Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

16979175 .. 16979648

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAAAGCTAAGTAGTGTTAATGTTGGAACAAGTCAGCAATTCAAAATAATGGAGACTGTGGCAGGTGGTATACAAAATGTTAGATGTATTGCCAGAGATTTGAGAAACTTTGAAAGAGATTCGAGGGAAGAAGTGAAGGGACATGATGAAACTATGTTACTTGAGTACTTAGAGTCAGAAAAGGAAAAGAAGCCATCTTTTTATTTTGAAGTTGACCGAGATGAAGAAAATAGGATGACTCGTTGCTTTTGGGCTGATCCTACCTCAAAAAAAGCATATTATTTCTTTAACGATGTTGTTGTGTTTGATACCATGTACAACACAAACAAATATCGCATGATCTTTGCTCCAATCACAGGCGTCAACCATCATGGCCGGACAATTGTATTTGGTTGTGGACTTTTAAGTGATGAGAAAACCATCATGGTCTTTTATTTGGTTACTGGAACAATGACTGAAAGCTATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

157

Amino Acids

18.33

Weight (kDa)

5.45

Isoelectric Point (pI)

24.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	100 - 142	1.3e-10	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	376
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	2 cut(s)	170, 320
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	46, 116, 212
AluBI	AGCT	2 cut(s)	10, 465
AluI	AGCT	2 cut(s)	10, 465
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	376
BccI	CCATC	3 cut(s)	205, 378, 431
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	451
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	259, 342
BspANI	GGCC	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	451
BssMI	GATC	2 cut(s)	259, 342
BssNAI	GTATAC	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	363
Bst1107I	GTATAC	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	363
BstAUI	TGTACA	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	11, 172
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	262, 345
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	259, 342
BstZ17I	GTATAC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	56
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	169, 319
CviAII	CATG	5 cut(s)	146, 316, 340, 374, 427
CviJI	RGCY	5 cut(s)	10, 196, 257, 378, 465
CviKI_1	RGCY	5 cut(s)	10, 196, 257, 378, 465
CviQI	GTAC	2 cut(s)	169, 319
DdeI	CTNAG	2 cut(s)	11, 172
DpnI	GATC	2 cut(s)	261, 344
DpnII	GATC	2 cut(s)	259, 342
EaeI	YGGCCR	1 cut(s)	376
FaeI	CATG	5 cut(s)	149, 319, 343, 377, 430
FaiI	YATR	9 cut(s)	74, 147, 158, 280, 317, 341, 375, 428, 468
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	5 cut(s)	145, 315, 339, 373, 426
FblI	GTMKAC	1 cut(s)	73
FokI	GGATG	1 cut(s)	250
FspBI	CTAG	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	379
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	149, 319, 343, 377, 430
HincII	GTYRAC	2 cut(s)	217, 367
HindII	GTYRAC	2 cut(s)	217, 367
HinfI	GANTC	3 cut(s)	122, 176, 241
HpaII	CCGG	1 cut(s)	379
Hpy166II	GTNNAC	4 cut(s)	74, 217, 367, 401
Hpy188I	TCNGA	1 cut(s)	181
Hpy8I	GTNNAC	4 cut(s)	74, 217, 367, 401
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	11, 172
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	5 cut(s)	149, 319, 343, 377, 430
Kzo9I	GATC	2 cut(s)	259, 342
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	51, 109, 345, 392, 432
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	159, 442
MalI	GATC	2 cut(s)	261, 344
MboI	GATC	2 cut(s)	259, 342
MboII	GAAGA	2 cut(s)	143, 239
MfeI	CAATTG	1 cut(s)	384
MluCI	AATT	2 cut(s)	41, 384
MlyI	GAGTC	2 cut(s)	185, 235
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	2 cut(s)	120, 277
MseI	TTAA	3 cut(s)	21, 291, 407
MspI	CCGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	384
NdeII	GATC	2 cut(s)	259, 342
NlaIII	CATG	5 cut(s)	149, 319, 343, 377, 430
PaqCI	CACCTGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	122
PleI	GAGTC	2 cut(s)	184, 235
PpsI	GAGTC	2 cut(s)	184, 235
RsaI	GTAC	2 cut(s)	170, 320
RsaNI	GTAC	2 cut(s)	169, 319
SaqAI	TTAA	3 cut(s)	21, 291, 407
Sau3AI	GATC	2 cut(s)	259, 342
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	185, 235
SetI	ASST	4 cut(s)	12, 70, 269, 467
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	41, 384
SspMI	CTAG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	125
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	41, 384
TatI	WGTACW	2 cut(s)	168, 318
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	3 cut(s)	21, 291, 407
Tru9I	TTAA	3 cut(s)	21, 291, 407
TspDTI	ATGAA	2 cut(s)	165, 240
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	1 cut(s)	472
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.