Rorug04G0237000

glutaredoxin-C1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001851
Physical Location & Seq
Forward (+)
40348436 .. 40350991
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0237000.1

Sequence Viewer

Length: 1092 bp
ATGCCATCGTTATTCGTCAACAAATCAAAAAATATTGACACTGTTTTCCCTTCCCCTCAAATTCTTGTTGCCCCCACAATCACATGGAGCCTTCACATCCCCAAACGGTCCAAAACTCTCAAAACTTCTAGCGAAATCCCACACTCCACTCCACCTCACCTAATACAAACCACAGAGCCCAGATTCCATGCTCTGCTTCTCCAACCTCATATAGTGCACCCTTCCCTTCCCTTCTCAATGTTTCGCAGATTCCTCACCACCTCTCTCTCCTCCCGCACCAACCCCCCTCCTCTCCTCTTCCTCCTCTCCCCCAAAACCCCCAATTCCCTCTCCCCCAATCCAAACCCTAACCCCCGATTCCTCTCCCAAATGTCCGACGCCCGCCGCCCCACCTCCGCCTCCATCCCCGCCCTCGACAAAGCCGACCGCTCCGACCTCCTCCGCGCCCTCGAGTCCTCCCTCGGCTCCGCCTTCACCTCCGAGCCCCTCTGCCCCGCCCCTTCCCCCCTCATCATCGTCATCAGCGGCCCCAGCGGCGTCGGCAAAGACGCCGTGATAAAAAAGCTCCGGGATGTCAACCCTAACCTCCATTTCGTCGTCACGGCGACGAGCCGGCCCATCCGGCCCGGCGAGGTCCACGGTAAAGACTATTACTTTGTGAGCAAGGAAGAGTTTTTGAGTATGGTGCATAAAGATGAGCTTCTGGAATATGCATTGGTGTATGGGGACTATAAGGGGATTCCGAAACAGCAGATTAGGGATTACATGGGGAAAGGGCATGACATTGTGTTGAGAGTTGATATTCAGGGGGCTCAGACTTTGAGGAGGATTTTGGGGGATTCTGCTGTGTTTATATTCTTGATGGCTGAGAGTGAGGCTAAGCTGGTGGAGAGGTTGGTGGATAGGAAGACCGAGACGAAGGAGTCTTTGCTTGTGAGGATTGCGACGGCCAGGGAGGAGGTGAAGCATGTCAAGAGTTTTGATTATGTGGTGGTGAATGCCGAGGGGAGGCTGGACAATGCGGTGCAGTTAGTGCAGTCGATTATTTGCGCCGAGAAGGCCAAGGTTCACCAGAGGAGAAGTGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

363

Amino Acids

40.5

Weight (kDa)

