Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 587 |
| AccB1I | GGYRCC | 3 cut(s) | 248, 587, 1223 |
| AccII | CGCG | 1 cut(s) | 71 |
| AciI | CCGC | 5 cut(s) | 258, 261, 315, 623, 855 |
| AclWI | GGATC | 6 cut(s) | 43, 134, 147, 182, 358, 621 |
| AcoI | YGGCCR | 1 cut(s) | 262 |
| AcuI | CTGAAG | 1 cut(s) | 107 |
| AfaI | GTAC | 3 cut(s) | 41, 589, 974 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 131, 314, 844 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AgeI | ACCGGT | 1 cut(s) | 590 |
| AgsI | TTSAA | 3 cut(s) | 483, 943, 1039 |
| AjnI | CCWGG | 3 cut(s) | 493, 715, 913 |
| AluBI | AGCT | 4 cut(s) | 14, 418, 725, 1093 |
| AluI | AGCT | 4 cut(s) | 14, 418, 725, 1093 |
| Alw21I | GWGCWC | 1 cut(s) | 16 |
| Alw26I | GTCTC | 4 cut(s) | 426, 526, 1118, 1188 |
| AlwI | GGATC | 6 cut(s) | 43, 134, 147, 182, 358, 621 |
| AoxI | GGCC | 5 cut(s) | 162, 262, 334, 980, 1056 |
| ApeKI | GCWGC | 5 cut(s) | 107, 324, 327, 562, 1072 |
| AseI | ATTAAT | 1 cut(s) | 603 |
| AsiGI | ACCGGT | 1 cut(s) | 590 |
| Asp718I | GGTACC | 1 cut(s) | 587 |
| AspLEI | GCGC | 2 cut(s) | 736, 1244 |
| AspS9I | GGNCC | 3 cut(s) | 163, 539, 1234 |
| AsuHPI | GGTGA | 4 cut(s) | 605, 647, 731, 818 |
| AvaII | GGWCC | 2 cut(s) | 539, 1234 |
| BaeGI | GKGCMC | 1 cut(s) | 1228 |
| BamHI | GGATCC | 1 cut(s) | 139 |
| BanI | GGYRCC | 3 cut(s) | 248, 587, 1223 |
| BanII | GRGCYC | 1 cut(s) | 16 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 80, 112 |
| Bbv12I | GWGCWC | 1 cut(s) | 16 |
| BbvI | GCAGC | 5 cut(s) | 119, 336, 339, 574, 1059 |
| BccI | CCATC | 5 cut(s) | 119, 129, 375, 752, 878 |
| BceAI | ACGGC | 1 cut(s) | 321 |
| BciT130I | CCWGG | 3 cut(s) | 495, 717, 915 |
| BclI | TGATCA | 1 cut(s) | 934 |
| BcoDI | GTCTC | 4 cut(s) | 426, 526, 1118, 1188 |
| BfaI | CTAG | 1 cut(s) | 1109 |
| BfoI | RGCGCY | 1 cut(s) | 737 |
| BglII | AGATCT | 1 cut(s) | 391 |
| BisI | GCNGC | 8 cut(s) | 108, 259, 262, 325, 328, 563, 856, 1073 |
| BlsI | GCNGC | 8 cut(s) | 109, 260, 263, 326, 329, 564, 857, 1074 |
| BmcAI | AGTACT | 1 cut(s) | 41 |
| Bme1390I | CCNGG | 3 cut(s) | 495, 717, 915 |
| Bme18I | GGWCC | 2 cut(s) | 539, 1234 |
| BmgT120I | GGNCC | 3 cut(s) | 163, 539, 1234 |
| BmiI | GGNNCC | 5 cut(s) | 141, 250, 589, 1225, 1235 |
| BmrFI | CCNGG | 3 cut(s) | 495, 717, 915 |
| BmsI | GCATC | 2 cut(s) | 217, 574 |
| BpmI | CTGGAG | 1 cut(s) | 936 |
| BpuEI | CTTGAG | 2 cut(s) | 218, 1170 |
| BsaJI | CCNNGG | 5 cut(s) | 52, 502, 715, 1059, 1076 |
| BsaWI | WCCGGW | 1 cut(s) | 590 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 345, 375, 744, 774, 909, 939 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 131, 314, 844 |
