Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

11403916 .. 11406153

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0070000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATTCCTAAGAACTCCGTCCATGGAGCCTTTGATTCCAGTGTCCAGGTACTACTCTATTTCTTGACTGACCTAAATCTCTTCGTCGGAAACCTTCCCTTCACTGTTGATAGTGCTCAGCTAGTTGAGCTCTTCAAAGGTGCTGGGAATGTTGAGATGGTCGAGGTTATGCATGACAAGACTACTGGGAGAAGCAGAGGATTTGGGTTTGTGTCTCACCATTTGGGATCACAAAATTTCGCGTTTGGTGGATTGAAAGATTTCAGTTGTGGTTTTGAAAGCGCGGAGCTTTCGGTGATTCTGTGCTATGATGAATTTATGAGAAAACGTAACAAGGAATGGAGAGACGAGGACCGTGCTACTGGTGTTGTTTCCAAGTCCAAGCATGTGGCTGGTCTTAAGATTCCAAATGTTGTGTTGGGTGACTTTGTGATTTCTGTTGAGATGGCGGCGAGGGAAGCAGAGCAAAGAGGCCACACACTTCTTGATGAGATGCGCCTTCTCATGGTTTTCAGTGAAGAGATAATTTCTCATGGAGGAATAGTTGTTGGCTATTATATATGTGAACTCACAGCCATAACAAGTACAGAACTTTATAACTGGAAAGAGGAAGAAAAACTCTGGGTTTTAATGGACCATAAGTTTCCTAATGTCTTTTTCCGTGCTCCACCATCTAGAACCTCCGATTATCCCGGTGATGTTTGTGTAGGAAAGCATTTGGCTGAGCACTGTAGAGCTGAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCAGAGATTTCTATAGTTGCATGTGACATTCCTGAAGTGATTGGAACTGCCTTTGCATTGAACATGCTCTTCAATATACATAATACATATATGGATTGGTGTTCTCCTGACAGGACTCAGTACATTGATGCTTCTTGCATTACAACAATATGGGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

312

Amino Acids

35.2

Weight (kDa)

