pycom16g10640

glutaredoxin-C1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004777
Physical Location & Seq
Reverse (-)
7292460 .. 7292816
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g10640.1

Sequence Viewer

Length: 357 bp
ATGGGGGTACTACGTGCCGGTGAGGATGAGCATGGGGGATCGATCCTGGAGCGGGTGGCAAGGCTGGCCTCGAAGAGCGCGGTGGTGATATTCAGCGTGAGCAGCTGCTGCATGTGCCATGCCGTCAAGAGGCTCTTCTGCGGGATGGGGGTGAACACAACGGTGTACGAGCTGGACCAGGACCCCAGAGGGAAGGAGATCGAGAGGGCACTCATGAGGTTGCTCGGCAACTCGTCGGCGGTTCCGGTGGTGTTCATTGGTGGCAAGCTTGTCGGCGCCATGGATAGAGTCATGGCGTCCCATATCAATGGGTCCCTGGTCCCACTTCTTAAGGAGGCTGGGGCCCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

119

Amino Acids

12.57

Weight (kDa)

8.45

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 28 - 91 1.4e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 52
AccII CGCG 1 cut(s) 80
AciI CCGC 4 cut(s) 52, 80, 141, 239
AclWI GGATC 2 cut(s) 37, 46
AcyI GRCGYC 2 cut(s) 276, 296
AfaI GTAC 2 cut(s) 9, 167
AfiI CCNNNNNNNGG 2 cut(s) 52, 129
AflII CTTAAG 1 cut(s) 329
AjnI CCWGG 3 cut(s) 45, 177, 315
AleI CACNNNNGTG 1 cut(s) 161
AluBI AGCT 3 cut(s) 105, 172, 268
AluI AGCT 3 cut(s) 105, 172, 268
AlwI GGATC 2 cut(s) 37, 46
AlwNI CAGNNNCTG 1 cut(s) 108
AoxI GGCC 2 cut(s) 66, 342
ApaI GGGCCC 1 cut(s) 346
ApeKI GCWGC 3 cut(s) 102, 105, 108
AspLEI GCGC 2 cut(s) 80, 278
AspS9I GGNCC 6 cut(s) 175, 181, 312, 319, 342, 343
AsuHPI GGTGA 3 cut(s) 32, 97, 163
AvaII GGWCC 4 cut(s) 175, 181, 312, 319
BaeGI GKGCMC 2 cut(s) 211, 346
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 92, 95, 114
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 3 cut(s) 47, 179, 317
BfoI RGCGCY 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 3 cut(s) 103, 106, 109
BlsI GCNGC 3 cut(s) 104, 107, 110
Bme1390I CCNGG 3 cut(s) 47, 179, 317
Bme18I GGWCC 4 cut(s) 175, 181, 312, 319
BmgT120I GGNCC 6 cut(s) 175, 181, 312, 319, 342, 343
BmiI GGNNCC 8 cut(s) 183, 243, 277, 313, 314, 321, 343, 344
BmrFI CCNGG 3 cut(s) 47, 179, 317
BpmI CTGGAG 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 14
BsaHI GRCGYC 2 cut(s) 276, 296
BsaJI CCNNGG 2 cut(s) 279, 315
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 129
Bse118I RCCGGY 1 cut(s) 17
BseBI CCWGG 3 cut(s) 47, 179, 317
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 279, 315
BseGI GGATG 2 cut(s) 31, 150
BseLI CCNNNNNNNGG 2 cut(s) 52, 129
BseSI GKGCMC 2 cut(s) 211, 346
BseXI GCAGC 3 cut(s) 92, 95, 114
BseYI CCCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 68, 344
BshNI GGYRCC 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 41
BsiSI CCGG 2 cut(s) 18, 245
BslFI GGGAC 3 cut(s) 283, 298, 305
BslI CCNNNNNNNGG 2 cut(s) 52, 129
BsmFI GGGAC 3 cut(s) 283, 298, 305
BsnI GGCC 2 cut(s) 68, 344
Bsp120I GGGCCC 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 211, 346
Bsp143I GATC 3 cut(s) 38, 42, 198
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 4 cut(s) 52, 80, 141, 239
BspANI GGCC 2 cut(s) 68, 344
BspDI ATCGAT 1 cut(s) 41
