Niemann-Pick C1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 53 | 3.3e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 5 - 37 | 1.3e-12 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.5e-17 | PPR repeat family |
| PPR | PF01535 | 11 - 40 | 5.8e-08 | PPR repeat |
| PPR_1 | PF12854 | 40 - 72 | 1.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 50 - 91 | 1.8e-08 | PPR repeat family |
| PPR_2 | PF13041 | 79 - 126 | 6.3e-11 | PPR repeat family |
| PPR_3 | PF13812 | 108 - 160 | 4.5e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 109 - 142 | 4e-09 | PPR repeat |
| PPR_2 | PF13041 | 125 - 161 | 1.4e-06 | PPR repeat family |
| PPR_2 | PF13041 | 148 - 194 | 2.6e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 596 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AfaI | GTAC | 1 cut(s) | 353 |
| AgsI | TTSAA | 3 cut(s) | 137, 263, 335 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 215, 247, 558, 590 |
| AluBI | AGCT | 3 cut(s) | 113, 226, 278 |
| AluI | AGCT | 3 cut(s) | 113, 226, 278 |
| Alw21I | GWGCWC | 1 cut(s) | 455 |
| Alw26I | GTCTC | 1 cut(s) | 488 |
| Alw44I | GTGCAC | 1 cut(s) | 451 |
| AlwI | GGATC | 1 cut(s) | 596 |
| AoxI | GGCC | 2 cut(s) | 118, 160 |
| ApaLI | GTGCAC | 1 cut(s) | 451 |
| AseI | ATTAAT | 1 cut(s) | 569 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 95 |
| AspS9I | GGNCC | 1 cut(s) | 301 |
| AvaII | GGWCC | 1 cut(s) | 301 |
| BaeGI | GKGCMC | 1 cut(s) | 455 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| Bbv12I | GWGCWC | 1 cut(s) | 455 |
| BccI | CCATC | 5 cut(s) | 47, 152, 205, 523, 556 |
| BclI | TGATCA | 1 cut(s) | 363 |
| BcoDI | GTCTC | 1 cut(s) | 488 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| Bme18I | GGWCC | 1 cut(s) | 301 |
| BmgT120I | GGNCC | 1 cut(s) | 301 |
| BmiI | GGNNCC | 1 cut(s) | 302 |
| BmsI | GCATC | 5 cut(s) | 73, 96, 299, 331, 541 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 465, 497 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| Bse1I | ACTGG | 1 cut(s) | 159 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseGI | GGATG | 2 cut(s) | 58, 163 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseNI | ACTGG | 1 cut(s) | 159 |
| BseSI | GKGCMC | 1 cut(s) | 455 |
| BshFI | GGCC | 2 cut(s) | 120, 162 |
| BsiHKAI | GWGCWC | 1 cut(s) | 455 |
| BslFI | GGGAC | 3 cut(s) | 314, 384, 525 |
| BsmAI | GTCTC | 1 cut(s) | 488 |
| BsmFI | GGGAC | 3 cut(s) | 314, 384, 525 |
| BsmI | GAATGC | 1 cut(s) | 221 |
| BsnI | GGCC | 2 cut(s) | 120, 162 |
| Bsp1286I | GDGCHC | 1 cut(s) | 455 |
| Bsp143I | GATC | 2 cut(s) | 363, 601 |
| BspANI | GGCC | 2 cut(s) | 120, 162 |
| BspHI | TCATGA | 1 cut(s) | 520 |
| BspLI | GGNNCC | 1 cut(s) | 302 |
| BspMAI | CTGCAG | 1 cut(s) | 550 |
| BspPI | GGATC | 1 cut(s) | 596 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BsrI | ACTGG | 1 cut(s) | 159 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 2 cut(s) | 363, 601 |
| Bst4CI | ACNGT | 3 cut(s) | 251, 314, 499 |
| BstC8I | GCNNGC | 1 cut(s) | 111 |
| BstDEI | CTNAG | 1 cut(s) | 413 |
| BstF5I | GGATG | 2 cut(s) | 58, 163 |
| BstKTI | GATC | 2 cut(s) | 366, 604 |
| BstMAI | GTCTC | 1 cut(s) | 488 |
| BstMBI | GATC | 2 cut(s) | 363, 601 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstSLI | GKGCMC | 1 cut(s) | 455 |
| BstX2I | RGATCY | 1 cut(s) | 601 |
| BstYI | RGATCY | 1 cut(s) | 601 |
| BsuRI | GGCC | 2 cut(s) | 120, 162 |
| BtsCI | GGATG | 2 cut(s) | 58, 163 |
| BtsI | GCAGTG | 1 cut(s) | 513 |
| BtsIMutI | CAGTG | 1 cut(s) | 513 |
| Cac8I | GCNNGC | 1 cut(s) | 111 |
| CciI | TCATGA | 1 cut(s) | 520 |
| Cfr13I | GGNCC | 1 cut(s) | 301 |
| Csp6I | GTAC | 1 cut(s) | 352 |
