Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

20672545 .. 20673433

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0207300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGTCCATGAATTTGATCGGAAGCTTGAGCTGTTGCATGTGGCTAGTGATGGCCATGGCAACCGCAGCCCAAGATAACGCTCCAGTGCTCGACACCTCTGAGCAGGCTCTTCAATCCGGTGTAGACTACTACATCAAACCCGCCATCACCGACAACGGCGGCCGTTTCACTTTGATCAACCGAAATGACTCCTGTCCTTTGTATGTTGGTCAAGAAAACACCTCAGGCCCCAAGGGCTACCCGGTGACCTTTGCACCTTTCGCAGAGGGTGAGACGGTGGTAAGAGTGGGTAGGGATCAGAAGATCACATTCTCTGCATCCACAATCTGTGTGCAATCGACTGCATGGAAGGTGGGTGAGACTCAGTCCGAGACCCAAAGGAGATTGATTGTCACCGGAATTGATCAAAACGAAGGCCTACCAGGTCCGGCCGGAAACTACTTCAGGATTAATAAACAGGCCGATCATGATGGCGTCTACAACCTGCAGTGGTGCCCTACAGAAGTGTGCCCGACATGCAGGTTCATTTGCGGAGATGTGGGTGCTTTGGTTGAGAATGACAAGAGGCTGTTGGCCTTGGATGGTTCTGTGCTTCCTGTTGTCTTCGAGAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

206

Amino Acids

22.38

Weight (kDa)