5.38

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	27 - 72	4.7e-12	RNA recognition motif
YbeY	PF02130	93 - 170	1.1e-11	Endoribonuclease YbeY
Nramp	PF01566	236 - 287	1.8e-13	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccII	CGCG	2 cut(s)	242, 284
AciI	CCGC	2 cut(s)	284, 449
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	235, 314
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	3 cut(s)	51, 586, 899
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	136, 256, 278, 838, 850
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	121, 130, 289, 737
AluI	AGCT	4 cut(s)	121, 130, 289, 737
Alw21I	GWGCWC	4 cut(s)	118, 132, 667, 729
Alw26I	GTCTC	2 cut(s)	219, 339
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	472
ApoI	RAATTY	2 cut(s)	235, 314
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	284, 498
AspS9I	GGNCC	2 cut(s)	352, 634
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	4 cut(s)	209, 307, 434, 707
AvaII	GGWCC	2 cut(s)	352, 634
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	4 cut(s)	118, 132, 667, 729
BccI	CCATC	3 cut(s)	151, 439, 679
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	2 cut(s)	219, 339
BfaI	CTAG	2 cut(s)	122, 675
BfmI	CTRYAG	2 cut(s)	730, 789
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	1 cut(s)	450
BlpI	GCTNAGC	2 cut(s)	117, 723
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	2 cut(s)	47, 693
Bme18I	GGWCC	2 cut(s)	352, 634
BmgT120I	GGNCC	2 cut(s)	352, 634
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	47, 693
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	483, 895
BmuI	ACTGGG	1 cut(s)	195
Bpu1102I	GCTNAGC	2 cut(s)	117, 723
BpuMI	CCSGG	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	4 cut(s)	39, 190, 367, 605
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	762
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	131, 714, 908
BseNI	ACTGG	4 cut(s)	39, 190, 367, 605
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	2 cut(s)	242, 284
BshFI	GGCC	1 cut(s)	474
BsiHKAI	GWGCWC	4 cut(s)	118, 132, 667, 729
BsiSI	CCGG	1 cut(s)	693
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	2 cut(s)	219, 339
BsmBI	CGTCTC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	474
Bsp1286I	GDGCHC	4 cut(s)	118, 132, 667, 729
Bsp143I	GATC	1 cut(s)	227
Bsp1720I	GCTNAGC	2 cut(s)	117, 723
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	2 cut(s)	284, 449
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	3 cut(s)	130, 715, 907
BspFNI	CGCG	2 cut(s)	242, 284
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	2 cut(s)	137, 851
BspTI	CTTAAG	1 cut(s)	398
BsrI	ACTGG	4 cut(s)	39, 190, 367, 605
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	3 cut(s)	106, 356, 731
Bst6I	CTCTTC	4 cut(s)	86, 137, 513, 851
BstAFI	CTTAAG	1 cut(s)	398
BstDEI	CTNAG	5 cut(s)	9, 117, 723, 747, 894
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	762
BstFNI	CGCG	2 cut(s)	242, 284
BstHHI	GCGC	2 cut(s)	284, 498
BstKTI	GATC	1 cut(s)	230
BstMAI	GTCTC	2 cut(s)	219, 339
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 458
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	3 cut(s)	389, 801, 844
BstSCI	CCNGG	2 cut(s)	45, 691
BstSFI	CTRYAG	2 cut(s)	730, 789
BstUI	CGCG	2 cut(s)	242, 284
BstXI	CCANNNNNNTGG	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	762
BtsIMutI	CAGTG	4 cut(s)	46, 102, 520, 727
CfoI	GCGC	2 cut(s)	284, 498
Cfr13I	GGNCC	2 cut(s)	352, 634
Csp6I	GTAC	3 cut(s)	50, 585, 898
CviAII	CATG	7 cut(s)	23, 173, 386, 505, 533, 798, 841
CviQI	GTAC	3 cut(s)	50, 585, 898
DdeI	CTNAG	5 cut(s)	9, 117, 723, 747, 894
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Eam1104I	CTCTTC	4 cut(s)	86, 137, 513, 851
EarI	CTCTTC	4 cut(s)	86, 137, 513, 851
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	352, 634
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	7 cut(s)	26, 176, 389, 508, 536, 801, 844
FatI	CATG	7 cut(s)	22, 172, 385, 504, 532, 797, 840
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	1 cut(s)	749
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	2 cut(s)	122, 675
GlaI	GCGC	2 cut(s)	283, 497
GluI	GCNGC	1 cut(s)	450
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	693
HhaI	GCGC	2 cut(s)	284, 498
Hin1II	CATG	7 cut(s)	26, 176, 389, 508, 536, 801, 844
Hin6I	GCGC	2 cut(s)	282, 496
HinP1I	GCGC	2 cut(s)	282, 496
HinfI	GANTC	5 cut(s)	4, 35, 298, 403, 892
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	4 cut(s)	209, 307, 434, 707
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	2 cut(s)	89, 685
Hpy188III	TCNNGA	5 cut(s)	64, 485, 675, 809, 884
Hpy8I	GTNNAC	1 cut(s)	566
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	104, 109, 509
HpyCH4III	ACNGT	3 cut(s)	106, 356, 731
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	5 cut(s)	172, 779, 797, 833, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 458
HpyF3I	CTNAG	5 cut(s)	9, 117, 723, 747, 894
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	7 cut(s)	26, 176, 389, 508, 536, 801, 844
HspAI	GCGC	2 cut(s)	282, 496
Kzo9I	GATC	1 cut(s)	227
LguI	GCTCTTC	2 cut(s)	137, 851
LmnI	GCTCC	3 cut(s)	26, 286, 670
LweI	GCATC	2 cut(s)	483, 895
MaeI	CTAG	2 cut(s)	122, 675
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	4 cut(s)	329, 422, 800, 932
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	5 cut(s)	73, 124, 530, 623, 838
MhlI	GDGCHC	4 cut(s)	118, 132, 667, 729
MluCI	AATT	3 cut(s)	235, 314, 525
MlyI	GAGTC	1 cut(s)	886
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	8 cut(s)	157, 191, 343, 447, 464, 530, 601, 691
Mph1103I	ATGCAT	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	2 cut(s)	399, 629
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	2 cut(s)	47, 693
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	2 cut(s)	242, 284
MwoI	GCNNNNNNNGC	2 cut(s)	127, 458
NciI	CCSGG	1 cut(s)	693
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	7 cut(s)	26, 176, 389, 508, 536, 801, 844
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	422, 800
NsiI	ATGCAT	1 cut(s)	174
NspI	RCATGY	3 cut(s)	389, 801, 844
PciSI	GCTCTTC	2 cut(s)	137, 851
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	4 cut(s)	4, 35, 298, 403
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	352, 634
RsaI	GTAC	3 cut(s)	51, 586, 899
RsaNI	GTAC	3 cut(s)	50, 585, 898
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	2 cut(s)	137, 851
SaqAI	TTAA	2 cut(s)	399, 629
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	352, 634
SchI	GAGTC	1 cut(s)	886
ScrFI	CCNGG	2 cut(s)	47, 693
SduI	GDGCHC	4 cut(s)	118, 132, 667, 729
SfaNI	GCATC	2 cut(s)	483, 895
SfcI	CTRYAG	2 cut(s)	730, 789
SinI	GGWCC	2 cut(s)	352, 634
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	235, 314, 525
SsiI	CCGC	2 cut(s)	284, 449
SspMI	CTAG	2 cut(s)	122, 675
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	45, 691
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	3 cut(s)	106, 356, 731
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	235, 314, 525
TatI	WGTACW	2 cut(s)	584, 897
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	4 cut(s)	4, 35, 298, 403
Tru1I	TTAA	2 cut(s)	399, 629
Tru9I	TTAA	2 cut(s)	399, 629
TscAI	CASTG	4 cut(s)	46, 109, 520, 734
TseFI	GTSAC	2 cut(s)	422, 800
Tsp45I	GTSAC	2 cut(s)	422, 800
TspDTI	ATGAA	2 cut(s)	327, 751
TspGWI	ACGGA	2 cut(s)	7, 650
TspRI	CASTG	4 cut(s)	46, 109, 520, 734
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	352, 634
XapI	RAATTY	2 cut(s)	235, 314
XbaI	TCTAGA	1 cut(s)	674
XceI	RCATGY	3 cut(s)	389, 801, 844
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	122, 675
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.