Rroxscaffold_2G00076800

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004777
Physical Location & Seq
Reverse (-)
525554 .. 525850
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076800.1

Sequence Viewer

Length: 297 bp
ATGGCTTCGGAGAACGCGGTGGTGATATTCAGCATCAGCAGCTGTTGCATGTGTCACGCCATCAAGAGGCTCTTCTGCGGCATGGGGGTCAATCCAACGGTGTACGAGCTCGACGAGGATCCCAGAGGAGGCAAGGACTTGGAGAAGGCTCTGATGAGGATCTTGGGGACCTCCAACGCTGTGCCGGTGGTCTTTATCGGTGGGAAGCTCGTCGGAACCATGGACAGAGTCATGGCCTCGCACATTAATGGCTCACTCGTCCCTCTTCTCAAAGAGGCTGGGGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

98

Amino Acids

10.47

Weight (kDa)

6.7

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 7 - 71 4.3e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 17, 78
AclWI GGATC 3 cut(s) 113, 126, 167
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 66, 128
AluBI AGCT 3 cut(s) 42, 109, 208
AluI AGCT 3 cut(s) 42, 109, 208
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 3 cut(s) 113, 126, 167
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 39
AseI ATTAAT 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 168
BamHI GGATCC 1 cut(s) 118
BanII GRGCYC 2 cut(s) 111, 286
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 68
BisI GCNGC 2 cut(s) 40, 79
BlsI GCNGC 2 cut(s) 41, 80
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 3 cut(s) 120, 169, 217
BmsI GCATC 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 128
Bse118I RCCGGY 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 66, 128
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 181, 245
BslI CCNNNNNNNGG 2 cut(s) 66, 128
BsmFI GGGAC 2 cut(s) 181, 245
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 111, 286
Bsp143I GATC 2 cut(s) 118, 159
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 2 cut(s) 17, 78
BspANI GGCC 1 cut(s) 236
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 120, 169, 217
BspPI GGATC 3 cut(s) 113, 126, 167
BspQI GCTCTTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 118, 159
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 2 cut(s) 77, 270
BstAPI GCANNNNNTGC 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 121, 162
BstMBI GATC 2 cut(s) 118, 159
BstMWI GCNNNNNNNGC 2 cut(s) 39, 45
BstNSI RCATGY 1 cut(s) 52
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 118, 159
BstYI RGATCY 2 cut(s) 118, 159
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 103
CviAII CATG 4 cut(s) 49, 82, 220, 232
CviQI GTAC 1 cut(s) 103
DpnI GATC 2 cut(s) 120, 161
DpnII GATC 2 cut(s) 118, 159
Eam1104I CTCTTC 2 cut(s) 77, 270
EarI CTCTTC 2 cut(s) 77, 270
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 2 cut(s) 111, 286
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 2 cut(s) 111, 286
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 4 cut(s) 52, 85, 223, 235
FaiI YATR 4 cut(s) 50, 83, 221, 233
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 2 cut(s) 181, 245
FatI CATG 4 cut(s) 48, 81, 219, 231
Fnu4HI GCNGC 2 cut(s) 40, 79
FriOI GRGCYC 2 cut(s) 111, 286
Fsp4HI GCNGC 2 cut(s) 40, 79
GluI GCNGC 2 cut(s) 40, 79
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 185
Hin1II CATG 4 cut(s) 52, 85, 223, 235
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 4 cut(s) 10, 153, 215, 296
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 2 cut(s) 116, 215
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 45
Hsp92II CATG 4 cut(s) 52, 85, 223, 235
Kzo9I GATC 2 cut(s) 118, 159
LguI GCTCTTC 1 cut(s) 77
LpnPI CCDG 4 cut(s) 136, 198, 264, 274
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 120, 161
MboI GATC 2 cut(s) 118, 159
MboII GAAGA 2 cut(s) 64, 257
MflI RGATCY 2 cut(s) 118, 159
MhlI GDGCHC 2 cut(s) 111, 286
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 3 cut(s) 119, 193, 198
MnlI CCTC 9 cut(s) 60, 109, 119, 122, 150, 181, 247, 268, 273
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 39, 45
NcoI CCATGG 1 cut(s) 219
NdeII GATC 2 cut(s) 118, 159
NlaIII CATG 4 cut(s) 52, 85, 223, 235
NlaIV GGNNCC 3 cut(s) 120, 169, 217
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 41, 80
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 168
PshBI ATTAAT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 120, 169, 217
PspPI GGNCC 1 cut(s) 168
PspPPI RGGWCCY 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 2 cut(s) 118, 159
PsyI GACNNNGTC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 246
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 40, 79
Sau3AI GATC 2 cut(s) 118, 159
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 1 cut(s) 237
SduI GDGCHC 2 cut(s) 111, 286
SetI ASST 4 cut(s) 44, 111, 173, 210
SfaNI GCATC 1 cut(s) 42
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 246
SsiI CCGC 2 cut(s) 17, 78
SstI GAGCTC 1 cut(s) 111
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 111
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 168
VspI ATTAAT 1 cut(s) 246
XceI RCATGY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.