Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

16193235 .. 16194370

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATCACCCGCTGCAAGACAGTGTTGGATCTGCAGGCTTTGCCCGAAGGATGCATAGCAAACATCATCTCATTCACGACTCCTAGAGATGCCTGCAGGCTGTCCTCGCTTTCCAGGATTTTCATGTCGGCCGCGGAATCCGACACCATTTGGTTCAAGTTCATTCCGCCTGAGATCCATTCACCACTATCTCCTCTCTATTGCCTTTCCAAATCCAAGAAGGAGCTTTACCTTGCACTATGTGATTCCCCAGCACTCATTGACGAGGGCAAGATGAGTTTGTCACTGGACAAGTGGAGTGGGAAGAAATGTTACATGATATCTGCAAGGAGCCTTCAGATTATTTGGTCTGATACTCCTCAATATTGGAGATGGATTTCTTTCCCTGACACCAGGTTTGAGGAGGTGGCTGAGCTTCTTGGTGTTTGGTGGCTTGAAATCAGTGGAAAAATTGATAGACGCATGATGTCTCCGTCGACTCTGTATAAAGCTTATCTTGTCTACAGGTTAACTGCAATGTCTTATGGATTTGAGTGCCAATCTGTGGAGGTCACAGTTGGAGGAGAATCTAATAAGCGGATTGTGTTTCTGGAAGATGCGGGGCGGATAAAGAAGAGATCGGTATATTGGACTCACTTTTTGGGTTTGCATGCCGCACTGGTACAGGCACAGTCATCGTCCCAGCCCAGAGAAATCGAATTAGCTCGTCAATATCCAAAGGAAAGAGCTGACGGCTGGTTGGAGATCGAACTGGGTGAATTTTTCTGTGAAGGAGGTGAAGAAGAAGATGGGGAATTGGAGATGACTTGTTCCGAGATCAACGGTGCTTTCGCCAAGGGTGGCCTCATTGTTCAAGGGATTGAGGTCAGACCCAACAGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

294

Amino Acids

33.44

Weight (kDa)

