Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

19052495 .. 19053520

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATGCGGAGAACTGCCTCTTCTTGTTTTTGCAACAACACTAGAGGTATGCCTCGTCTTCAGTCTACTCTTGTTTCCTTCAACCATTACTCCTCTGCACTTTTTCATTCCCAAGCTTCAAAGCCTAGGAACACCCAGATTGTAAGAGACCCACCCAAAGTCACTAGTCTCCAGGATGGTTTAAGCTTGTTCAATACTATGCTTCAAATGCGTCCTCTGCCTTCTATTGTCTGTTTCAATAAAATCTTGGGTCAAATTGCTCAATTGAAACATCATTCGGCACCCATCTCTTTGTTTCACCAAATGTGTCTGCTGCGAGTTGTTCCTGATGTTTATACTTTGAACATCATGATAAACTGCTTTTGTCATTTGAACCAAATGGGATTCAGTTTGTCTGTGTTGGGAAAGTTCTTCAAATTTGGTTATGAACCAGATGCTACCACCCTCAACACTCTGATCAAGGGTTTTTTCCTTGAGAGTAAAGTCTCTGAGGCAGCAGCACTTTTCGGCAAAATGCTGCTCCAAGGTTGTAAGCCGAATGCGTTTACTTTTGGAACACTAATAAAGGGCTATTGCATGATGGGAAATAATACTGCAGCTATTCAATTGCTTAGAAAGATGGAACAACAATCTCGAGATTGTAAGCCTAATGTGGTTGTCTATAATATCATCATTGATAGTCTTTGTAAGGATACACTAGTTCCCGATGCATTTAAGCTCTTCTCAGAAATGATTAGTAGGGGTATTGCCCCTGACGTCATTACTTATACCTCTTTGATTCATGGAGTTTCCAAATTAGGCCAGTGGAAAGAAGCTACAAGATTGTTGAATGAGATGGTCAGTAAAGATATCTTCCCGAATTTAGTAACCTTCACTATCCTGGTCGATACACTTTGTAAGGAGGGGATGGTTGTGGAAGCACAAAGTGTGCTTGAAATGATGATTCAAAGAGGTATCAAACCTGATAACGTCACCTACAGGACTTATGGATGGCTACTGTCTACGAGGAGAAATGGAGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

341

Amino Acids

38.37

Weight (kDa)