| Bse118I | RCCGGY | 1 cut(s) | 590 |
| Bse1I | ACTGG | 1 cut(s) | 286 |
| Bse3DI | GCAATG | 2 cut(s) | 580, 632 |
| BseBI | CCWGG | 3 cut(s) | 495, 717, 915 |
| BseDI | CCNNGG | 5 cut(s) | 52, 502, 715, 1059, 1076 |
| BseGI | GGATG | 9 cut(s) | 85, 121, 232, 364, 367, 407, 565, 910, 1210 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 131, 314, 844 |
| BseMI | GCAATG | 2 cut(s) | 580, 632 |
| BseMII | CTCAG | 1 cut(s) | 173 |
| BseNI | ACTGG | 1 cut(s) | 286 |
| BseRI | GAGGAG | 3 cut(s) | 887, 1093, 1136 |
| BseSI | GKGCMC | 1 cut(s) | 1228 |
| BseXI | GCAGC | 5 cut(s) | 119, 336, 339, 574, 1059 |
| BseYI | CCCAGC | 1 cut(s) | 1089 |
| Bsh1236I | CGCG | 1 cut(s) | 71 |
| BshFI | GGCC | 5 cut(s) | 164, 264, 336, 982, 1058 |
| BshNI | GGYRCC | 3 cut(s) | 248, 587, 1223 |
| BshTI | ACCGGT | 1 cut(s) | 590 |
| BsiHKAI | GWGCWC | 1 cut(s) | 16 |
| BsiSI | CCGG | 2 cut(s) | 252, 591 |
| BslFI | GGGAC | 2 cut(s) | 418, 820 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 131, 314, 844 |
| BsmAI | GTCTC | 4 cut(s) | 426, 526, 1118, 1188 |
| BsmFI | GGGAC | 2 cut(s) | 418, 820 |
| BsmI | GAATGC | 1 cut(s) | 693 |
| BsnI | GGCC | 5 cut(s) | 164, 264, 336, 982, 1058 |
| Bsp1286I | GDGCHC | 2 cut(s) | 16, 1228 |
| Bsp143I | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| BspACI | CCGC | 5 cut(s) | 258, 261, 315, 623, 855 |
| BspANI | GGCC | 5 cut(s) | 164, 264, 336, 982, 1058 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspFNI | CGCG | 1 cut(s) | 71 |
| BspLI | GGNNCC | 5 cut(s) | 141, 250, 589, 1225, 1235 |
| BspPI | GGATC | 6 cut(s) | 43, 134, 147, 182, 358, 621 |
| BspT107I | GGYRCC | 3 cut(s) | 248, 587, 1223 |
| BsrDI | GCAATG | 2 cut(s) | 580, 632 |
| BsrFI | RCCGGY | 1 cut(s) | 590 |
| BsrI | ACTGG | 1 cut(s) | 286 |
| BssAI | RCCGGY | 1 cut(s) | 590 |
| BssECI | CCNNGG | 5 cut(s) | 52, 502, 715, 1059, 1076 |
| BssMI | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| BssT1I | CCWWGG | 3 cut(s) | 52, 502, 1059 |
| Bst2UI | CCWGG | 3 cut(s) | 495, 717, 915 |
| Bst4CI | ACNGT | 3 cut(s) | 834, 1018, 1050 |
| Bst6I | CTCTTC | 1 cut(s) | 1146 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 579 |
| BstC8I | GCNNGC | 2 cut(s) | 890, 965 |
| BstDEI | CTNAG | 3 cut(s) | 63, 182, 789 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 842 |
| BstF5I | GGATG | 9 cut(s) | 85, 121, 232, 364, 367, 407, 565, 910, 1210 |
| BstFNI | CGCG | 1 cut(s) | 71 |
| BstH2I | RGCGCY | 1 cut(s) | 737 |
| BstHHI | GCGC | 2 cut(s) | 736, 1244 |
| BstKTI | GATC | 8 cut(s) | 51, 85, 142, 190, 366, 394, 616, 937 |
| BstMAI | GTCTC | 4 cut(s) | 426, 526, 1118, 1188 |
| BstMBI | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 321, 333, 562, 579, 731, 1064 |
