Transposase-associated domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1044 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1972 |
| AccI | GTMKAC | 2 cut(s) | 744, 2064 |
| AccII | CGCG | 2 cut(s) | 558, 1165 |
| AciI | CCGC | 5 cut(s) | 870, 1163, 1604, 1625, 1995 |
| AclWI | GGATC | 2 cut(s) | 185, 198 |
| AcoI | YGGCCR | 1 cut(s) | 765 |
| AcsI | RAATTY | 2 cut(s) | 737, 1521 |
| AcuI | CTGAAG | 2 cut(s) | 426, 1728 |
| AcyI | GRCGYC | 1 cut(s) | 1041 |
| AfaI | GTAC | 5 cut(s) | 103, 726, 806, 1237, 1492 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 476, 550, 907, 1972 |
| AflIII | ACRYGT | 2 cut(s) | 568, 2016 |
| AjiI | CACGTC | 1 cut(s) | 2019 |
| AjnI | CCWGG | 5 cut(s) | 212, 298, 457, 517, 1777 |
| AluBI | AGCT | 4 cut(s) | 242, 887, 1390, 1555 |
| AluI | AGCT | 4 cut(s) | 242, 887, 1390, 1555 |
| Alw26I | GTCTC | 5 cut(s) | 944, 995, 1461, 1645, 2025 |
| AlwI | GGATC | 2 cut(s) | 185, 198 |
| Ama87I | CYCGRG | 1 cut(s) | 1186 |
| AoxI | GGCC | 3 cut(s) | 266, 765, 2027 |
| ApeKI | GCWGC | 1 cut(s) | 242 |
| ApoI | RAATTY | 2 cut(s) | 737, 1521 |
| AspLEI | GCGC | 2 cut(s) | 560, 1380 |
| AspS9I | GGNCC | 7 cut(s) | 216, 266, 302, 773, 1088, 1160, 1584 |
| AsuHPI | GGTGA | 4 cut(s) | 239, 383, 890, 2040 |
| AvaI | CYCGRG | 1 cut(s) | 1186 |
| AvaII | GGWCC | 6 cut(s) | 216, 302, 773, 1088, 1160, 1584 |
| AxyI | CCTNAGG | 1 cut(s) | 1155 |
| BalI | TGGCCA | 1 cut(s) | 767 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 366, 398 |
| BauI | CACGAG | 3 cut(s) | 471, 524, 2010 |
| BbvI | GCAGC | 1 cut(s) | 229 |
| BccI | CCATC | 9 cut(s) | 176, 400, 404, 493, 652, 1876, 1918, 1951, 2038 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1167, 1201 |
| BciT130I | CCWGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| BclI | TGATCA | 1 cut(s) | 250 |
| BcoDI | GTCTC | 5 cut(s) | 944, 995, 1461, 1645, 2025 |
| BfaI | CTAG | 2 cut(s) | 605, 1263 |
| BfmI | CTRYAG | 4 cut(s) | 243, 510, 994, 2065 |
| BfoI | RGCGCY | 1 cut(s) | 1381 |
| BisI | GCNGC | 2 cut(s) | 243, 1605 |
| BlpI | GCTNAGC | 1 cut(s) | 1908 |
| BlsI | GCNGC | 2 cut(s) | 244, 1606 |
| Bme1390I | CCNGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| Bme18I | GGWCC | 6 cut(s) | 216, 302, 773, 1088, 1160, 1584 |
| BmeT110I | CYCGRG | 1 cut(s) | 1186 |
| BmgBI | CACGTC | 1 cut(s) | 2019 |
| BmgT120I | GGNCC | 7 cut(s) | 216, 266, 302, 773, 1088, 1160, 1584 |
| BmiI | GGNNCC | 5 cut(s) | 192, 1161, 1346, 1585, 1586 |
| BmrFI | CCNGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| BmsI | GCATC | 7 cut(s) | 340, 635, 835, 1429, 1446, 1591, 1616 |
| BoxI | GACNNNNGTC | 1 cut(s) | 307 |
| BpmI | CTGGAG | 1 cut(s) | 1665 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1908 |
| BpuEI | CTTGAG | 1 cut(s) | 566 |
