RchiOBHm_Chr2g0176061

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004777
Physical Location & Seq
Forward (+)
88009399 .. 88010221
823 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54309

Sequence Viewer

Length: 375 bp
ATGCATTACCAAACTGAGTCATGGGGTTCTTACATGGCCACGAGCAGTTACGGTGATTCACTGGAGCGCATAGAGAGGATGGCGTCGGAGAACGCGGTGGTGATATTCAGCATCAGCAGCTGTTGCATGTGTCACGCCATCAAGAGGCTCTTCTGCGGCATGGGGGTCAATCCAACGGTGTACGAGCTAGACGAGGATCCCAGAGGAGGCAAGGACTTGGAGAAGGCTCTGATGAGGATCTTGGGGACCTCCAACGCTGTGCCGGTGGTCTTTATCGGTGGGAAGCTCGTCGGAACCATGGACAGAGTCATGGCCTCGCACATTAATGGCTCGCTCGTCCCTCTTCTCAAAGAGGCTGGGGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

124

Amino Acids

13.53

Weight (kDa)

5.87

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 33 - 97 8.4e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 95, 156
AclWI GGATC 3 cut(s) 191, 204, 245
AcoI YGGCCR 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 144, 206
AluBI AGCT 3 cut(s) 120, 187, 286
AluI AGCT 3 cut(s) 120, 187, 286
AlwI GGATC 3 cut(s) 191, 204, 245
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 2 cut(s) 36, 312
ApeKI GCWGC 1 cut(s) 117
AseI ATTAAT 1 cut(s) 324
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 65, 112
AvaII GGWCC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 40
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 73, 146
BfaI CTAG 1 cut(s) 188
BisI GCNGC 2 cut(s) 118, 157
BlsI GCNGC 2 cut(s) 119, 158
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 3 cut(s) 198, 247, 295
BmsI GCATC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 206
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 144, 206
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 38, 314
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 2 cut(s) 259, 323
BslI CCNNNNNNNGG 2 cut(s) 144, 206
BsmFI GGGAC 2 cut(s) 259, 323
BsnI GGCC 2 cut(s) 38, 314
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 196, 237
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 2 cut(s) 95, 156
BspANI GGCC 2 cut(s) 38, 314
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 198, 247, 295
BspPI GGATC 3 cut(s) 191, 204, 245
BspQI GCTCTTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 196, 237
BssNI GRCGYC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 53, 178
Bst6I CTCTTC 2 cut(s) 155, 348
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 199, 240
BstMBI GATC 2 cut(s) 196, 237
BstMWI GCNNNNNNNGC 2 cut(s) 117, 123
BstNSI RCATGY 1 cut(s) 130
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 196, 237
BstYI RGATCY 2 cut(s) 196, 237
BsuRI GGCC 2 cut(s) 38, 314
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 332
CaiI CAGNNNCTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 69
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 181
CviAII CATG 6 cut(s) 21, 34, 127, 160, 298, 310
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 198, 239
DpnII GATC 2 cut(s) 196, 237
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 155, 348
EarI CTCTTC 2 cut(s) 155, 348
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 6 cut(s) 24, 37, 130, 163, 301, 313
FaiI YATR 7 cut(s) 22, 35, 71, 128, 161, 299, 311
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 2 cut(s) 259, 323
FatI CATG 6 cut(s) 20, 33, 126, 159, 297, 309
Fnu4HI GCNGC 2 cut(s) 118, 157
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 118, 157
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 68
GluI GCNGC 2 cut(s) 118, 157
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 38, 314
HapII CCGG 1 cut(s) 263
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 6 cut(s) 24, 37, 130, 163, 301, 313
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 3 cut(s) 17, 56, 306
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 65, 112
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 88, 231, 293, 374
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 88, 293
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 53, 178
HpyCH4V TGCA 2 cut(s) 4, 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 123
HpyF3I CTNAG 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 6 cut(s) 24, 37, 130, 163, 301, 313
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 196, 237
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 47, 214, 276, 342, 352
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 2 cut(s) 47, 131
MalI GATC 2 cut(s) 198, 239
MboI GATC 2 cut(s) 196, 237
MboII GAAGA 2 cut(s) 142, 335
MflI RGATCY 2 cut(s) 196, 237
MhlI GDGCHC 1 cut(s) 364
MlsI TGGCCA 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 2 cut(s) 26, 315
MmeI TCCRAC 4 cut(s) 66, 197, 271, 276
Mox20I TGGCCA 1 cut(s) 38
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 117, 123
NcoI CCATGG 1 cut(s) 297
NdeII GATC 2 cut(s) 196, 237
NlaIII CATG 6 cut(s) 24, 37, 130, 163, 301, 313
NlaIV GGNNCC 3 cut(s) 198, 247, 295
NmuCI GTSAC 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 119, 158
PleI GAGTC 2 cut(s) 25, 314
PpsI GAGTC 2 cut(s) 25, 314
PpuMI RGGWCCY 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 3 cut(s) 198, 247, 295
PspPI GGNCC 1 cut(s) 246
PspPPI RGGWCCY 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 120
PsuI RGATCY 2 cut(s) 196, 237
PsyI GACNNNGTC 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 120
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 118, 157
Sau3AI GATC 2 cut(s) 196, 237
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 2 cut(s) 26, 315
SduI GDGCHC 1 cut(s) 364
SetI ASST 4 cut(s) 122, 189, 251, 288
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 324
SsiI CCGC 2 cut(s) 95, 156
SspMI CTAG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 53, 178
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 131
TspRI CASTG 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 246
VspI ATTAAT 1 cut(s) 324
XceI RCATGY 1 cut(s) 130
XspI CTAG 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.