Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004777

Physical Location & Seq

Genomic Coordinates Forward (+)

26932417 .. 26933425

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAGTACCAGACAGAATCATGGGGCTCCTATATGCCCACGAGAAGTAGCATGGGCGGCGACCCACTGGAGCGCATAGAGAGGATGGCCTCAGAGAACGCTGTGGTGATATTCAGCGTGAGCAGCTGCTGCATGTGCCATGCCATCAAGAGGCTGTTTTGTGGCATGGGCGTCAACCCAACTGTGTACGAGCTGGATGAAGACCCGAGAGGCAAGGACTTGGAGAGGGCCCTGATGAGGCTCTTGGGCACCTCCTCTGCTGTTCCTGTGGTCTTCATTGGTGGAAAGCTTGTGGGTGCTATGGACAGAGTCATGGCCTCTCACATCAATGGCACTCTGGTTCCTCTTCTCAAAGAGGCTGGGGCTCTCTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

126

Amino Acids

13.66

Weight (kDa)

6.08

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02000
fragaria_vesca	FvH4_4g23190 FvH4_6g53900
malus_domestica	MD06G1051500.v1.1 MD09G1007400.v1.1 MD13G1124000.v1.1 MD16G1124500.v1.1 MD17G1011300.v1.1
prunus_persica	Prupe.1G221000_v2.0.a1 Prupe.3G309600_v2.0.a1
pyrus_communis	pycom111g00570 pycom16g10640 pycom17g00600
rosa_chinensis	RchiOBHm_Chr2g0176061 RchiOBHm_Chr4g0429551
rosa_laevigata	RLG00000007062 RLG00000022377
rosa_multiflora	Rmu_sc0011610.1_g000004 Rmu_sc0012513.1_g000002 Rmu_sc0013305.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076800 Rroxscaffold_5G00371250
rosa_rugosa	Rorug02G0590100 Rorug04G0237000
rosa_samantha	Rh2AG668900 Rh2BG680500 Rh2CG643400 Rh2DG694200 Rh4DG295400
rosa_wichuraiana	Rw2G054860 Rw4G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	8, 188
AfiI	CCNNNNNNNGG	2 cut(s)	150, 237
AluBI	AGCT	3 cut(s)	126, 193, 289
AluI	AGCT	3 cut(s)	126, 193, 289
AlwNI	CAGNNNCTG	1 cut(s)	129
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	3 cut(s)	87, 228, 315
ApaI	GGGCCC	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	123, 126, 129
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	228, 229
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	205
BaeGI	GKGCMC	2 cut(s)	232, 251
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	3 cut(s)	29, 232, 367
BauI	CACGAG	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	207, 265
BbvI	GCAGC	3 cut(s)	113, 116, 135
BccI	CCATC	2 cut(s)	79, 152
BisI	GCNGC	4 cut(s)	58, 124, 127, 130
BlsI	GCNGC	4 cut(s)	59, 125, 128, 131
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	228, 229
BmiI	GGNNCC	4 cut(s)	28, 230, 250, 342
BpiI	GAAGAC	2 cut(s)	207, 265
BpmI	CTGGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 237
Bse1I	ACTGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	90, 202
BseLI	CCNNNNNNNGG	2 cut(s)	150, 237
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	2 cut(s)	232, 251
BseXI	GCAGC	3 cut(s)	113, 116, 135
BseYI	CCCAGC	1 cut(s)	359
BshFI	GGCC	3 cut(s)	89, 230, 317
BshNI	GGYRCC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	150, 237
BsnI	GGCC	3 cut(s)	89, 230, 317
BsoBI	CYCGRG	1 cut(s)	205
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	4 cut(s)	29, 232, 251, 367
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	3 cut(s)	89, 230, 317
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	4 cut(s)	28, 230, 250, 342
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	90, 202
BstHHI	GCGC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 123, 129, 135
BstNSI	RCATGY	1 cut(s)	136
BstSLI	GKGCMC	2 cut(s)	232, 251
BstV1I	GCAGC	3 cut(s)	113, 116, 135
BstV2I	GAAGAC	2 cut(s)	207, 265
BsuRI	GGCC	3 cut(s)	89, 230, 317
BtsCI	GGATG	2 cut(s)	90, 202
BtsIMutI	CAGTG	1 cut(s)	65
CaiI	CAGNNNCTG	1 cut(s)	129
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	228, 229
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	7, 187
CviAII	CATG	6 cut(s)	21, 52, 133, 140, 166, 313
CviQI	GTAC	2 cut(s)	7, 187
DdeI	CTNAG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco24I	GRGCYC	3 cut(s)	29, 232, 367
Eco88I	CYCGRG	1 cut(s)	205
EcoO109I	RGGNCCY	2 cut(s)	228, 229
EcoT38I	GRGCYC	3 cut(s)	29, 232, 367
FaeI	CATG	6 cut(s)	24, 55, 136, 143, 169, 316
FatI	CATG	6 cut(s)	20, 51, 132, 139, 165, 312
Fnu4HI	GCNGC	4 cut(s)	58, 124, 127, 130
FokI	GGATG	2 cut(s)	97, 209
FriOI	GRGCYC	3 cut(s)	29, 232, 367
Fsp4HI	GCNGC	4 cut(s)	58, 124, 127, 130
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	58, 124, 127, 130
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	89, 230, 317
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	24, 55, 136, 143, 169, 316
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	17, 309
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	175, 187
Hpy188I	TCNGA	2 cut(s)	94, 377
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	175, 187
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	4, 132
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 123, 129, 135
HpyF3I	CTNAG	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	24, 55, 136, 143, 169, 316
HspAI	GCGC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	32, 70
LpnPI	CCDG	8 cut(s)	23, 53, 179, 245, 279, 323, 345, 355
Lsp1109I	GCAGC	3 cut(s)	113, 116, 135
MboII	GAAGA	3 cut(s)	212, 265, 338
MhlI	GDGCHC	4 cut(s)	29, 232, 251, 367
MlyI	GAGTC	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	57, 123, 129, 135
NlaIII	CATG	6 cut(s)	24, 55, 136, 143, 169, 316
NlaIV	GGNNCC	4 cut(s)	28, 230, 250, 342
NspI	RCATGY	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	59, 125, 128, 131
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	4 cut(s)	28, 230, 250, 342
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	228, 229
PstNI	CAGNNNCTG	1 cut(s)	129
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	126
RsaI	GTAC	2 cut(s)	8, 188
RsaNI	GTAC	2 cut(s)	7, 187
RseI	CAYNNNNRTG	1 cut(s)	327
SatI	GCNGC	4 cut(s)	58, 124, 127, 130
Sau96I	GGNCC	2 cut(s)	228, 229
SchI	GAGTC	1 cut(s)	318
SduI	GDGCHC	4 cut(s)	29, 232, 251, 367
SetI	ASST	4 cut(s)	128, 195, 254, 291
SmiMI	CAYNNNNRTG	1 cut(s)	327
SsiI	CCGC	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	184
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	3 cut(s)	123, 126, 129
TspDTI	ATGAA	2 cut(s)	213, 265
TspRI	CASTG	1 cut(s)	72
Tth111I	GACNNNGTC	1 cut(s)	308
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.