| Bsa29I | ATCGAT | 1 cut(s) | 1599 |
| BsaAI | YACGTR | 1 cut(s) | 1340 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1362 |
| BsaHI | GRCGYC | 1 cut(s) | 1041 |
| BsaI | GGTCTC | 1 cut(s) | 1461 |
| BsaJI | CCNNGG | 6 cut(s) | 212, 457, 458, 762, 1084, 1777 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1743, 1773 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 476, 550, 907, 1972 |
| Bse118I | RCCGGY | 1 cut(s) | 1248 |
| Bse1I | ACTGG | 1 cut(s) | 1381 |
| Bse21I | CCTNAGG | 1 cut(s) | 1155 |
| Bse3DI | GCAATG | 1 cut(s) | 1116 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1362 |
| BseBI | CCWGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| BseCI | ATCGAT | 1 cut(s) | 1599 |
| BseDI | CCNNGG | 6 cut(s) | 212, 457, 458, 762, 1084, 1777 |
| BseGI | GGATG | 5 cut(s) | 207, 897, 916, 1774, 1929 |
| BseJI | GATNNNNATC | 1 cut(s) | 1362 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 476, 550, 907, 1972 |
| BseMI | GCAATG | 1 cut(s) | 1116 |
| BseMII | CTCAG | 2 cut(s) | 602, 1899 |
| BseNI | ACTGG | 1 cut(s) | 1381 |
| BseRI | GAGGAG | 1 cut(s) | 1815 |
| BseXI | GCAGC | 1 cut(s) | 229 |
| BseYI | CCCAGC | 1 cut(s) | 887 |
| Bsh1236I | CGCG | 2 cut(s) | 558, 1165 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1599 |
| BshFI | GGCC | 3 cut(s) | 268, 767, 2029 |
| BshVI | ATCGAT | 1 cut(s) | 1599 |
| BsiEI | CGRYCG | 1 cut(s) | 1599 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1186 |
| BsiSI | CCGG | 1 cut(s) | 1249 |
| BslFI | GGGAC | 4 cut(s) | 516, 1570, 1760, 2055 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 476, 550, 907, 1972 |
| BsmAI | GTCTC | 5 cut(s) | 944, 995, 1461, 1645, 2025 |
| BsmBI | CGTCTC | 1 cut(s) | 2025 |
| BsmFI | GGGAC | 4 cut(s) | 516, 1570, 1760, 2055 |
| BsmI | GAATGC | 1 cut(s) | 62 |
| BsnI | GGCC | 3 cut(s) | 268, 767, 2029 |
| Bso31I | GGTCTC | 1 cut(s) | 1461 |
| BsoBI | CYCGRG | 1 cut(s) | 1186 |
| Bsp143I | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1908 |
| BspACI | CCGC | 5 cut(s) | 870, 1163, 1604, 1625, 1995 |
| BspANI | GGCC | 3 cut(s) | 268, 767, 2029 |
| BspCNI | CTCAG | 2 cut(s) | 601, 1900 |
| BspDI | ATCGAT | 1 cut(s) | 1599 |
| BspFNI | CGCG | 2 cut(s) | 558, 1165 |
| BspHI | TCATGA | 2 cut(s) | 810, 1510 |
| BspLI | GGNNCC | 5 cut(s) | 192, 1161, 1346, 1585, 1586 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspPI | GGATC | 2 cut(s) | 185, 198 |
| BspQI | GCTCTTC | 2 cut(s) | 1788, 1836 |
| BspTNI | GGTCTC | 1 cut(s) | 1461 |
| BsrDI | GCAATG | 1 cut(s) | 1116 |
| BsrFI | RCCGGY | 1 cut(s) | 1248 |
| BsrI | ACTGG | 1 cut(s) | 1381 |
| BssAI | RCCGGY | 1 cut(s) | 1248 |
| BssECI | CCNNGG | 6 cut(s) | 212, 457, 458, 762, 1084, 1777 |
