
BsiSI	CCGG	3 cut(s)	273, 299, 393
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	3 cut(s)	176, 263, 297
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	85
Bso31I	GGTCTC	2 cut(s)	176, 297
Bsp1286I	GDGCHC	3 cut(s)	143, 213, 250
Bsp143I	GATC	2 cut(s)	26, 126
BspACI	CCGC	5 cut(s)	57, 119, 198, 231, 315
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	34
BspTNI	GGTCTC	2 cut(s)	176, 297
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	85, 327
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	102, 262, 287
BssMI	GATC	2 cut(s)	26, 126
BssNI	GRCGYC	2 cut(s)	189, 390
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	104, 288
Bst6I	CTCTTC	3 cut(s)	179, 286, 384
BstACI	GRCGYC	2 cut(s)	189, 390
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	246, 394
BstDEI	CTNAG	2 cut(s)	46, 111
BstF5I	GGATG	2 cut(s)	72, 237
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	2 cut(s)	119, 398
BstKTI	GATC	2 cut(s)	29, 129
BstMAI	GTCTC	3 cut(s)	176, 263, 297
BstMBI	GATC	2 cut(s)	26, 126
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 153, 273
BstNI	CCWGG	2 cut(s)	104, 288
BstNSI	RCATGY	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	102, 286, 297
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	54, 134, 254
BstV2I	GAAGAC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	72, 237
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	246, 394
CfoI	GCGC	2 cut(s)	119, 398
Cfr10I	RCCGGY	1 cut(s)	392
CseI	GACGC	2 cut(s)	178, 398
CviAII	CATG	2 cut(s)	151, 346
DdeI	CTNAG	2 cut(s)	46, 111
DpnI	GATC	2 cut(s)	28, 128
DpnII	GATC	2 cut(s)	26, 126
DraIII	CACNNNGTG	1 cut(s)	163
Eam1104I	CTCTTC	3 cut(s)	179, 286, 384
EarI	CTCTTC	3 cut(s)	179, 286, 384
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	213, 250
Eco31I	GGTCTC	2 cut(s)	176, 297
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	115, 160
Eco72I	CACGTG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	102, 286
EcoT38I	GRGCYC	2 cut(s)	213, 250
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	2 cut(s)	154, 349
FaiI	YATR	6 cut(s)	31, 95, 152, 335, 347, 359
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	150, 345
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	43, 148, 232, 268
FokI	GGATG	2 cut(s)	79, 224
FriOI	GRGCYC	2 cut(s)	213, 250
Fsp4HI	GCNGC	4 cut(s)	43, 148, 232, 268
GlaI	GCGC	2 cut(s)	118, 397
GluI	GCNGC	4 cut(s)	43, 148, 232, 268
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	399
HapII	CCGG	3 cut(s)	273, 299, 393
HgaI	GACGC	2 cut(s)	178, 398
HhaI	GCGC	2 cut(s)	119, 398
Hin1I	GRCGYC	2 cut(s)	189, 390
Hin1II	CATG	2 cut(s)	154, 349
Hin6I	GCGC	2 cut(s)	117, 396
HinP1I	GCGC	2 cut(s)	117, 396
HinfI	GANTC	4 cut(s)	17, 51, 98, 342
HpaII	CCGG	3 cut(s)	273, 299, 393
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	205, 320
Hpy188I	TCNGA	3 cut(s)	112, 179, 410
Hpy8I	GTNNAC	2 cut(s)	205, 320
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	4, 150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 153, 273
HpyF3I	CTNAG	2 cut(s)	46, 111
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	2 cut(s)	189, 390
Hsp92II	CATG	2 cut(s)	154, 349
HspAI	GCGC	2 cut(s)	117, 396
KroI	GCCGGC	1 cut(s)	392
KroNI	GCCGGC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	26, 126
LmnI	GCTCC	3 cut(s)	275, 281, 329
Lsp1109I	GCAGC	3 cut(s)	54, 134, 254
MaeII	ACGT	1 cut(s)	143
MalI	GATC	2 cut(s)	28, 128
MboI	GATC	2 cut(s)	26, 126
MboII	GAAGA	5 cut(s)	121, 166, 273, 298, 371
MhlI	GDGCHC	3 cut(s)	143, 213, 250
MlyI	GAGTC	2 cut(s)	107, 351
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	173, 227, 260, 272, 289, 387
MreI	CGCCGGCG	1 cut(s)	392
MroNI	GCCGGC	1 cut(s)	392
MspI	CCGG	3 cut(s)	273, 299, 393
MspR9I	CCNGG	3 cut(s)	104, 288, 299
MvaI	CCWGG	2 cut(s)	104, 288
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	147, 153, 273
NaeI	GCCGGC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	2 cut(s)	26, 126
NgoMIV	GCCGGC	1 cut(s)	392
NlaIII	CATG	2 cut(s)	154, 349
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	243
NspI	RCATGY	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	17, 51
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	44, 149, 233, 269
PleI	GAGTC	2 cut(s)	106, 350
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	2 cut(s)	106, 350
Ppu21I	YACGTR	1 cut(s)	144
PshAI	GACNNNNGTC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	102, 286
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	102, 286
PspN4I	GGNNCC	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	213
SatI	GCNGC	4 cut(s)	43, 148, 232, 268
Sau3AI	GATC	2 cut(s)	26, 126
SchI	GAGTC	2 cut(s)	107, 351
ScrFI	CCNGG	3 cut(s)	104, 288, 299
SduI	GDGCHC	3 cut(s)	143, 213, 250
SetI	ASST	5 cut(s)	47, 146, 213, 219, 334
SgrAI	CRCCGGYG	1 cut(s)	392
SsiI	CCGC	5 cut(s)	57, 119, 198, 231, 315
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	102, 286, 297
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	17, 51
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	3 cut(s)	42, 147, 267
TspDTI	ATGAA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	85
Tth111I	GACNNNGTC	1 cut(s)	341
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.