Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Forward (+)

20094160 .. 20095226

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATGAGTCTTCTTTCGTGGTTCCCTATACTTGAAGATCTGACTTTAGATGGAACCATAGGAGATGAGGAACTGAATTTGGATATCATTGCACCAAAGCTGAAGACATTAACAATAAGTTTGTGCACTGAACCTGAAGCTGAAAGTGATAGTGAAAGTGAGAATGAAGGCGGTGAAGATGAAAATGAAGATCATAATGTCATTGCCAATATCAATCTCTATGATCATTCTGCAAGTGAGCACCCTACATTTGCTAACCGTGCATTGGCGCTTTTCGAATGTGAAGTATCTGTCTCTTTCAACTCATTGTTTGGAAATATTCTCGATAGATCACCGAATCTGGAATGTCTTGTTCTAGATCGTGAGGTTGAAAGCTGTGCCTCTACTACTGAACAATGCTCGGAGAATCCATTGGAAACTCTAGAAGCTGTACCTCTTTGTTTAACGTCAAAATTGAAGACTATATCTATAATCAGATTCAAAGGACATCGAGAAGAGATGGAAGTCGTGAAATACTTCTTAAAGAATAGTCTAGCTTTGAAGACGATGACCATCTCTGCGGTAAGGAATTGTGGAGATGCAAAGCAGGTGCAGAAGAATTTATTTATGTTTCCAAGAGGTTCGGAGACTTGTCAGGTTGAGTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

216

Amino Acids

24.17

Weight (kDa)

4.48

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	144 - 185	1.4e-15	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
AciI	CCGC	2 cut(s)	171, 560
AcsI	RAATTY	2 cut(s)	76, 598
AcuI	CTGAAG	2 cut(s)	122, 156
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	6 cut(s)	35, 301, 371, 457, 481, 541
AluBI	AGCT	5 cut(s)	100, 140, 375, 428, 536
AluI	AGCT	5 cut(s)	100, 140, 375, 428, 536
Alw21I	GWGCWC	2 cut(s)	128, 243
Alw26I	GTCTC	2 cut(s)	298, 620
Alw44I	GTGCAC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	76, 598
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	185, 324
AsuII	TTCGAA	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	128
BbsI	GAAGAC	4 cut(s)	2, 110, 464, 548
Bbv12I	GWGCWC	2 cut(s)	128, 243
BccI	CCATC	3 cut(s)	44, 493, 560
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	298, 620
BfaI	CTAG	3 cut(s)	356, 422, 533
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	23, 55
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	4 cut(s)	2, 110, 464, 548
Bpu14I	TTCGAA	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	87, 201
Bse8I	GATNNNNATC	1 cut(s)	551
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	2 cut(s)	87, 201
BseSI	GKGCMC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	611
BsiHKAI	GWGCWC	2 cut(s)	128, 243
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	298, 620
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	128, 243
Bsp143I	GATC	5 cut(s)	37, 190, 223, 329, 358
BspACI	CCGC	2 cut(s)	171, 560
BspLI	GGNNCC	2 cut(s)	23, 55
BspMI	ACCTGC	1 cut(s)	577
BspT104I	TTCGAA	1 cut(s)	276
BsrDI	GCAATG	2 cut(s)	87, 201
BssMI	GATC	5 cut(s)	37, 190, 223, 329, 358
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	489
BstBI	TTCGAA	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	5 cut(s)	40, 193, 226, 332, 361
BstMAI	GTCTC	2 cut(s)	298, 620
BstMBI	GATC	5 cut(s)	37, 190, 223, 329, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	128
BstV2I	GAAGAC	4 cut(s)	2, 110, 464, 548
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	577
CfoI	GCGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	431
CviJI	RGCY	5 cut(s)	100, 140, 375, 428, 536
CviKI_1	RGCY	5 cut(s)	100, 140, 375, 428, 536
CviQI	GTAC	1 cut(s)	431
DpnI	GATC	5 cut(s)	39, 192, 225, 331, 360
DpnII	GATC	5 cut(s)	37, 190, 223, 329, 358
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	122, 156
EcoRV	GATATC	1 cut(s)	85
FaiI	YATR	7 cut(s)	29, 59, 195, 222, 464, 470, 608
FbaI	TGATCA	1 cut(s)	223
FspBI	CTAG	3 cut(s)	356, 422, 533
GlaI	GCGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	272
HhaI	GCGC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	4 cut(s)	7, 337, 406, 477
HphI	GGTGA	2 cut(s)	185, 324
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	4 cut(s)	42, 403, 476, 625
Hpy188III	TCNNGA	7 cut(s)	323, 341, 356, 362, 422, 491, 508
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	6 cut(s)	92, 126, 233, 263, 581, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	446
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	37, 190, 223, 329, 358
LpnPI	CCDG	4 cut(s)	147, 326, 572, 620
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	3 cut(s)	356, 422, 533
MaeII	ACGT	1 cut(s)	446
MalI	GATC	5 cut(s)	39, 192, 225, 331, 360
MboI	GATC	5 cut(s)	37, 190, 223, 329, 358
MboII	GAAGA	8 cut(s)	47, 115, 188, 200, 469, 506, 553, 607
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	128, 243
MluCI	AATT	4 cut(s)	76, 452, 568, 598
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	61, 358, 391, 444, 611
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	3 cut(s)	110, 443, 521
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	5 cut(s)	37, 190, 223, 329, 358
NlaIV	GGNNCC	2 cut(s)	23, 55
NspV	TTCGAA	1 cut(s)	276
PaqCI	CACCTGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	337, 406, 477
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	23, 55
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	110, 443, 521
Sau3AI	GATC	5 cut(s)	37, 190, 223, 329, 358
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	128, 243
SfaNI	GCATC	1 cut(s)	568
SfuI	TTCGAA	1 cut(s)	276
Sse9I	AATT	4 cut(s)	76, 452, 568, 598
SsiI	CCGC	2 cut(s)	171, 560
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	3 cut(s)	356, 422, 533
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	3 cut(s)	276, 324, 490
TasI	AATT	4 cut(s)	76, 452, 568, 598
TfiI	GAWTC	3 cut(s)	337, 406, 477
Tru1I	TTAA	3 cut(s)	110, 443, 521
Tru9I	TTAA	3 cut(s)	110, 443, 521
TscAI	CASTG	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	180, 195, 201
TspRI	CASTG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	76, 598
XbaI	TCTAGA	2 cut(s)	355, 421
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	3 cut(s)	356, 422, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.