| BssMI | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| BssNI | GRCGYC | 1 cut(s) | 1041 |
| BssSI | CACGAG | 3 cut(s) | 471, 524, 2010 |
| BssT1I | CCWWGG | 1 cut(s) | 762 |
| Bst2BI | CACGAG | 3 cut(s) | 471, 524, 2010 |
| Bst2UI | CCWGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| Bst4CI | ACNGT | 7 cut(s) | 306, 507, 1085, 1824, 2038, 2069, 2077 |
| Bst6I | CTCTTC | 6 cut(s) | 715, 909, 1629, 1643, 1788, 1836 |
| BstACI | GRCGYC | 1 cut(s) | 1041 |
| BstBAI | YACGTR | 1 cut(s) | 1340 |
| BstC8I | GCNNGC | 5 cut(s) | 60, 153, 1435, 1756, 1848 |
| BstDEI | CTNAG | 7 cut(s) | 79, 173, 588, 636, 1155, 1655, 1908 |
| BstDSI | CCRYGG | 1 cut(s) | 1084 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 474, 905 |
| BstF5I | GGATG | 5 cut(s) | 207, 897, 916, 1774, 1929 |
| BstFNI | CGCG | 2 cut(s) | 558, 1165 |
| BstH2I | RGCGCY | 1 cut(s) | 1381 |
| BstHHI | GCGC | 2 cut(s) | 560, 1380 |
| BstKTI | GATC | 4 cut(s) | 193, 253, 1366, 1599 |
| BstMAI | GTCTC | 5 cut(s) | 944, 995, 1461, 1645, 2025 |
| BstMBI | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| BstMCI | CGRYCG | 1 cut(s) | 1599 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 229, 1505, 1610, 1856 |
| BstNI | CCWGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| BstNSI | RCATGY | 5 cut(s) | 62, 89, 364, 572, 1024 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 307 |
| BstSCI | CCNGG | 5 cut(s) | 212, 298, 457, 517, 1777 |
| BstSFI | CTRYAG | 4 cut(s) | 243, 510, 994, 2065 |
| BstUI | CGCG | 2 cut(s) | 558, 1165 |
| BstV1I | GCAGC | 1 cut(s) | 229 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1548 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| Bsu15I | ATCGAT | 1 cut(s) | 1599 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1155 |
| BsuRI | GGCC | 3 cut(s) | 268, 767, 2029 |
| BsuTUI | ATCGAT | 1 cut(s) | 1599 |
| BtgI | CCRYGG | 1 cut(s) | 1084 |
| BtrI | CACGTC | 1 cut(s) | 2019 |
| BtsCI | GGATG | 5 cut(s) | 207, 897, 916, 1774, 1929 |
| BtsI | GCAGTG | 1 cut(s) | 1674 |
| BtsIMutI | CAGTG | 4 cut(s) | 33, 1388, 1674, 2082 |
| Cac8I | GCNNGC | 5 cut(s) | 60, 153, 1435, 1756, 1848 |
| CciI | TCATGA | 2 cut(s) | 810, 1510 |
| CfoI | GCGC | 2 cut(s) | 560, 1380 |
| Cfr10I | RCCGGY | 1 cut(s) | 1248 |
| Cfr13I | GGNCC | 7 cut(s) | 216, 266, 302, 773, 1088, 1160, 1584 |
| ClaI | ATCGAT | 1 cut(s) | 1599 |
| Csp6I | GTAC | 5 cut(s) | 102, 725, 805, 1236, 1491 |
| CviQI | GTAC | 5 cut(s) | 102, 725, 805, 1236, 1491 |
| DdeI | CTNAG | 7 cut(s) | 79, 173, 588, 636, 1155, 1655, 1908 |
| DpnI | GATC | 4 cut(s) | 192, 252, 1365, 1598 |
| DpnII | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| DraI | TTTAAA | 2 cut(s) | 1561, 1987 |
| EaeI | YGGCCR | 1 cut(s) | 765 |
| Eam1104I | CTCTTC | 6 cut(s) | 715, 909, 1629, 1643, 1788, 1836 |