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 8 cut(s) 183, 243, 277, 313, 314, 321, 343, 344
BspPI GGATC 2 cut(s) 37, 46
BspQI GCTCTTC 2 cut(s) 68, 140
BspT107I GGYRCC 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 279, 315
BssMI GATC 3 cut(s) 38, 42, 198
BssNI GRCGYC 2 cut(s) 276, 296
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 3 cut(s) 47, 179, 317
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 68, 140
BstACI GRCGYC 2 cut(s) 276, 296
BstAFI CTTAAG 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 66, 266
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 31, 150
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 2 cut(s) 80, 278
BstKTI GATC 3 cut(s) 41, 45, 201
BstMBI GATC 3 cut(s) 38, 42, 198
BstMWI GCNNNNNNNGC 4 cut(s) 65, 102, 108, 114
BstNI CCWGG 3 cut(s) 47, 179, 317
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 45, 177, 315
BstSLI GKGCMC 2 cut(s) 211, 346
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 92, 95, 114
BstXI CCANNNNNNTGG 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 2 cut(s) 68, 344
BsuTUI ATCGAT 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 31, 150
Cac8I GCNNGC 2 cut(s) 66, 266
CaiI CAGNNNCTG 1 cut(s) 108
CciI TCATGA 1 cut(s) 213
CfoI GCGC 2 cut(s) 80, 278
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 6 cut(s) 175, 181, 312, 319, 342, 343
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 8, 166
CviAII CATG 6 cut(s) 32, 112, 119, 214, 280, 292
CviJI RGCY 9 cut(s) 64, 68, 105, 133, 172, 268, 338, 344, 352
CviKI_1 RGCY 9 cut(s) 64, 68, 105, 133, 172, 268, 338, 344, 352
CviQI GTAC 2 cut(s) 8, 166
DinI GGCGCC 1 cut(s) 277
DpnI GATC 3 cut(s) 40, 44, 200
DpnII GATC 3 cut(s) 38, 42, 198
Eam1104I CTCTTC 2 cut(s) 68, 140
EarI CTCTTC 2 cut(s) 68, 140
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 346
Eco47I GGWCC 4 cut(s) 175, 181, 312, 319
EcoO109I RGGNCCY 4 cut(s) 181, 312, 342, 343
EcoRII CCWGG 3 cut(s) 45, 177, 315
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 346
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 6 cut(s) 35, 115, 122, 217, 283, 295
FaiI YATR 7 cut(s) 33, 113, 120, 215, 281, 293, 303
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 3 cut(s) 283, 298, 305
FatI CATG 6 cut(s) 31, 111, 118, 213, 279, 291
FauI CCCGC 2 cut(s) 45, 134
Fnu4HI GCNGC 3 cut(s) 103, 106, 109
FokI GGATG 2 cut(s) 38, 157
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 3 cut(s) 103, 106, 109
GlaI GCGC 2 cut(s) 79, 277
GluI GCNGC 3 cut(s) 103, 106, 109
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 2 cut(s) 68, 344
HapII CCGG 2 cut(s) 18, 245
HgaI GACGC 1 cut(s) 285
HhaI GCGC 2 cut(s) 80, 278
Hin1I GRCGYC 2 cut(s) 276, 296
Hin1II CATG 6 cut(s) 35, 115, 122, 217, 283, 295
Hin6I GCGC 2 cut(s) 78, 276
HinP1I GCGC 2 cut(s) 78, 276
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 288
HpaII CCGG 2 cut(s) 18, 245
HphI GGTGA 3 cut(s) 32, 97, 163
Hpy166II GTNNAC 2 cut(s) 154, 166