4.91

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kunitz_legume	PF00197	30 - 205	8.3e-49	Trypsin and protease inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	495, 513
AccB1I	GGYRCC	1 cut(s)	495
AccI	GTMKAC	2 cut(s)	126, 480
AciI	CCGC	4 cut(s)	66, 144, 162, 534
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	3 cut(s)	54, 163, 432
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	2 cut(s)	27, 33
AluI	AGCT	2 cut(s)	27, 33
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	269, 356, 368
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	7 cut(s)	54, 163, 229, 418, 432, 462, 576
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	230, 428
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	5 cut(s)	142, 259, 284, 371, 388
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	226
BaeGI	GKGCMC	2 cut(s)	500, 515
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	4 cut(s)	46, 155, 467, 578
BceAI	ACGGC	2 cut(s)	150, 175
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	2 cut(s)	177, 406
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	269, 356, 368
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	488, 501
BfuAI	ACCTGC	2 cut(s)	495, 513
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	69, 163
BlsI	GCNGC	2 cut(s)	70, 164
Bme1390I	CCNGG	2 cut(s)	245, 426
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	230, 428
BmiI	GGNNCC	2 cut(s)	232, 497
BmrFI	CCNGG	2 cut(s)	245, 426
BmsI	GCATC	1 cut(s)	329
BoxI	GACNNNNGTC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	57, 234, 579
BsaWI	WCCGGW	2 cut(s)	119, 398
Bse1I	ACTGG	1 cut(s)	86
Bse21I	CCTNAGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	57, 234, 579
BseGI	GGATG	2 cut(s)	320, 589
BseMII	CTCAG	3 cut(s)	93, 240, 380
BseNI	ACTGG	1 cut(s)	86
BseSI	GKGCMC	2 cut(s)	500, 515
BseX3I	CGGCCG	2 cut(s)	163, 432
BseXI	GCAGC	1 cut(s)	80
Bsh1285I	CGRYCG	2 cut(s)	166, 435
BshFI	GGCC	7 cut(s)	56, 165, 231, 420, 434, 464, 578
BshNI	GGYRCC	1 cut(s)	495
BsiEI	CGRYCG	2 cut(s)	166, 435
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	5 cut(s)	120, 245, 399, 431, 435
BsmAI	GTCTC	3 cut(s)	269, 356, 368
BsmBI	CGTCTC	1 cut(s)	269
BsnI	GGCC	7 cut(s)	56, 165, 231, 420, 434, 464, 578
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	93, 500, 515
Bsp143I	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	4 cut(s)	66, 144, 162, 534
BspANI	GGCC	7 cut(s)	56, 165, 231, 420, 434, 464, 578
BspCNI	CTCAG	3 cut(s)	94, 239, 379
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	232, 497
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	2 cut(s)	495, 513
BspPI	GGATC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	57, 234, 579
BssMI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	3 cut(s)	57, 234, 579
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	102, 226, 366
BstDSI	CCRYGG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	320, 589
BstKTI	GATC	6 cut(s)	21, 180, 301, 309, 409, 469
BstMAI	GTCTC	3 cut(s)	269, 356, 368
BstMBI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
BstMCI	CGRYCG	2 cut(s)	166, 435
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 237, 263, 519
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	2 cut(s)	43, 522
BstPAI	GACNNNNGTC	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	243, 424
BstSFI	CTRYAG	2 cut(s)	488, 501
BstSLI	GKGCMC	2 cut(s)	500, 515
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	598
BstZI	CGGCCG	2 cut(s)	163, 432
Bsu36I	CCTNAGG	1 cut(s)	226
BsuRI	GGCC	7 cut(s)	56, 165, 231, 420, 434, 464, 578
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	320, 589
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	2 cut(s)	93, 497
BveI	ACCTGC	2 cut(s)	495, 513
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	1 cut(s)	469
Cfr13I	GGNCC	2 cut(s)	230, 428
CseI	GACGC	1 cut(s)	466
CsiI	ACCWGGT	1 cut(s)	424
CviAII	CATG	6 cut(s)	10, 40, 58, 348, 470, 519
DdeI	CTNAG	3 cut(s)	102, 226, 366
DpnI	GATC	6 cut(s)	20, 179, 300, 308, 408, 468
DpnII	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
EaeI	YGGCCR	3 cut(s)	54, 163, 432
EagI	CGGCCG	2 cut(s)	163, 432
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EclXI	CGGCCG	2 cut(s)	163, 432
Eco130I	CCWWGG	3 cut(s)	57, 234, 579
Eco147I	AGGCCT	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	428
Eco52I	CGGCCG	2 cut(s)	163, 432
Eco57I	CTGAAG	1 cut(s)	430
Eco81I	CCTNAGG	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	3 cut(s)	57, 234, 579
ErhI	CCWWGG	3 cut(s)	57, 234, 579
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
FaiI	YATR	7 cut(s)	11, 41, 59, 207, 349, 471, 520
FatI	CATG	6 cut(s)	9, 39, 57, 347, 469, 518
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	2 cut(s)	177, 406
FblI	GTMKAC	2 cut(s)	126, 480
Fnu4HI	GCNGC	2 cut(s)	69, 163
FokI	GGATG	2 cut(s)	307, 596
Fsp4HI	GCNGC	2 cut(s)	69, 163
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	69, 163
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	7 cut(s)	56, 165, 231, 420, 434, 464, 578
HapII	CCGG	5 cut(s)	120, 245, 399, 431, 435
HgaI	GACGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	2 cut(s)	191, 364
HpaII	CCGG	5 cut(s)	120, 245, 399, 431, 435
HphI	GGTGA	5 cut(s)	142, 259, 284, 371, 388
Hpy166II	GTNNAC	2 cut(s)	127, 481
Hpy188I	TCNGA	4 cut(s)	23, 103, 303, 373
Hpy188III	TCNNGA	4 cut(s)	215, 448, 470, 610
Hpy8I	GTNNAC	2 cut(s)	127, 481
HpyAV	CCTTC	3 cut(s)	346, 410, 607
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	7 cut(s)	39, 257, 320, 337, 347, 490, 522
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 237, 263, 519
HpyF3I	CTNAG	3 cut(s)	102, 226, 366
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
Ksp22I	TGATCA	2 cut(s)	177, 406
Kzo9I	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	329
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	247, 394
MalI	GATC	6 cut(s)	20, 179, 300, 308, 408, 468
MboI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
MboII	GAAGA	3 cut(s)	104, 316, 598
MhlI	GDGCHC	3 cut(s)	93, 500, 515
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	2 cut(s)	13, 402
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	185, 358
MnlI	CCTC	4 cut(s)	109, 235, 262, 561
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	2 cut(s)	453, 619
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	5 cut(s)	120, 245, 399, 431, 435
MspR9I	CCNGG	2 cut(s)	245, 426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	68, 237, 263, 519
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
NlaIII	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
NlaIV	GGNNCC	2 cut(s)	232, 497
NmuCI	GTSAC	2 cut(s)	247, 394
NspI	RCATGY	2 cut(s)	43, 522
PagI	TCATGA	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	70, 164
PleI	GAGTC	2 cut(s)	185, 358
PpsI	GAGTC	2 cut(s)	185, 358
PshAI	GACNNNNGTC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	232, 497
PspPI	GGNCC	2 cut(s)	230, 428
PstI	CTGCAG	1 cut(s)	492
PsyI	GACNNNGTC	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	453, 619
SatI	GCNGC	2 cut(s)	69, 163
Sau3AI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
Sau96I	GGNCC	2 cut(s)	230, 428
SchI	GAGTC	2 cut(s)	185, 358
ScrFI	CCNGG	2 cut(s)	245, 426
SduI	GDGCHC	3 cut(s)	93, 500, 515
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	488, 501
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	13, 402
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	4 cut(s)	66, 144, 162, 534
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	243, 424
StyI	CCWWGG	3 cut(s)	57, 234, 579
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	93, 341, 609
TasI	AATT	2 cut(s)	13, 402
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	453, 619
Tru9I	TTAA	2 cut(s)	453, 619
TscAI	CASTG	2 cut(s)	93, 497
TseFI	GTSAC	2 cut(s)	247, 394
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	2 cut(s)	247, 394
TspDTI	ATGAA	3 cut(s)	17, 26, 517
TspRI	CASTG	2 cut(s)	93, 497
Tth111I	GACNNNGTC	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	2 cut(s)	43, 522
XmiI	GTMKAC	2 cut(s)	126, 480
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.