| EarI | CTCTTC | 6 cut(s) | 715, 909, 1629, 1643, 1788, 1836 |
| Eco130I | CCWWGG | 1 cut(s) | 762 |
| Eco31I | GGTCTC | 1 cut(s) | 1461 |
| Eco32I | GATATC | 1 cut(s) | 1672 |
| Eco47I | GGWCC | 6 cut(s) | 216, 302, 773, 1088, 1160, 1584 |
| Eco57I | CTGAAG | 2 cut(s) | 426, 1728 |
| Eco81I | CCTNAGG | 1 cut(s) | 1155 |
| Eco88I | CYCGRG | 1 cut(s) | 1186 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 474, 905 |
| EcoO109I | RGGNCCY | 2 cut(s) | 266, 1584 |
| EcoRI | GAATTC | 1 cut(s) | 737 |
| EcoRII | CCWGG | 5 cut(s) | 212, 298, 457, 517, 1777 |
| EcoRV | GATATC | 1 cut(s) | 1672 |
| EcoT14I | CCWWGG | 1 cut(s) | 762 |
| EcoT22I | ATGCAT | 2 cut(s) | 64, 355 |
| ErhI | CCWWGG | 1 cut(s) | 762 |
| Esp3I | CGTCTC | 1 cut(s) | 2025 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1747, 1779 |
| FaqI | GGGAC | 4 cut(s) | 516, 1570, 1760, 2055 |
| FbaI | TGATCA | 1 cut(s) | 250 |
| FblI | GTMKAC | 2 cut(s) | 744, 2064 |
| Fnu4HI | GCNGC | 2 cut(s) | 243, 1605 |
| FokI | GGATG | 5 cut(s) | 194, 904, 923, 1781, 1936 |
| Fsp4HI | GCNGC | 2 cut(s) | 243, 1605 |
| FspBI | CTAG | 2 cut(s) | 605, 1263 |
| GlaI | GCGC | 2 cut(s) | 559, 1379 |
| GluI | GCNGC | 2 cut(s) | 243, 1605 |
| GsaI | CCCAGC | 1 cut(s) | 891 |
| GsuI | CTGGAG | 1 cut(s) | 1665 |
| HaeII | RGCGCY | 1 cut(s) | 1381 |
| HaeIII | GGCC | 3 cut(s) | 268, 767, 2029 |
| HapII | CCGG | 1 cut(s) | 1249 |
| HhaI | GCGC | 2 cut(s) | 560, 1380 |
| Hin1I | GRCGYC | 1 cut(s) | 1041 |
| Hin6I | GCGC | 2 cut(s) | 558, 1378 |
| HinP1I | GCGC | 2 cut(s) | 558, 1378 |
| HincII | GTYRAC | 2 cut(s) | 205, 745 |
| HindII | GTYRAC | 2 cut(s) | 205, 745 |
| HindIII | AAGCTT | 1 cut(s) | 1388 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| HpaII | CCGG | 1 cut(s) | 1249 |
| HphI | GGTGA | 4 cut(s) | 239, 383, 890, 2040 |
| Hpy166II | GTNNAC | 5 cut(s) | 205, 531, 745, 1238, 2065 |
| Hpy188I | TCNGA | 5 cut(s) | 328, 397, 591, 1057, 1425 |
| Hpy8I | GTNNAC | 5 cut(s) | 205, 531, 745, 1238, 2065 |
| Hpy99I | CGWCG | 2 cut(s) | 746, 1043 |
| HpyAV | CCTTC | 6 cut(s) | 92, 279, 362, 470, 1165, 1720 |
| HpyCH4III | ACNGT | 7 cut(s) | 306, 507, 1085, 1824, 2038, 2069, 2077 |
| HpyCH4IV | ACGT | 3 cut(s) | 1041, 1339, 2018 |
| HpyCH4V | TGCA | 9 cut(s) | 58, 62, 245, 346, 353, 648, 1499, 1613, 2101 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 229, 1505, 1610, 1856 |
| HpyF3I | CTNAG | 7 cut(s) | 79, 173, 588, 636, 1155, 1655, 1908 |
| HpySE526I | ACGT | 3 cut(s) | 1041, 1339, 2018 |
| Hsp92I | GRCGYC | 1 cut(s) | 1041 |
| HspAI | GCGC | 2 cut(s) | 558, 1378 |
| KflI | GGGWCCC | 1 cut(s) | 1584 |
| Ksp22I | TGATCA | 1 cut(s) | 250 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| Kzo9I | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| LguI | GCTCTTC | 2 cut(s) | 1788, 1836 |