9.3

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 123	6.5e-09	PPR repeat family
PPR_1	PF12854	141 - 172	1.7e-06	PPR repeat
PPR_2	PF13041	144 - 192	6.3e-13	PPR repeat family
PPR_1	PF12854	176 - 208	4e-11	PPR repeat
PPR_3	PF13812	183 - 226	4.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	186 - 230	1.2e-09	PPR repeat family
PPR_1	PF12854	212 - 244	2.2e-12	PPR repeat
PPR_2	PF13041	216 - 264	4.5e-18	PPR repeat family
PPR	PF01535	219 - 249	1e-06	PPR repeat
PPR_long	PF17177	233 - 324	8.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	239 - 298	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	247 - 280	1.1e-09	PPR repeat
PPR_2	PF13041	252 - 300	1.1e-15	PPR repeat family
PPR	PF01535	254 - 284	7.3e-07	PPR repeat
PPR_3	PF13812	274 - 326	6.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	282 - 314	7.5e-10	PPR repeat
PPR	PF01535	289 - 319	4.3e-06	PPR repeat
PPR_2	PF13041	295 - 328	6.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	280
AccI	GTMKAC	2 cut(s)	65, 1001
AciI	CCGC	1 cut(s)	7
AcsI	RAATTY	2 cut(s)	416, 859
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	756
AdeI	CACNNNGTG	1 cut(s)	926
AhlI	ACTAGT	2 cut(s)	164, 697
AjnI	CCWGG	2 cut(s)	171, 879
AluBI	AGCT	6 cut(s)	116, 186, 599, 718, 815, 1023
AluI	AGCT	6 cut(s)	116, 186, 599, 718, 815, 1023
Alw26I	GTCTC	3 cut(s)	141, 173, 490
Ama87I	CYCGRG	1 cut(s)	633
AoxI	GGCC	1 cut(s)	799
ApeKI	GCWGC	5 cut(s)	313, 494, 497, 517, 596
ApoI	RAATTY	2 cut(s)	416, 859
AspA2I	CCTAGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	290, 964
AvaI	CYCGRG	1 cut(s)	633
AvrII	CCTAGG	1 cut(s)	125
BaeI	ACNNNNGTAYC	2 cut(s)	684, 717
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	5 cut(s)	300, 504, 506, 509, 608
BccI	CCATC	7 cut(s)	170, 293, 574, 613, 829, 901, 984
BciT130I	CCWGG	2 cut(s)	173, 881
BciVI	GTATCC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	3 cut(s)	141, 173, 490
BcuI	ACTAGT	2 cut(s)	164, 697
BfaI	CTAG	4 cut(s)	42, 126, 165, 698
BfmI	CTRYAG	2 cut(s)	594, 976
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	5 cut(s)	314, 495, 498, 518, 597
BlnI	CCTAGG	1 cut(s)	125
BlsI	GCNGC	5 cut(s)	315, 496, 499, 519, 598
Bme1390I	CCNGG	2 cut(s)	173, 881
BmeT110I	CYCGRG	1 cut(s)	633
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	173, 881
BmsI	GCATC	2 cut(s)	424, 697
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	125, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	1 cut(s)	802
BseBI	CCWGG	2 cut(s)	173, 881
BseDI	CCNNGG	2 cut(s)	125, 523
BseGI	GGATG	3 cut(s)	181, 912, 995
BseMII	CTCAG	2 cut(s)	480, 738
BseNI	ACTGG	1 cut(s)	802
BseRI	GAGGAG	2 cut(s)	82, 1021
BseXI	GCAGC	5 cut(s)	300, 504, 506, 509, 608
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	801
BshNI	GGYRCC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	633
BsmAI	GTCTC	3 cut(s)	141, 173, 490
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	801
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	633
Bsp143I	GATC	1 cut(s)	456
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	801
BspCNI	CTCAG	2 cut(s)	481, 737
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	802
BssECI	CCNNGG	2 cut(s)	125, 523
BssMI	GATC	1 cut(s)	456
BssNI	GRCGYC	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	125, 523
Bst2UI	CCWGG	2 cut(s)	173, 881
Bst4CI	ACNGT	1 cut(s)	999
Bst6I	CTCTTC	2 cut(s)	25, 725
BstACI	GRCGYC	1 cut(s)	756
BstDEI	CTNAG	3 cut(s)	489, 611, 724
BstF5I	GGATG	3 cut(s)	181, 912, 995
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	3 cut(s)	141, 173, 490
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 217
BstNI	CCWGG	2 cut(s)	173, 881
BstSCI	CCNGG	2 cut(s)	171, 879
BstSFI	CTRYAG	2 cut(s)	594, 976
BstV1I	GCAGC	5 cut(s)	300, 504, 506, 509, 608
BstV2I	GAAGAC	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	801
BtsCI	GGATG	3 cut(s)	181, 912, 995
BtsIMutI	CAGTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	348
CseI	GACGC	1 cut(s)	200
CviAII	CATG	3 cut(s)	349, 577, 782
DdeI	CTNAG	3 cut(s)	489, 611, 724
