RLG00000007062

glutaredoxin-C1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004777
Physical Location & Seq
Reverse (-)
13183813 .. 13184638
826 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007062

Sequence Viewer

Length: 324 bp
ATGACGGACCCTCTGGAGCGAGTTGGGAGGCTGGCGTCGAAAAGCGCTGTGGTGATATTCAGCGTGAGCAGCTGTTGCATGTGCCACGCCGTCAAGAGGCTCTTCTGCGGAATGGGGGTGAATCCGACGGTGTACGAGCTGGACCAAGACCCGAGAGGGAAGGAGATCGAGAGGGCTCTCATGAGGTTGCTCGGAAACTCGTCTGCGGTTCCGGTGGTGTTCATCGGCGGCAAGTTGATAGGTGCCATGGACCGAGTTATGGCTTCCCATATCAATGGGTCCCTGGTGCCACTTCTCAAGGAGGCTGGGGCACTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.5

Weight (kDa)

8.84

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 17 - 80 2.9e-16 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 286
AciI CCGC 3 cut(s) 108, 206, 228
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 134
AfeI AGCGCT 1 cut(s) 46
AfiI CCNNNNNNNGG 2 cut(s) 96, 259
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 2 cut(s) 72, 139
AluI AGCT 2 cut(s) 72, 139
Ama87I CYCGRG 1 cut(s) 151
Aor51HI AGCGCT 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 4 cut(s) 7, 142, 250, 279
AsuHPI GGTGA 2 cut(s) 64, 130
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 4 cut(s) 7, 142, 250, 279
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 2 cut(s) 242, 286
BanII GRGCYC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 284
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 2 cut(s) 70, 229
BlsI GCNGC 2 cut(s) 71, 230
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 4 cut(s) 7, 142, 250, 279
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 7, 142, 250, 279
BmiI GGNNCC 6 cut(s) 9, 210, 244, 280, 281, 288
BmrFI CCNGG 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 246, 282
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 259
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 246, 282
BseLI CCNNNNNNNGG 2 cut(s) 96, 259
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 81
BseYI CCCAGC 1 cut(s) 305
BshNI GGYRCC 2 cut(s) 242, 286
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 96, 259
BsmFI GGGAC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 178, 313
Bsp143I GATC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 3 cut(s) 108, 206, 228
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 6 cut(s) 9, 210, 244, 280, 281, 288
BspQI GCTCTTC 1 cut(s) 107
BspT107I GGYRCC 2 cut(s) 242, 286
BssECI CCNNGG 2 cut(s) 246, 282
BssMI GATC 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 69, 75
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 4 cut(s) 7, 142, 250, 279
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 79, 181, 247
CviJI RGCY 8 cut(s) 31, 72, 100, 139, 176, 263, 305, 319
CviKI_1 RGCY 8 cut(s) 31, 72, 100, 139, 176, 263, 305, 319
CviQI GTAC 1 cut(s) 133
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 4 cut(s) 7, 142, 250, 279
Eco47III AGCGCT 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 82, 184, 250
FaiI YATR 5 cut(s) 80, 182, 248, 260, 270
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 78, 180, 246
Fnu4HI GCNGC 2 cut(s) 70, 229
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 70, 229
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 70, 229
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 48
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 82, 184, 250
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 64, 130
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 126, 194, 323
Hpy188III TCNNGA 4 cut(s) 14, 94, 169, 181
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 2 cut(s) 40, 130
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 75
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 82, 184, 250
HspAI GCGC 1 cut(s) 45
KflI GGGWCCC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 165
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 17, 125, 225, 269, 291, 296, 301
Lsp1109I GCAGC 1 cut(s) 81
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 2 cut(s) 178, 313
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 7 cut(s) 21, 21, 90, 149, 165, 177, 295
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 69, 75
NcoI CCATGG 1 cut(s) 246
NdeII GATC 1 cut(s) 165
NlaIII CATG 3 cut(s) 82, 184, 250
NlaIV GGNNCC 6 cut(s) 9, 210, 244, 280, 281, 288
NspI RCATGY 1 cut(s) 82
PagI TCATGA 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 71, 230
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 6 cut(s) 9, 210, 244, 280, 281, 288
PspPI GGNCC 4 cut(s) 7, 142, 250, 279
PspPPI RGGWCCY 1 cut(s) 279
PvuII CAGCTG 1 cut(s) 72
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 107
SatI GCNGC 2 cut(s) 70, 229
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 4 cut(s) 7, 142, 250, 279
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 2 cut(s) 178, 313
SetI ASST 4 cut(s) 74, 141, 188, 244
SinI GGWCC 4 cut(s) 7, 142, 250, 279
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 3 cut(s) 108, 206, 228
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 38, 168
TaqII GACCGA 1 cut(s) 267
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 121
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 1 cut(s) 20
VpaK11BI GGWCC 4 cut(s) 7, 142, 250, 279
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.