| LmnI | GCTCC | 3 cut(s) | 1552, 1684, 1751 |
| Lsp1109I | GCAGC | 1 cut(s) | 229 |
| LweI | GCATC | 7 cut(s) | 340, 635, 835, 1429, 1446, 1591, 1616 |
| MaeI | CTAG | 2 cut(s) | 605, 1263 |
| MaeII | ACGT | 3 cut(s) | 1041, 1339, 2018 |
| MaeIII | GTNAC | 5 cut(s) | 309, 896, 1265, 1759, 2012 |
| MalI | GATC | 4 cut(s) | 192, 252, 1365, 1598 |
| MboI | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| MfeI | CAATTG | 2 cut(s) | 1620, 1835 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MlsI | TGGCCA | 1 cut(s) | 767 |
| MluNI | TGGCCA | 1 cut(s) | 767 |
| MlyI | GAGTC | 2 cut(s) | 428, 904 |
| MmeI | TCCRAC | 1 cut(s) | 1729 |
| Mox20I | TGGCCA | 1 cut(s) | 767 |
| Mph1103I | ATGCAT | 2 cut(s) | 64, 355 |
| MscI | TGGCCA | 1 cut(s) | 767 |
| MslI | CAYNNNNRTG | 6 cut(s) | 36, 567, 606, 903, 1257, 1515 |
| Msp20I | TGGCCA | 1 cut(s) | 767 |
| MspA1I | CMGCKG | 1 cut(s) | 242 |
| MspI | CCGG | 1 cut(s) | 1249 |
| MspR9I | CCNGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| MssI | GTTTAAAC | 1 cut(s) | 1987 |
| MunI | CAATTG | 2 cut(s) | 1620, 1835 |
| Mva1269I | GAATGC | 1 cut(s) | 62 |
| MvaI | CCWGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| MvnI | CGCG | 2 cut(s) | 558, 1165 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 229, 1505, 1610, 1856 |
| NdeII | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| NlaIV | GGNNCC | 5 cut(s) | 192, 1161, 1346, 1585, 1586 |
| NmuCI | GTSAC | 4 cut(s) | 309, 896, 1265, 2012 |
| NsiI | ATGCAT | 2 cut(s) | 64, 355 |
| NspI | RCATGY | 5 cut(s) | 62, 89, 364, 572, 1024 |
| PaeI | GCATGC | 1 cut(s) | 62 |
| PaeR7I | CTCGAG | 1 cut(s) | 1186 |
| PagI | TCATGA | 2 cut(s) | 810, 1510 |
| PasI | CCCWGGG | 1 cut(s) | 458 |
| PciI | ACATGT | 1 cut(s) | 568 |
| PciSI | GCTCTTC | 2 cut(s) | 1788, 1836 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 996 |
| PctI | GAATGC | 1 cut(s) | 62 |
| PfeI | GAWTC | 9 cut(s) | 323, 795, 1138, 1182, 1191, 1288, 1450, 1471, 1782 |
| PflFI | GACNNNGTC | 1 cut(s) | 1040 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1972 |
| PkrI | GCNGC | 2 cut(s) | 244, 1606 |
| Ple19I | CGATCG | 1 cut(s) | 1599 |
| PleI | GAGTC | 2 cut(s) | 427, 903 |
| PmeI | GTTTAAAC | 1 cut(s) | 1987 |
| PpsI | GAGTC | 2 cut(s) | 427, 903 |
| Ppu21I | YACGTR | 1 cut(s) | 1340 |
| PpuMI | RGGWCCY | 1 cut(s) | 1584 |
| PscI | ACATGT | 1 cut(s) | 568 |
| PshAI | GACNNNNGTC | 1 cut(s) | 307 |
| Psp5II | RGGWCCY | 1 cut(s) | 1584 |
| Psp6I | CCWGG | 5 cut(s) | 212, 298, 457, 517, 1777 |
| PspFI | CCCAGC | 1 cut(s) | 887 |
| PspGI | CCWGG | 5 cut(s) | 212, 298, 457, 517, 1777 |
| PspN4I | GGNNCC | 5 cut(s) | 192, 1161, 1346, 1585, 1586 |