9.65

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Guanylate_kin PF00625 172 - 351 4.5e-39 Guanylate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 922
AccBSI CCGCTC 1 cut(s) 429
AccII CGCG 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 948
AcsI RAATTY 1 cut(s) 60
AcyI GRCGYC 3 cut(s) 378, 537, 549
AfiI CCNNNNNNNGG 1 cut(s) 1008
AjnI CCWGG 1 cut(s) 950
AluBI AGCT 3 cut(s) 565, 700, 883
AluI AGCT 3 cut(s) 565, 700, 883
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 908
Alw44I GTGCAC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 5 cut(s) 526, 614, 623, 948, 1059
ApaLI GTGCAC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 60
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
AspLEI GCGC 2 cut(s) 446, 1052
AspS9I GGNCC 5 cut(s) 108, 527, 615, 624, 634
AsuC2I CCSGG 2 cut(s) 569, 627
AsuHPI GGTGA 6 cut(s) 149, 247, 466, 973, 1006, 1061
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 2 cut(s) 108, 634
BaeGI GKGCMC 1 cut(s) 219
BanII GRGCYC 3 cut(s) 180, 486, 814
BbsI GAAGAC 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 4 cut(s) 13, 410, 626, 856
BceAI ACGGC 3 cut(s) 536, 618, 963
BciT130I CCWGG 1 cut(s) 952
BcnI CCSGG 2 cut(s) 569, 627
BcoDI GTCTC 1 cut(s) 908
BfaI CTAG 1 cut(s) 129
BglI GCCNNNNNGGC 3 cut(s) 534, 622, 1058
BisI GCNGC 3 cut(s) 385, 526, 535
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 3 cut(s) 386, 527, 536
Bme1390I CCNGG 3 cut(s) 569, 627, 952
Bme18I GGWCC 2 cut(s) 108, 634
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 5 cut(s) 108, 527, 615, 624, 634
BmiI GGNNCC 3 cut(s) 89, 466, 529
BmrFI CCNGG 3 cut(s) 569, 627, 952
BpiI GAAGAC 1 cut(s) 914
Bpu1102I GCTNAGC 1 cut(s) 879
BpuMI CCSGG 2 cut(s) 569, 627
BsaHI GRCGYC 3 cut(s) 378, 537, 549
BsaJI CCNNGG 5 cut(s) 460, 637, 951, 1002, 1062
Bsc4I CCNNNNNNNGG 1 cut(s) 1008
Bse118I RCCGGY 1 cut(s) 612
BseBI CCWGG 1 cut(s) 952
BseDI CCNNGG 5 cut(s) 460, 637, 951, 1002, 1062
BseGI GGATG 4 cut(s) 96, 402, 577, 618
BseLI CCNNNNNNNGG 1 cut(s) 1008
BseMII CTCAG 2 cut(s) 827, 858
BseRI GAGGAG 8 cut(s) 259, 279, 284, 293, 428, 838, 971, 1090
BseSI GKGCMC 1 cut(s) 219
BseYI CCCAGC 1 cut(s) 530
BsgI GTGCAG 2 cut(s) 1046, 1055
Bsh1236I CGCG 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 5 cut(s) 528, 616, 625, 950, 1061
BsiEI CGRYCG 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 4 cut(s) 568, 613, 622, 627
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 1 cut(s) 1008
BsmAI GTCTC 1 cut(s) 908
BsmBI CGTCTC 1 cut(s) 908
BsmFI GGGAC 1 cut(s) 740
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 5 cut(s) 528, 616, 625, 950, 1061
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 4 cut(s) 180, 219, 486, 814
Bsp1720I GCTNAGC 1 cut(s) 879
BspANI GGCC 5 cut(s) 528, 616, 625, 950, 1061
BspCNI CTCAG 2 cut(s) 826, 859
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 3 cut(s) 89, 466, 529
BsrBI CCGCTC 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 612
BssECI CCNNGG 5 cut(s) 460, 637, 951, 1002, 1062
BssNI GRCGYC 3 cut(s) 378, 537, 549
BssT1I CCWWGG 1 cut(s) 1062
Bst2UI CCWGG 1 cut(s) 952
Bst4CI ACNGT 3 cut(s) 43, 108, 641
Bst6I CTCTTC 2 cut(s) 302, 663
BstACI GRCGYC 3 cut(s) 378, 537, 549
BstAPI GCANNNNNTGC 1 cut(s) 1033
BstC8I GCNNGC 2 cut(s) 382, 614
BstDEI CTNAG 3 cut(s) 813, 867, 879
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 4 cut(s) 96, 402, 577, 618
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 2 cut(s) 446, 1052
BstMAI GTCTC 1 cut(s) 908
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 6 cut(s) 531, 534, 540, 622, 1033, 1058
BstNI CCWGG 1 cut(s) 952
BstNSI RCATGY 1 cut(s) 971
BstSCI CCNGG 3 cut(s) 567, 625, 950
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 914
BsuRI GGCC 5 cut(s) 528, 616, 625, 950, 1061
BtgI CCRYGG 1 cut(s) 637
BtsCI GGATG 4 cut(s) 96, 402, 577, 618
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 382, 614
CfoI GCGC 2 cut(s) 446, 1052
Cfr10I RCCGGY 1 cut(s) 612
Cfr13I GGNCC 5 cut(s) 108, 527, 615, 624, 634
CseI GACGC 3 cut(s) 386, 526, 557
CviAII CATG 5 cut(s) 84, 188, 766, 779, 968
DdeI CTNAG 3 cut(s) 813, 867, 879
DrdI GACNNNNNNGTC 1 cut(s) 922
DseDI GACNNNNNNGTC 1 cut(s) 922
EaeI YGGCCR 1 cut(s) 948
Eam1104I CTCTTC 2 cut(s) 302, 663
EarI CTCTTC 2 cut(s) 302, 663
EciI GGCGGA 2 cut(s) 385, 457
Eco130I CCWWGG 1 cut(s) 1062