| CviAII | CATG | 3 cut(s) | 220, 521, 555 |
| CviJI | RGCY | 6 cut(s) | 113, 120, 162, 226, 278, 387 |
| CviKI_1 | RGCY | 6 cut(s) | 113, 120, 162, 226, 278, 387 |
| CviQI | GTAC | 1 cut(s) | 352 |
| DdeI | CTNAG | 1 cut(s) | 413 |
| DpnI | GATC | 2 cut(s) | 365, 603 |
| DpnII | GATC | 2 cut(s) | 363, 601 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eco47I | GGWCC | 1 cut(s) | 301 |
| EcoT22I | ATGCAT | 2 cut(s) | 221, 556 |
| FaeI | CATG | 3 cut(s) | 223, 524, 558 |
| FaqI | GGGAC | 3 cut(s) | 314, 384, 525 |
| FatI | CATG | 3 cut(s) | 219, 520, 554 |
| FbaI | TGATCA | 1 cut(s) | 363 |
| FokI | GGATG | 2 cut(s) | 65, 170 |
| HaeIII | GGCC | 2 cut(s) | 120, 162 |
| Hin1II | CATG | 3 cut(s) | 223, 524, 558 |
| HindIII | AAGCTT | 1 cut(s) | 111 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 453 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 473 |
| Hpy188III | TCNNGA | 1 cut(s) | 521 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 453 |
| HpyAV | CCTTC | 1 cut(s) | 257 |
| HpyCH4III | ACNGT | 3 cut(s) | 251, 314, 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 350 |
| HpyF3I | CTNAG | 1 cut(s) | 413 |
| HpySE526I | ACGT | 1 cut(s) | 350 |
| Hsp92II | CATG | 3 cut(s) | 223, 524, 558 |
| Ksp22I | TGATCA | 1 cut(s) | 363 |
| Kzo9I | GATC | 2 cut(s) | 363, 601 |
| LpnPI | CCDG | 7 cut(s) | 140, 176, 212, 264, 351, 520, 618 |
| LweI | GCATC | 5 cut(s) | 73, 96, 299, 331, 541 |
| MaeII | ACGT | 1 cut(s) | 350 |
| MalI | GATC | 2 cut(s) | 365, 603 |
| MboI | GATC | 2 cut(s) | 363, 601 |
| MboII | GAAGA | 2 cut(s) | 84, 437 |
| MflI | RGATCY | 1 cut(s) | 601 |
| MhlI | GDGCHC | 1 cut(s) | 455 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 5 cut(s) | 92, 243, 285, 465, 566 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MnlI | CCTC | 2 cut(s) | 377, 467 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| Mph1103I | ATGCAT | 2 cut(s) | 221, 556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 95 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 2 cut(s) | 389, 569 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| Mva1269I | GAATGC | 1 cut(s) | 221 |
| NdeII | GATC | 2 cut(s) | 363, 601 |
| NlaIII | CATG | 3 cut(s) | 223, 524, 558 |
| NlaIV | GGNNCC | 1 cut(s) | 302 |
| NsiI | ATGCAT | 2 cut(s) | 221, 556 |
| PagI | TCATGA | 1 cut(s) | 520 |
| PctI | GAATGC | 1 cut(s) | 221 |
| PdmI | GAANNNNTTC | 1 cut(s) | 95 |
| PshBI | ATTAAT | 1 cut(s) | 569 |
| PspN4I | GGNNCC | 1 cut(s) | 302 |
| PspPI | GGNCC | 1 cut(s) | 301 |
| PstI | CTGCAG | 1 cut(s) | 550 |
| PsuI | RGATCY | 1 cut(s) | 601 |
| RsaI | GTAC | 1 cut(s) | 353 |
| RsaNI | GTAC | 1 cut(s) | 352 |
| SaqAI | TTAA | 2 cut(s) | 389, 569 |
| Sau3AI | GATC | 2 cut(s) | 363, 601 |
| Sau96I | GGNCC | 1 cut(s) | 301 |
| SduI | GDGCHC | 1 cut(s) | 455 |
| SetI | ASST | 6 cut(s) | 115, 228, 268, 280, 340, 353 |
| SfaNI | GCATC | 5 cut(s) | 73, 96, 299, 331, 541 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SinI | GGWCC | 1 cut(s) | 301 |
| Sse9I | AATT | 5 cut(s) | 92, 243, 285, 465, 566 |
| SspI | AATATT | 1 cut(s) | 133 |
| TaaI | ACNGT | 3 cut(s) | 251, 314, 499 |
| TaiI | ACGT | 1 cut(s) | 353 |
| TasI | AATT | 5 cut(s) | 92, 243, 285, 465, 566 |
| Tru1I | TTAA | 2 cut(s) | 389, 569 |
| Tru9I | TTAA | 2 cut(s) | 389, 569 |
| TscAI | CASTG | 1 cut(s) | 513 |
| TspDTI | ATGAA | 4 cut(s) | 236, 411, 509, 537 |
| TspGWI | ACGGA | 1 cut(s) | 396 |
| TspRI | CASTG | 1 cut(s) | 513 |
| VneI | GTGCAC | 1 cut(s) | 451 |
| VpaK11BI | GGWCC | 1 cut(s) | 301 |
| VspI | ATTAAT | 1 cut(s) | 569 |
| XmnI | GAANNNNTTC | 1 cut(s) | 95 |
| Zsp2I | ATGCAT | 2 cut(s) | 221, 556 |