| BstNI | CCWGG | 3 cut(s) | 495, 717, 915 |
| BstNSI | RCATGY | 1 cut(s) | 967 |
| BstSCI | CCNGG | 3 cut(s) | 493, 715, 913 |
| BstSLI | GKGCMC | 1 cut(s) | 1228 |
| BstUI | CGCG | 1 cut(s) | 71 |
| BstV1I | GCAGC | 5 cut(s) | 119, 336, 339, 574, 1059 |
| BstX2I | RGATCY | 3 cut(s) | 48, 139, 391 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 509 |
| BstYI | RGATCY | 3 cut(s) | 48, 139, 391 |
| BsuRI | GGCC | 5 cut(s) | 164, 264, 336, 982, 1058 |
| BtsCI | GGATG | 9 cut(s) | 85, 121, 232, 364, 367, 407, 565, 910, 1210 |
| BtsI | GCAGTG | 2 cut(s) | 1074, 1130 |
| BtsIMutI | CAGTG | 5 cut(s) | 830, 1014, 1055, 1074, 1130 |
| Cac8I | GCNNGC | 2 cut(s) | 890, 965 |
| CfoI | GCGC | 2 cut(s) | 736, 1244 |
| Cfr10I | RCCGGY | 1 cut(s) | 590 |
| Cfr13I | GGNCC | 3 cut(s) | 163, 539, 1234 |
| CseI | GACGC | 2 cut(s) | 60, 1151 |
| Csp6I | GTAC | 3 cut(s) | 40, 588, 973 |
| CspAI | ACCGGT | 1 cut(s) | 590 |
| CviAII | CATG | 7 cut(s) | 547, 570, 674, 964, 1102, 1136, 1217 |
| CviQI | GTAC | 3 cut(s) | 40, 588, 973 |
| DdeI | CTNAG | 3 cut(s) | 63, 182, 789 |
| DpnI | GATC | 8 cut(s) | 50, 84, 141, 189, 365, 393, 615, 936 |
| DpnII | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| DraI | TTTAAA | 1 cut(s) | 154 |
| EaeI | YGGCCR | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 1 cut(s) | 1146 |
| EarI | CTCTTC | 1 cut(s) | 1146 |
| Ecl136II | GAGCTC | 1 cut(s) | 14 |
| Eco130I | CCWWGG | 3 cut(s) | 52, 502, 1059 |
| Eco147I | AGGCCT | 1 cut(s) | 1058 |
| Eco24I | GRGCYC | 1 cut(s) | 16 |
| Eco47I | GGWCC | 2 cut(s) | 539, 1234 |
| Eco53kI | GAGCTC | 1 cut(s) | 14 |
| Eco57I | CTGAAG | 1 cut(s) | 107 |
| EcoICRI | GAGCTC | 1 cut(s) | 14 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 842 |
| EcoRII | CCWGG | 3 cut(s) | 493, 715, 913 |
| EcoT14I | CCWWGG | 3 cut(s) | 52, 502, 1059 |
| EcoT22I | ATGCAT | 1 cut(s) | 1218 |
| EcoT38I | GRGCYC | 1 cut(s) | 16 |
| ErhI | CCWWGG | 3 cut(s) | 52, 502, 1059 |
| FaeI | CATG | 7 cut(s) | 550, 573, 677, 967, 1105, 1139, 1220 |
| FaqI | GGGAC | 2 cut(s) | 418, 820 |
| FatI | CATG | 7 cut(s) | 546, 569, 673, 963, 1101, 1135, 1216 |
| FauI | CCCGC | 1 cut(s) | 308 |
| FbaI | TGATCA | 1 cut(s) | 934 |
| Fnu4HI | GCNGC | 8 cut(s) | 108, 259, 262, 325, 328, 563, 856, 1073 |
| FokI | GGATG | 9 cut(s) | 92, 108, 239, 354, 371, 394, 552, 897, 1217 |
| FriOI | GRGCYC | 1 cut(s) | 16 |
| Fsp4HI | GCNGC | 8 cut(s) | 108, 259, 262, 325, 328, 563, 856, 1073 |
| FspBI | CTAG | 1 cut(s) | 1109 |
| GlaI | GCGC | 2 cut(s) | 735, 1243 |
| GluI | GCNGC | 8 cut(s) | 108, 259, 262, 325, 328, 563, 856, 1073 |
| GsaI | CCCAGC | 1 cut(s) | 1093 |
| GsuI | CTGGAG | 1 cut(s) | 936 |