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 3 cut(s) 127, 202, 214
Hpy8I GTNNAC 2 cut(s) 154, 166
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 102, 108, 114
HpySE526I ACGT 1 cut(s) 13
Hsp92I GRCGYC 2 cut(s) 276, 296
Hsp92II CATG 6 cut(s) 35, 115, 122, 217, 283, 295
HspAI GCGC 2 cut(s) 78, 276
KasI GGCGCC 1 cut(s) 275
KflI GGGWCCC 1 cut(s) 312
Kzo9I GATC 3 cut(s) 38, 42, 198
LguI GCTCTTC 2 cut(s) 68, 140
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 3 cut(s) 92, 95, 114
MaeII ACGT 1 cut(s) 13
MalI GATC 3 cut(s) 40, 44, 200
MbiI CCGCTC 1 cut(s) 52
MboI GATC 3 cut(s) 38, 42, 198
MboII GAAGA 2 cut(s) 85, 127
MhlI GDGCHC 2 cut(s) 211, 346
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 8 cut(s) 16, 79, 123, 182, 198, 210, 328, 356
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 161, 306
MspA1I CMGCKG 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 2 cut(s) 18, 245
MspR9I CCNGG 3 cut(s) 47, 179, 317
MvaI CCWGG 3 cut(s) 47, 179, 317
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 4 cut(s) 65, 102, 108, 114
NarI GGCGCC 1 cut(s) 276
NcoI CCATGG 1 cut(s) 279
NdeII GATC 3 cut(s) 38, 42, 198
NlaIII CATG 6 cut(s) 35, 115, 122, 217, 283, 295
NlaIV GGNNCC 8 cut(s) 183, 243, 277, 313, 314, 321, 343, 344
NmeAIII GCCGAG 1 cut(s) 204
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 161
PagI TCATGA 1 cut(s) 213
PciSI GCTCTTC 2 cut(s) 68, 140
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 3 cut(s) 104, 107, 110
PleI GAGTC 1 cut(s) 296
PluTI GGCGCC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 14
PpuMI RGGWCCY 2 cut(s) 181, 312
Psp5II RGGWCCY 2 cut(s) 181, 312
Psp6I CCWGG 3 cut(s) 45, 177, 315
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 3 cut(s) 45, 177, 315
PspN4I GGNNCC 8 cut(s) 183, 243, 277, 313, 314, 321, 343, 344
PspOMI GGGCCC 1 cut(s) 342
PspPI GGNCC 6 cut(s) 175, 181, 312, 319, 342, 343
PspPPI RGGWCCY 2 cut(s) 181, 312
PstNI CAGNNNCTG 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 105
RsaI GTAC 2 cut(s) 9, 167
RsaNI GTAC 2 cut(s) 8, 166
RseI CAYNNNNRTG 2 cut(s) 161, 306
SapI GCTCTTC 2 cut(s) 68, 140
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 3 cut(s) 103, 106, 109
Sau3AI GATC 3 cut(s) 38, 42, 198
Sau96I GGNCC 6 cut(s) 175, 181, 312, 319, 342, 343
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 3 cut(s) 47, 179, 317
SduI GDGCHC 2 cut(s) 211, 346
SetI ASST 5 cut(s) 16, 107, 174, 221, 270
SfoI GGCGCC 1 cut(s) 277
SinI GGWCC 4 cut(s) 175, 181, 312, 319
SmiMI CAYNNNNRTG 2 cut(s) 161, 306
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 4 cut(s) 52, 80, 141, 239
SspDI GGCGCC 1 cut(s) 275
StyD4I CCNGG 3 cut(s) 45, 177, 315
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 16
TaqI TCGA 3 cut(s) 41, 71, 201
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 3 cut(s) 102, 105, 108
TspDTI ATGAA 1 cut(s) 244
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 4 cut(s) 175, 181, 312, 319
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.