| PspPI | GGNCC | 7 cut(s) | 216, 266, 302, 773, 1088, 1160, 1584 |
| PspPPI | RGGWCCY | 1 cut(s) | 1584 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| PsyI | GACNNNGTC | 1 cut(s) | 1040 |
| PvuI | CGATCG | 1 cut(s) | 1599 |
| PvuII | CAGCTG | 1 cut(s) | 242 |
| RsaI | GTAC | 5 cut(s) | 103, 726, 806, 1237, 1492 |
| RsaNI | GTAC | 5 cut(s) | 102, 725, 805, 1236, 1491 |
| RseI | CAYNNNNRTG | 6 cut(s) | 36, 567, 606, 903, 1257, 1515 |
| SalI | GTCGAC | 1 cut(s) | 743 |
| SapI | GCTCTTC | 2 cut(s) | 1788, 1836 |
| SatI | GCNGC | 2 cut(s) | 243, 1605 |
| Sau3AI | GATC | 4 cut(s) | 190, 250, 1363, 1596 |
| Sau96I | GGNCC | 7 cut(s) | 216, 266, 302, 773, 1088, 1160, 1584 |
| SchI | GAGTC | 2 cut(s) | 428, 904 |
| ScrFI | CCNGG | 5 cut(s) | 214, 300, 459, 519, 1779 |
| SfaNI | GCATC | 7 cut(s) | 340, 635, 835, 1429, 1446, 1591, 1616 |
| SfcI | CTRYAG | 4 cut(s) | 243, 510, 994, 2065 |
| Sfr274I | CTCGAG | 1 cut(s) | 1186 |
| SinI | GGWCC | 6 cut(s) | 216, 302, 773, 1088, 1160, 1584 |
| SlaI | CTCGAG | 1 cut(s) | 1186 |
| SmiI | ATTTAAAT | 1 cut(s) | 1561 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 36, 567, 606, 903, 1257, 1515 |
| SmlI | CTYRAG | 2 cut(s) | 545, 1186 |
| SmoI | CTYRAG | 2 cut(s) | 545, 1186 |
| SphI | GCATGC | 1 cut(s) | 62 |
| SsiI | CCGC | 5 cut(s) | 870, 1163, 1604, 1625, 1995 |
| SspI | AATATT | 1 cut(s) | 979 |
| SspMI | CTAG | 2 cut(s) | 605, 1263 |
| StyD4I | CCNGG | 5 cut(s) | 212, 298, 457, 517, 1777 |
| StyI | CCWWGG | 1 cut(s) | 762 |
| SwaI | ATTTAAAT | 1 cut(s) | 1561 |
| TaaI | ACNGT | 7 cut(s) | 306, 507, 1085, 1824, 2038, 2069, 2077 |
| TaiI | ACGT | 3 cut(s) | 1044, 1342, 2021 |
| TaqI | TCGA | 7 cut(s) | 495, 692, 744, 757, 1187, 1599, 2033 |
| TaqII | GACCGA | 2 cut(s) | 233, 1443 |
| TatI | WGTACW | 3 cut(s) | 724, 804, 1235 |
| TauI | GCSGC | 1 cut(s) | 1607 |
| TfiI | GAWTC | 9 cut(s) | 323, 795, 1138, 1182, 1191, 1288, 1450, 1471, 1782 |
| TscAI | CASTG | 4 cut(s) | 40, 1388, 1681, 2082 |
| TseFI | GTSAC | 4 cut(s) | 309, 896, 1265, 2012 |
| TseI | GCWGC | 1 cut(s) | 242 |
| Tsp45I | GTSAC | 4 cut(s) | 309, 896, 1265, 2012 |
| TspGWI | ACGGA | 3 cut(s) | 105, 1679, 1936 |
| TspRI | CASTG | 4 cut(s) | 40, 1388, 1681, 2082 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1040 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1972 |
| VpaK11BI | GGWCC | 6 cut(s) | 216, 302, 773, 1088, 1160, 1584 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 474, 905 |
| XapI | RAATTY | 2 cut(s) | 737, 1521 |
| XbaI | TCTAGA | 1 cut(s) | 604 |
| XceI | RCATGY | 5 cut(s) | 62, 89, 364, 572, 1024 |
| XhoI | CTCGAG | 1 cut(s) | 1186 |
| XmiI | GTMKAC | 2 cut(s) | 744, 2064 |
| XspI | CTAG | 2 cut(s) | 605, 1263 |
| ZraI | GACGTC | 1 cut(s) | 1042 |
| Zsp2I | ATGCAT | 2 cut(s) | 64, 355 |