5.48

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	102 - 291	1.4e-53	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccI	GTMKAC	2 cut(s)	476, 501
AccII	CGCG	1 cut(s)	134
AciI	CCGC	8 cut(s)	10, 132, 134, 167, 577, 599, 604, 654
AclWI	GGATC	2 cut(s)	36, 169
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	663
AfiI	CCNNNNNNNGG	1 cut(s)	544
AgsI	TTSAA	3 cut(s)	157, 437, 854
AjnI	CCWGG	2 cut(s)	113, 392
AluBI	AGCT	5 cut(s)	226, 415, 491, 704, 728
AluI	AGCT	5 cut(s)	226, 415, 491, 704, 728
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	36, 169
AoxI	GGCC	2 cut(s)	129, 841
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	758
ArsI	GACNNNNNNTTYG	4 cut(s)	380, 412, 622, 654
AsuHPI	GGTGA	3 cut(s)	174, 767, 788
BarI	GAAGNNNNNNTAC	4 cut(s)	212, 244, 296, 328
BccI	CCATC	2 cut(s)	366, 782
BceAI	ACGGC	1 cut(s)	748
BcgI	CGANNNNNNTGC	2 cut(s)	657, 691
BciT130I	CCWGG	2 cut(s)	115, 394
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	3 cut(s)	32, 94, 502
BisI	GCNGC	3 cut(s)	13, 132, 654
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	14, 133, 655
Bme1390I	CCNGG	2 cut(s)	115, 394
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	115, 394
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	3 cut(s)	41, 79, 586
BmuI	ACTGGG	1 cut(s)	761
Bpu1102I	GCTNAGC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	132, 834
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse1I	ACTGG	3 cut(s)	291, 663, 756
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	115, 394
BseDI	CCNNGG	2 cut(s)	132, 834
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	162, 402
BseNI	ACTGG	3 cut(s)	291, 663, 756
BseRI	GAGGAG	4 cut(s)	183, 348, 416, 576
BseX3I	CGGCCG	1 cut(s)	129
BseYI	CCCAGC	2 cut(s)	250, 681
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	131, 843
BsiEI	CGRYCG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	131, 843
Bsp143I	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	8 cut(s)	10, 132, 134, 167, 577, 599, 604, 654
BspANI	GGCC	2 cut(s)	131, 843
BspCNI	CTCAG	2 cut(s)	163, 403
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	332
BspMAI	CTGCAG	2 cut(s)	36, 98
BspPI	GGATC	2 cut(s)	36, 169
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	291, 663, 756
BssECI	CCNNGG	2 cut(s)	132, 834
BssMI	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	2 cut(s)	115, 394
Bst4CI	ACNGT	4 cut(s)	22, 556, 672, 824
Bst6I	CTCTTC	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstC8I	GCNNGC	4 cut(s)	36, 94, 98, 651
BstDEI	CTNAG	2 cut(s)	171, 411
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	134
BstKTI	GATC	6 cut(s)	6, 31, 177, 620, 747, 819
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 106
BstNI	CCWGG	2 cut(s)	115, 394
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	113, 392
BstSFI	CTRYAG	3 cut(s)	32, 94, 502
BstUI	CGCG	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	28, 174
BstYI	RGATCY	2 cut(s)	28, 174
BstZI	CGGCCG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	131, 843
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	4 cut(s)	27, 284, 448, 656
Cac8I	GCNNGC	4 cut(s)	36, 94, 98, 651
Cfr42I	CCGCGG	1 cut(s)	135
CseI	GACGC	1 cut(s)	468
CsiI	ACCWGGT	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	662
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	4 cut(s)	124, 316, 463, 650
CviQI	GTAC	1 cut(s)	662
DdeI	CTNAG	2 cut(s)	171, 411
DpnI	GATC	6 cut(s)	5, 30, 176, 619, 746, 818
DpnII	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
DraIII	CACNNNGTG	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	129
EagI	CGGCCG	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
EciI	GGCGGA	2 cut(s)	156, 619
EclXI	CGGCCG	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	834
Eco32I	GATATC	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	113, 392
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	834
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	4 cut(s)	127, 319, 466, 653
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	4 cut(s)	123, 315, 462, 649
FauI	CCCGC	2 cut(s)	17, 592
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	476, 501
Fnu4HI	GCNGC	3 cut(s)	13, 132, 654
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	3 cut(s)	13, 132, 654
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	13, 132, 654
GsaI	CCCAGC	2 cut(s)	254, 685
HaeIII	GGCC	2 cut(s)	131, 843
HgaI	GACGC	1 cut(s)	468
Hin1II	CATG	4 cut(s)	127, 319, 466, 653
HincII	GTYRAC	2 cut(s)	477, 510
HindII	GTYRAC	2 cut(s)	477, 510
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	6 cut(s)	79, 137, 245, 478, 566, 631
HpaI	GTTAAC	1 cut(s)	510
HphI	GGTGA	3 cut(s)	174, 767, 788
Hpy166II	GTNNAC	3 cut(s)	477, 502, 510
Hpy188I	TCNGA	5 cut(s)	142, 339, 352, 814, 869
Hpy188III	TCNNGA	2 cut(s)	76, 590
Hpy8I	GTNNAC	3 cut(s)	477, 502, 510
Hpy99I	CGWCG	1 cut(s)	478
HpyAV	CCTTC	4 cut(s)	41, 214, 344, 764
HpyCH4III	ACNGT	4 cut(s)	22, 556, 672, 824
HpyCH4V	TGCA	8 cut(s)	15, 34, 54, 96, 236, 326, 515, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 106
HpyF3I	CTNAG	2 cut(s)	171, 411
Hsp92II	CATG	4 cut(s)	127, 319, 466, 653
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	510
KspI	CCGCGG	1 cut(s)	135
Kzo9I	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
LmnI	GCTCC	2 cut(s)	223, 330
LweI	GCATC	3 cut(s)	41, 79, 586
MabI	ACCWGGT	1 cut(s)	392
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	282, 311, 550
MalI	GATC	6 cut(s)	5, 30, 176, 619, 746, 818
MboI	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
MboII	GAAGA	6 cut(s)	316, 605, 625, 791, 794, 797
MflI	RGATCY	2 cut(s)	28, 174
MluCI	AATT	4 cut(s)	450, 698, 758, 794
MlyI	GAGTC	3 cut(s)	73, 472, 625
MmeI	TCCRAC	4 cut(s)	6, 165, 538, 720
Mph1103I	ATGCAT	1 cut(s)	56
MseI	TTAA	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	12, 134
MspR9I	CCNGG	2 cut(s)	115, 394
MvaI	CCWGG	2 cut(s)	115, 394
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	40, 106
NdeII	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
NlaIII	CATG	4 cut(s)	127, 319, 466, 653
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	2 cut(s)	282, 550
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	137, 245, 566
PflMI	CCANNNNNTGG	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	14, 133, 655
PleI	GAGTC	3 cut(s)	73, 472, 625
PpsI	GAGTC	3 cut(s)	73, 472, 625
Psp6I	CCWGG	2 cut(s)	113, 392
PspFI	CCCAGC	2 cut(s)	250, 681
PspGI	CCWGG	2 cut(s)	113, 392
PspN4I	GGNNCC	1 cut(s)	332
PstI	CTGCAG	2 cut(s)	36, 98
PsuI	RGATCY	2 cut(s)	28, 174
RsaI	GTAC	1 cut(s)	663
RsaNI	GTAC	1 cut(s)	662
SacII	CCGCGG	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	3 cut(s)	13, 132, 654
Sau3AI	GATC	6 cut(s)	3, 28, 174, 617, 744, 816
SbfI	CCTGCAGG	1 cut(s)	98
SchI	GAGTC	3 cut(s)	73, 472, 625
ScrFI	CCNGG	2 cut(s)	115, 394
SdaI	CCTGCAGG	1 cut(s)	98
SexAI	ACCWGGT	1 cut(s)	392
SfaNI	GCATC	3 cut(s)	41, 79, 586
SfcI	CTRYAG	3 cut(s)	32, 94, 502
Sfr303I	CCGCGG	1 cut(s)	135
SgrBI	CCGCGG	1 cut(s)	135
SphI	GCATGC	1 cut(s)	653
Sse8387I	CCTGCAGG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	450, 698, 758, 794
SsiI	CCGC	8 cut(s)	10, 132, 134, 167, 577, 599, 604, 654
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	113, 392
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	4 cut(s)	22, 556, 672, 824
TaqI	TCGA	3 cut(s)	476, 696, 747
TasI	AATT	4 cut(s)	450, 698, 758, 794
TauI	GCSGC	2 cut(s)	134, 656
TfiI	GAWTC	3 cut(s)	137, 245, 566
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	4 cut(s)	27, 291, 448, 663
TseFI	GTSAC	2 cut(s)	282, 550
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	2 cut(s)	282, 550
TspDTI	ATGAA	2 cut(s)	112, 151
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	4 cut(s)	27, 291, 448, 663
Van91I	CCANNNNNTGG	1 cut(s)	544
XapI	RAATTY	1 cut(s)	758
XceI	RCATGY	1 cut(s)	653
XmiI	GTMKAC	2 cut(s)	476, 501
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.