Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004777

Physical Location & Seq

Genomic Coordinates Reverse (-)

7135350 .. 7135730

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1051500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCACTACCAGACCGAGTCATGGGGCTCCTGTATACCCACAAAAACCTCAATGGGCATGGAGGACCCTCTGGAGCACATAGAGCGGATGGTGTCGGAGAACGCGGTGGTGATATTAAGTATAAGAAGCTGTTGCATGTGCCACGCCATCAAACGCCTCTTCTGCGGCATGGGCGTTAACCCCACTGTGTGCGAGTTGGACGAGGACCCCAAAGGTAAGGACTTGGAGAGGGCGTTGATGAGGCGGCTGACGACTTCCTCCACCGTCCCCATCGTCTTCATCAGTGGCAAACTTGTCAGCGCAATGGACAGAGTCATGGTTTCTCATATCAACGGCACTTTTGTTCCTCTTCTTATAGAGGCCGGGGCTCTCTGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048444 GO:0048446 GO:0048448 GO:0048449 GO:0048451 GO:0048465 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

127

Amino Acids

13.98

Weight (kDa)

6.05

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	36 - 99	5e-12	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02000
fragaria_vesca	FvH4_4g23190 FvH4_6g53900
malus_domestica	MD06G1051500.v1.1 MD09G1007400.v1.1 MD13G1124000.v1.1 MD16G1124500.v1.1 MD17G1011300.v1.1
prunus_persica	Prupe.1G221000_v2.0.a1 Prupe.3G309600_v2.0.a1
pyrus_communis	pycom111g00570 pycom16g10640 pycom17g00600
rosa_chinensis	RchiOBHm_Chr2g0176061 RchiOBHm_Chr4g0429551
rosa_laevigata	RLG00000007062 RLG00000022377
rosa_multiflora	Rmu_sc0011610.1_g000004 Rmu_sc0012513.1_g000002 Rmu_sc0013305.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076800 Rroxscaffold_5G00371250
rosa_rugosa	Rorug02G0590100 Rorug04G0237000
rosa_samantha	Rh2AG668900 Rh2BG680500 Rh2CG643400 Rh2DG694200 Rh4DG295400
rosa_wichuraiana	Rw2G054860 Rw4G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	34
AccII	CGCG	1 cut(s)	104
AciI	CCGC	4 cut(s)	85, 104, 165, 244
AdeI	CACNNNGTG	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	21
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw21I	GWGCWC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	64, 205
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	64, 205
BanII	GRGCYC	2 cut(s)	29, 370
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	3 cut(s)	82, 155, 278
BceAI	ACGGC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	364
BisI	GCNGC	2 cut(s)	166, 245
BlsI	GCNGC	2 cut(s)	167, 246
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	2 cut(s)	64, 205
BmgT120I	GGNCC	2 cut(s)	64, 205
BmiI	GGNNCC	3 cut(s)	28, 66, 207
BmrFI	CCNGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	3 cut(s)	29, 78, 370
BspACI	CCGC	4 cut(s)	85, 104, 165, 244
BspANI	GGCC	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	3 cut(s)	28, 66, 207
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	363
BssNAI	GTATAC	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	187, 265
Bst6I	CTCTTC	2 cut(s)	164, 354
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 162, 171
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	268
BstZ17I	GTATAC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	183, 289
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	64, 205
CviAII	CATG	5 cut(s)	21, 58, 136, 169, 316
CviJI	RGCY	6 cut(s)	27, 129, 247, 362, 368, 376
CviKI_1	RGCY	6 cut(s)	27, 129, 247, 362, 368, 376
DraIII	CACNNNGTG	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	164, 354
EarI	CTCTTC	2 cut(s)	164, 354
Eco24I	GRGCYC	2 cut(s)	29, 370
Eco47I	GGWCC	2 cut(s)	64, 205
EcoO109I	RGGNCCY	2 cut(s)	64, 205
EcoT38I	GRGCYC	2 cut(s)	29, 370
FaeI	CATG	5 cut(s)	24, 61, 139, 172, 319
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	5 cut(s)	20, 57, 135, 168, 315
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	166, 245
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	2 cut(s)	29, 370
Fsp4HI	GCNGC	2 cut(s)	166, 245
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	166, 245
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	24, 61, 139, 172, 319
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	17, 312
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	35, 178
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	35, 178
HpyCH4III	ACNGT	2 cut(s)	187, 265
HpyCH4V	TGCA	2 cut(s)	4, 135
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 162, 171
Hsp92II	CATG	5 cut(s)	24, 61, 139, 172, 319
HspAI	GCGC	1 cut(s)	300
KspAI	GTTAAC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	32, 73
LpnPI	CCDG	5 cut(s)	23, 43, 56, 358, 376
MbiI	CCGCTC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	151, 268, 341
MhlI	GDGCHC	3 cut(s)	29, 78, 370
MlyI	GAGTC	2 cut(s)	26, 321
MmeI	TCCRAC	2 cut(s)	75, 177
MseI	TTAA	2 cut(s)	116, 177
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	82, 162, 171
NciI	CCSGG	1 cut(s)	364
NlaIII	CATG	5 cut(s)	24, 61, 139, 172, 319
NlaIV	GGNNCC	3 cut(s)	28, 66, 207
NspI	RCATGY	1 cut(s)	139
PflFI	GACNNNGTC	2 cut(s)	16, 311
PkrI	GCNGC	2 cut(s)	167, 246
PleI	GAGTC	2 cut(s)	25, 320
PpsI	GAGTC	2 cut(s)	25, 320
PpuMI	RGGWCCY	2 cut(s)	64, 205
Psp5II	RGGWCCY	2 cut(s)	64, 205
PspN4I	GGNNCC	3 cut(s)	28, 66, 207
PspPI	GGNCC	2 cut(s)	64, 205
PspPPI	RGGWCCY	2 cut(s)	64, 205
PsyI	GACNNNGTC	2 cut(s)	16, 311
SaqAI	TTAA	2 cut(s)	116, 177
SatI	GCNGC	2 cut(s)	166, 245
Sau96I	GGNCC	2 cut(s)	64, 205
SchI	GAGTC	2 cut(s)	26, 321
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	3 cut(s)	29, 78, 370
SetI	ASST	3 cut(s)	50, 131, 217
SinI	GGWCC	2 cut(s)	64, 205
SsiI	CCGC	4 cut(s)	85, 104, 165, 244
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	187, 265
TaqII	GACCGA	1 cut(s)	29
TauI	GCSGC	2 cut(s)	168, 247
Tru1I	TTAA	2 cut(s)	116, 177
Tru9I	TTAA	2 cut(s)	116, 177
TscAI	CASTG	2 cut(s)	190, 289
TspDTI	ATGAA	1 cut(s)	268
TspRI	CASTG	2 cut(s)	190, 289
Tth111I	GACNNNGTC	2 cut(s)	16, 311
VpaK11BI	GGWCC	2 cut(s)	64, 205
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.