Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

37880960 .. 37882189

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAGAAGAATATTAAAGCACTTGAACAAATATTAAAGGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATACACTGATTTTGAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGATGGACTGAAAAATCATTCAAAAATCTACATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCATTAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTATGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGATATTATTGATGAAGAAGATAAAAAGTTGAAAAATTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAAGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTGAAGCAATGGAACGCGCTTAAGAACACGAAGCGGCGAAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

245

Amino Acids

28.68

Weight (kDa)

7.7

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	108 - 239	3e-50	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	707
AciI	CCGC	1 cut(s)	724
AcsI	RAATTY	3 cut(s)	209, 532, 640
AcuI	CTGAAG	1 cut(s)	713
AfeI	AGCGCT	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	466, 615
AflII	CTTAAG	1 cut(s)	710
AluBI	AGCT	6 cut(s)	70, 103, 193, 256, 547, 634
AluI	AGCT	6 cut(s)	70, 103, 193, 256, 547, 634
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	476
Aor51HI	AGCGCT	1 cut(s)	36
AoxI	GGCC	2 cut(s)	138, 264
ApaI	GGGCCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	256, 362
ApoI	RAATTY	3 cut(s)	209, 532, 640
AspLEI	GCGC	2 cut(s)	37, 709
AspS9I	GGNCC	3 cut(s)	139, 264, 265
AsuHPI	GGTGA	2 cut(s)	344, 583
BaeGI	GKGCMC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	2 cut(s)	329, 545
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	243, 374
BccI	CCATC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	736
BfmI	CTRYAG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	710
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	257, 363, 725
BlsI	GCNGC	3 cut(s)	258, 364, 726
BmgT120I	GGNCC	3 cut(s)	139, 264, 265
BmiI	GGNNCC	3 cut(s)	265, 266, 458
BpiI	GAAGAC	2 cut(s)	329, 545
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 615
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	704
BseGI	GGATG	2 cut(s)	484, 559
BseLI	CCNNNNNNNGG	2 cut(s)	466, 615
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	2 cut(s)	90, 534
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	243, 374
BseYI	CCCAGC	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	707
BshFI	GGCC	2 cut(s)	140, 266
BsiHKAI	GWGCWC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	466, 615
BsmAI	GTCTC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	140, 266
Bsp120I	GGGCCC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	268, 422
Bsp143I	GATC	2 cut(s)	199, 334
BspACI	CCGC	1 cut(s)	724
BspANI	GGCC	2 cut(s)	140, 266
BspCNI	CTCAG	2 cut(s)	89, 535
BspFNI	CGCG	1 cut(s)	707
BspLI	GGNNCC	3 cut(s)	265, 266, 458
BspMAI	CTGCAG	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	609
BssMI	GATC	2 cut(s)	199, 334
BssNAI	GTATAC	1 cut(s)	562
Bst1107I	GTATAC	1 cut(s)	562
BstAFI	CTTAAG	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	76, 543
BstF5I	GGATG	2 cut(s)	484, 559
BstFNI	CGCG	1 cut(s)	707
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 709
BstKTI	GATC	2 cut(s)	202, 337
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	199, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	2 cut(s)	243, 374
BstV2I	GAAGAC	2 cut(s)	329, 545
BstZ17I	GTATAC	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	140, 266
BtsCI	GGATG	2 cut(s)	484, 559
BtsI	GCAGTG	2 cut(s)	126, 414
BtsIMutI	CAGTG	4 cut(s)	126, 221, 414, 616
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	2 cut(s)	37, 709
Cfr13I	GGNCC	3 cut(s)	139, 264, 265
DdeI	CTNAG	2 cut(s)	76, 543
DpnI	GATC	2 cut(s)	201, 336
DpnII	GATC	2 cut(s)	199, 334
DraI	TTTAAA	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	268
Eco47III	AGCGCT	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	268
FaiI	YATR	8 cut(s)	378, 425, 438, 463, 476, 562, 603, 621
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	257, 363, 725
FokI	GGATG	2 cut(s)	491, 566
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	3 cut(s)	257, 363, 725
FspBI	CTAG	1 cut(s)	736
GlaI	GCGC	2 cut(s)	36, 708
GluI	GCNGC	3 cut(s)	257, 363, 725
GsaI	CCCAGC	1 cut(s)	551
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	140, 266
HhaI	GCGC	2 cut(s)	37, 709
Hin6I	GCGC	2 cut(s)	35, 707
HinP1I	GCGC	2 cut(s)	35, 707
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	2 cut(s)	344, 583
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	4 cut(s)	30, 79, 208, 693
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	4 cut(s)	175, 226, 340, 652
HpyCH4V	TGCA	3 cut(s)	259, 362, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	76, 543
HspAI	GCGC	2 cut(s)	35, 707
Kzo9I	GATC	2 cut(s)	199, 334
LmnI	GCTCC	4 cut(s)	108, 184, 190, 240
Lsp1109I	GCAGC	2 cut(s)	243, 374
MaeI	CTAG	1 cut(s)	736
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	2 cut(s)	201, 336
MboI	GATC	2 cut(s)	199, 334
MboII	GAAGA	8 cut(s)	25, 157, 334, 384, 401, 524, 527, 550
MhlI	GDGCHC	2 cut(s)	268, 422
MluCI	AATT	9 cut(s)	84, 89, 209, 279, 451, 532, 590, 604, 640
MnlI	CCTC	8 cut(s)	121, 130, 231, 396, 424, 609, 648, 667
MseI	TTAA	7 cut(s)	153, 173, 278, 584, 645, 669, 711
MslI	CAYNNNNRTG	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	2 cut(s)	199, 334
NlaIV	GGNNCC	3 cut(s)	265, 266, 458
NmuCI	GTSAC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	258, 364, 726
PspFI	CCCAGC	1 cut(s)	547
PspN4I	GGNNCC	3 cut(s)	265, 266, 458
PspOMI	GGGCCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	139, 264, 265
PstI	CTGCAG	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	7 cut(s)	153, 173, 278, 584, 645, 669, 711
SatI	GCNGC	3 cut(s)	257, 363, 725
Sau3AI	GATC	2 cut(s)	199, 334
Sau96I	GGNCC	3 cut(s)	139, 264, 265
SduI	GDGCHC	2 cut(s)	268, 422
SetI	ASST	9 cut(s)	72, 105, 195, 258, 471, 549, 570, 620, 636
SfcI	CTRYAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	9 cut(s)	84, 89, 209, 279, 451, 532, 590, 604, 640
SsiI	CCGC	1 cut(s)	724
SspI	AATATT	2 cut(s)	151, 171
SspMI	CTAG	1 cut(s)	736
TasI	AATT	9 cut(s)	84, 89, 209, 279, 451, 532, 590, 604, 640
TauI	GCSGC	1 cut(s)	727
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	7 cut(s)	153, 173, 278, 584, 645, 669, 711
Tru9I	TTAA	7 cut(s)	153, 173, 278, 584, 645, 669, 711
TscAI	CASTG	4 cut(s)	126, 228, 414, 616
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	256, 362
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	3 cut(s)	525, 570, 612
TspRI	CASTG	4 cut(s)	126, 228, 414, 616
Vha464I	CTTAAG	1 cut(s)	710
XapI	RAATTY	3 cut(s)	209, 532, 640
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.