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
DraIII	CACNNNGTG	1 cut(s)	926
Eam1104I	CTCTTC	2 cut(s)	25, 725
EarI	CTCTTC	2 cut(s)	25, 725
Eco130I	CCWWGG	2 cut(s)	125, 523
Eco31I	GGTCTC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	171, 879
EcoRV	GATATC	1 cut(s)	850
EcoT14I	CCWWGG	2 cut(s)	125, 523
EcoT22I	ATGCAT	1 cut(s)	712
ErhI	CCWWGG	2 cut(s)	125, 523
FaeI	CATG	3 cut(s)	352, 580, 785
FatI	CATG	3 cut(s)	348, 576, 781
FbaI	TGATCA	1 cut(s)	456
FblI	GTMKAC	2 cut(s)	65, 1001
Fnu4HI	GCNGC	5 cut(s)	314, 495, 498, 518, 597
FokI	GGATG	3 cut(s)	188, 919, 1002
Fsp4HI	GCNGC	5 cut(s)	314, 495, 498, 518, 597
FspBI	CTAG	4 cut(s)	42, 126, 165, 698
GluI	GCNGC	5 cut(s)	314, 495, 498, 518, 597
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	801
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	3 cut(s)	352, 580, 785
HindIII	AAGCTT	2 cut(s)	114, 184
HinfI	GANTC	3 cut(s)	384, 778, 943
HphI	GGTGA	2 cut(s)	290, 964
Hpy166II	GTNNAC	3 cut(s)	66, 546, 1002
Hpy188I	TCNGA	3 cut(s)	456, 490, 727
Hpy188III	TCNNGA	6 cut(s)	326, 349, 633, 635, 704, 856
Hpy8I	GTNNAC	3 cut(s)	66, 546, 1002
HpyAV	CCTTC	3 cut(s)	88, 231, 880
HpyCH4III	ACNGT	1 cut(s)	999
HpyCH4IV	ACGT	2 cut(s)	756, 969
HpyCH4V	TGCA	5 cut(s)	33, 98, 576, 596, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 217
HpyF3I	CTNAG	3 cut(s)	489, 611, 724
HpySE526I	ACGT	2 cut(s)	756, 969
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	3 cut(s)	352, 580, 785
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	456
LguI	GCTCTTC	1 cut(s)	725
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	5 cut(s)	300, 504, 506, 509, 608
LweI	GCATC	2 cut(s)	424, 697
MaeI	CTAG	4 cut(s)	42, 126, 165, 698
MaeII	ACGT	2 cut(s)	756, 969
MaeIII	GTNAC	3 cut(s)	160, 865, 970
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	5 cut(s)	12, 50, 403, 712, 844
MfeI	CAATTG	2 cut(s)	263, 605
MluCI	AATT	6 cut(s)	255, 263, 416, 605, 794, 859
Mph1103I	ATGCAT	1 cut(s)	712
MseI	TTAA	2 cut(s)	182, 714
MspR9I	CCNGG	2 cut(s)	173, 881
MunI	CAATTG	2 cut(s)	263, 605
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	2 cut(s)	173, 881
MwoI	GCNNNNNNNGC	2 cut(s)	208, 217
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	3 cut(s)	352, 580, 785
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	160, 970
NsiI	ATGCAT	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	633
PagI	TCATGA	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	725
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	3 cut(s)	384, 778, 943
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	5 cut(s)	315, 496, 499, 519, 598
Psp6I	CCWGG	2 cut(s)	171, 879
PspGI	CCWGG	2 cut(s)	171, 879
PspN4I	GGNNCC	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	598
SapI	GCTCTTC	1 cut(s)	725
SaqAI	TTAA	2 cut(s)	182, 714
SatI	GCNGC	5 cut(s)	314, 495, 498, 518, 597
Sau3AI	GATC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	173, 881
SfaNI	GCATC	2 cut(s)	424, 697
SfcI	CTRYAG	2 cut(s)	594, 976
Sfr274I	CTCGAG	1 cut(s)	633
SlaI	CTCGAG	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	473, 633
SmoI	CTYRAG	2 cut(s)	473, 633
SpeI	ACTAGT	2 cut(s)	164, 697
Sse9I	AATT	6 cut(s)	255, 263, 416, 605, 794, 859
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	4 cut(s)	42, 126, 165, 698
StyD4I	CCNGG	2 cut(s)	171, 879
StyI	CCWWGG	2 cut(s)	125, 523
TaaI	ACNGT	1 cut(s)	999
TaiI	ACGT	2 cut(s)	759, 972
TaqI	TCGA	2 cut(s)	634, 885
TasI	AATT	6 cut(s)	255, 263, 416, 605, 794, 859
TfiI	GAWTC	3 cut(s)	384, 778, 943
Tru1I	TTAA	2 cut(s)	182, 714
Tru9I	TTAA	2 cut(s)	182, 714
TscAI	CASTG	1 cut(s)	809
TseFI	GTSAC	2 cut(s)	160, 970
TseI	GCWGC	5 cut(s)	313, 494, 497, 517, 596
Tsp45I	GTSAC	2 cut(s)	160, 970
TspDTI	ATGAA	3 cut(s)	95, 441, 770
TspRI	CASTG	1 cut(s)	809
XapI	RAATTY	2 cut(s)	416, 859
XhoI	CTCGAG	1 cut(s)	633
XmaJI	CCTAGG	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	65, 1001
XspI	CTAG	4 cut(s)	42, 126, 165, 698
ZraI	GACGTC	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.