Eco24I GRGCYC 3 cut(s) 180, 486, 814
Eco47I GGWCC 2 cut(s) 108, 634
Eco88I CYCGRG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 950
EcoT14I CCWWGG 1 cut(s) 1062
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 3 cut(s) 180, 486, 814
ErhI CCWWGG 1 cut(s) 1062
Esp3I CGTCTC 1 cut(s) 908
FaeI CATG 5 cut(s) 87, 191, 769, 782, 971
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 740
FatI CATG 5 cut(s) 83, 187, 765, 778, 967
FauI CCCGC 4 cut(s) 281, 389, 415, 502
Fnu4HI GCNGC 3 cut(s) 385, 526, 535
FokI GGATG 4 cut(s) 83, 389, 584, 605
FriOI GRGCYC 3 cut(s) 180, 486, 814
Fsp4HI GCNGC 3 cut(s) 385, 526, 535
FspBI CTAG 1 cut(s) 129
GlaI GCGC 2 cut(s) 445, 1051
GluI GCNGC 3 cut(s) 385, 526, 535
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 5 cut(s) 528, 616, 625, 950, 1061
HapII CCGG 4 cut(s) 568, 613, 622, 627
HgaI GACGC 3 cut(s) 386, 526, 557
HhaI GCGC 2 cut(s) 446, 1052
Hin1I GRCGYC 3 cut(s) 378, 537, 549
Hin1II CATG 5 cut(s) 87, 191, 769, 782, 971
Hin6I GCGC 2 cut(s) 444, 1050
HinP1I GCGC 2 cut(s) 444, 1050
HincII GTYRAC 2 cut(s) 19, 577
HindII GTYRAC 2 cut(s) 19, 577
HinfI GANTC 7 cut(s) 183, 249, 357, 452, 739, 839, 923
HpaII CCGG 4 cut(s) 568, 613, 622, 627
HphI GGTGA 6 cut(s) 149, 247, 466, 973, 1006, 1061
Hpy166II GTNNAC 5 cut(s) 19, 217, 577, 637, 1069
Hpy188I TCNGA 5 cut(s) 376, 433, 481, 744, 816
Hpy188III TCNNGA 3 cut(s) 704, 859, 973
Hpy8I GTNNAC 5 cut(s) 19, 217, 577, 637, 1069
Hpy99I CGWCG 5 cut(s) 380, 542, 599, 610, 949
HpyAV CCTTC 9 cut(s) 60, 101, 231, 236, 241, 481, 510, 913, 1051
HpyCH4III ACNGT 3 cut(s) 43, 108, 641
HpyCH4V TGCA 5 cut(s) 217, 688, 713, 1027, 1036
HpyF10VI GCNNNNNNNGC 6 cut(s) 531, 534, 540, 622, 1033, 1058
HpyF3I CTNAG 3 cut(s) 813, 867, 879
Hsp92I GRCGYC 3 cut(s) 378, 537, 549
Hsp92II CATG 5 cut(s) 87, 191, 769, 782, 971
HspAI GCGC 2 cut(s) 444, 1050
KroI GCCGGC 1 cut(s) 612
KroNI GCCGGC 1 cut(s) 614
LmnI GCTCC 4 cut(s) 87, 434, 470, 570
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 598
MbiI CCGCTC 1 cut(s) 429
MboII GAAGA 3 cut(s) 289, 680, 919
MhlI GDGCHC 4 cut(s) 180, 219, 486, 814
MluCI AATT 2 cut(s) 60, 322
MlyI GAGTC 2 cut(s) 461, 932
MmeI TCCRAC 3 cut(s) 226, 399, 456
Mph1103I ATGCAT 1 cut(s) 715
MroNI GCCGGC 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 525, 534
MspI CCGG 4 cut(s) 568, 613, 622, 627
MspR9I CCNGG 3 cut(s) 569, 627, 952
Mva1269I GAATGC 1 cut(s) 1003
MvaI CCWGG 1 cut(s) 952
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 6 cut(s) 531, 534, 540, 622, 1033, 1058
NaeI GCCGGC 1 cut(s) 614
NciI CCSGG 2 cut(s) 569, 627
NgoMIV GCCGGC 1 cut(s) 612
NlaIII CATG 5 cut(s) 87, 191, 769, 782, 971
NlaIV GGNNCC 3 cut(s) 89, 466, 529
NmeAIII GCCGAG 3 cut(s) 441, 1027, 1078
NmuCI GTSAC 1 cut(s) 598
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 971
PaeR7I CTCGAG 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PctI GAATGC 1 cut(s) 1003
PdiI GCCGGC 1 cut(s) 614
PfeI GAWTC 5 cut(s) 183, 249, 357, 739, 839
PfoI TCCNGGA 1 cut(s) 567
PkrI GCNGC 3 cut(s) 386, 527, 536
PleI GAGTC 2 cut(s) 460, 931
PpsI GAGTC 2 cut(s) 460, 931
Psp6I CCWGG 1 cut(s) 950
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 950
PspN4I GGNNCC 3 cut(s) 89, 466, 529
PspPI GGNCC 5 cut(s) 108, 527, 615, 624, 634
PspXI VCTCGAGB 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 693
SatI GCNGC 3 cut(s) 385, 526, 535
Sau96I GGNCC 5 cut(s) 108, 527, 615, 624, 634
SchI GAGTC 2 cut(s) 461, 932
ScrFI CCNGG 3 cut(s) 569, 627, 952
SduI GDGCHC 4 cut(s) 180, 219, 486, 814
SfiI GGCCNNNNNGGCC 1 cut(s) 622
Sfr274I CTCGAG 1 cut(s) 449
SinI GGWCC 2 cut(s) 108, 634
SlaI CTCGAG 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 2 cut(s) 60, 322
SspI AATATT 1 cut(s) 34
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 567, 625, 950
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 3 cut(s) 43, 108, 641
TaqI TCGA 3 cut(s) 414, 450, 1040
TaqII GACCGA 1 cut(s) 926
TasI AATT 2 cut(s) 60, 322
TauI GCSGC 3 cut(s) 387, 528, 537
TfiI GAWTC 5 cut(s) 183, 249, 357, 739, 839
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 598
Tsp45I GTSAC 1 cut(s) 598
TspRI CASTG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 108, 634
XapI RAATTY 1 cut(s) 60
XceI RCATGY 1 cut(s) 971
XhoI CTCGAG 1 cut(s) 449
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.