| HaeII | RGCGCY | 1 cut(s) | 737 |
| HaeIII | GGCC | 5 cut(s) | 164, 264, 336, 982, 1058 |
| HapII | CCGG | 2 cut(s) | 252, 591 |
| HgaI | GACGC | 2 cut(s) | 60, 1151 |
| HhaI | GCGC | 2 cut(s) | 736, 1244 |
| Hin1II | CATG | 7 cut(s) | 550, 573, 677, 967, 1105, 1139, 1220 |
| Hin6I | GCGC | 2 cut(s) | 734, 1242 |
| HinP1I | GCGC | 2 cut(s) | 734, 1242 |
| HincII | GTYRAC | 1 cut(s) | 1144 |
| HindII | GTYRAC | 1 cut(s) | 1144 |
| HinfI | GANTC | 3 cut(s) | 550, 705, 1031 |
| HpaII | CCGG | 2 cut(s) | 252, 591 |
| HphI | GGTGA | 4 cut(s) | 605, 647, 731, 818 |
| Hpy166II | GTNNAC | 2 cut(s) | 998, 1144 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 87, 183 |
| Hpy188III | TCNNGA | 8 cut(s) | 115, 125, 143, 191, 386, 510, 650, 1187 |
| Hpy8I | GTNNAC | 2 cut(s) | 998, 1144 |
| Hpy99I | CGWCG | 3 cut(s) | 76, 1167, 1202 |
| HpyAV | CCTTC | 8 cut(s) | 85, 233, 301, 342, 552, 676, 953, 985 |
| HpyCH4III | ACNGT | 3 cut(s) | 834, 1018, 1050 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 321, 333, 562, 579, 731, 1064 |
| HpyF3I | CTNAG | 3 cut(s) | 63, 182, 789 |
| Hsp92II | CATG | 7 cut(s) | 550, 573, 677, 967, 1105, 1139, 1220 |
| HspAI | GCGC | 2 cut(s) | 734, 1242 |
| KpnI | GGTACC | 1 cut(s) | 591 |
| Ksp22I | TGATCA | 1 cut(s) | 934 |
| Kzo9I | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| Lsp1109I | GCAGC | 5 cut(s) | 119, 336, 339, 574, 1059 |
| LweI | GCATC | 2 cut(s) | 217, 574 |
| MaeI | CTAG | 1 cut(s) | 1109 |
| MaeIII | GTNAC | 1 cut(s) | 431 |
| MalI | GATC | 8 cut(s) | 50, 84, 141, 189, 365, 393, 615, 936 |
| MboI | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| MboII | GAAGA | 5 cut(s) | 31, 100, 401, 862, 1163 |
| MflI | RGATCY | 3 cut(s) | 48, 139, 391 |
| MhlI | GDGCHC | 2 cut(s) | 16, 1228 |
| MluCI | AATT | 2 cut(s) | 863, 938 |
| MluI | ACGCGT | 1 cut(s) | 69 |
| Mph1103I | ATGCAT | 1 cut(s) | 1218 |
| MseI | TTAA | 4 cut(s) | 153, 375, 603, 795 |
| MslI | CAYNNNNRTG | 3 cut(s) | 882, 968, 1221 |
| MspI | CCGG | 2 cut(s) | 252, 591 |
| MspR9I | CCNGG | 3 cut(s) | 495, 717, 915 |
| Mva1269I | GAATGC | 1 cut(s) | 693 |
| MvaI | CCWGG | 3 cut(s) | 495, 717, 915 |
| MvnI | CGCG | 1 cut(s) | 71 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 321, 333, 562, 579, 731, 1064 |
| NdeII | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| NlaIII | CATG | 7 cut(s) | 550, 573, 677, 967, 1105, 1139, 1220 |
| NlaIV | GGNNCC | 5 cut(s) | 141, 250, 589, 1225, 1235 |
| NmeAIII | GCCGAG | 1 cut(s) | 1101 |
| NsiI | ATGCAT | 1 cut(s) | 1218 |
| NspI | RCATGY | 1 cut(s) | 967 |
| PaeI | GCATGC | 1 cut(s) | 967 |
| PceI | AGGCCT | 1 cut(s) | 1058 |
| PctI | GAATGC | 1 cut(s) | 693 |
| PfeI | GAWTC | 3 cut(s) | 550, 705, 1031 |
| PfoI | TCCNGGA | 1 cut(s) | 913 |
| PinAI | ACCGGT | 1 cut(s) | 590 |
| PkrI | GCNGC | 8 cut(s) | 109, 260, 263, 326, 329, 564, 857, 1074 |
| PshBI | ATTAAT | 1 cut(s) | 603 |
| Psp124BI | GAGCTC | 1 cut(s) | 16 |
| Psp6I | CCWGG | 3 cut(s) | 493, 715, 913 |
| PspFI | CCCAGC | 1 cut(s) | 1089 |
| PspGI | CCWGG | 3 cut(s) | 493, 715, 913 |
| PspN4I | GGNNCC | 5 cut(s) | 141, 250, 589, 1225, 1235 |
| PspPI | GGNCC | 3 cut(s) | 163, 539, 1234 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 654, 686 |
| PsuI | RGATCY | 3 cut(s) | 48, 139, 391 |
| RsaI | GTAC | 3 cut(s) | 41, 589, 974 |
| RsaNI | GTAC | 3 cut(s) | 40, 588, 973 |
| RseI | CAYNNNNRTG | 3 cut(s) | 882, 968, 1221 |
| SacI | GAGCTC | 1 cut(s) | 16 |
| SaqAI | TTAA | 4 cut(s) | 153, 375, 603, 795 |
| SatI | GCNGC | 8 cut(s) | 108, 259, 262, 325, 328, 563, 856, 1073 |
| Sau3AI | GATC | 8 cut(s) | 48, 82, 139, 187, 363, 391, 613, 934 |
| Sau96I | GGNCC | 3 cut(s) | 163, 539, 1234 |
| ScaI | AGTACT | 1 cut(s) | 41 |
| ScrFI | CCNGG | 3 cut(s) | 495, 717, 915 |
| SduI | GDGCHC | 2 cut(s) | 16, 1228 |
| SetI | ASST | 9 cut(s) | 16, 180, 420, 499, 544, 672, 727, 816, 1095 |
| SfaNI | GCATC | 2 cut(s) | 217, 574 |
| SinI | GGWCC | 2 cut(s) | 539, 1234 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 882, 968, 1221 |
| SmlI | CTYRAG | 2 cut(s) | 233, 1185 |
| SmoI | CTYRAG | 2 cut(s) | 233, 1185 |
| SphI | GCATGC | 1 cut(s) | 967 |
| Sse9I | AATT | 2 cut(s) | 863, 938 |
| SseBI | AGGCCT | 1 cut(s) | 1058 |
| SsiI | CCGC | 5 cut(s) | 258, 261, 315, 623, 855 |
| SspMI | CTAG | 1 cut(s) | 1109 |
| SstI | GAGCTC | 1 cut(s) | 16 |
| StuI | AGGCCT | 1 cut(s) | 1058 |
| StyD4I | CCNGG | 3 cut(s) | 493, 715, 913 |
| StyI | CCWWGG | 3 cut(s) | 52, 502, 1059 |
| TaaI | ACNGT | 3 cut(s) | 834, 1018, 1050 |
| TasI | AATT | 2 cut(s) | 863, 938 |
| TatI | WGTACW | 1 cut(s) | 39 |
| TauI | GCSGC | 3 cut(s) | 261, 264, 858 |
| TfiI | GAWTC | 3 cut(s) | 550, 705, 1031 |
| Tru1I | TTAA | 4 cut(s) | 153, 375, 603, 795 |
| Tru9I | TTAA | 4 cut(s) | 153, 375, 603, 795 |
| TscAI | CASTG | 5 cut(s) | 837, 1021, 1055, 1074, 1137 |
| TseI | GCWGC | 5 cut(s) | 107, 324, 327, 562, 1072 |
| TspDTI | ATGAA | 7 cut(s) | 500, 530, 662, 744, 972, 1004, 1023 |
| TspRI | CASTG | 5 cut(s) | 837, 1021, 1055, 1074, 1137 |
| VpaK11BI | GGWCC | 2 cut(s) | 539, 1234 |
| VspI | ATTAAT | 1 cut(s) | 603 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 842 |
| XceI | RCATGY | 1 cut(s) | 967 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 293 |
| XspI | CTAG | 1 cut(s) | 1109 |
| ZrmI | AGTACT | 1 cut(s) | 41 |
| Zsp2I | ATGCAT | 1 cut(s) | 1218 |