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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 177 |
| AccBSI | CCGCTC | 1 cut(s) | 151 |
| AciI | CCGC | 1 cut(s) | 149 |
| AclWI | GGATC | 2 cut(s) | 39, 162 |
| AcoI | YGGCCR | 1 cut(s) | 67 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 90, 177 |
| AgsI | TTSAA | 4 cut(s) | 221, 329, 412, 422 |
| AjnI | CCWGG | 2 cut(s) | 89, 265 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 414, 446 |
| AluBI | AGCT | 3 cut(s) | 103, 395, 484 |
| AluI | AGCT | 3 cut(s) | 103, 395, 484 |
| Alw26I | GTCTC | 1 cut(s) | 194 |
| AlwI | GGATC | 2 cut(s) | 39, 162 |
| AoxI | GGCC | 2 cut(s) | 67, 203 |
| ApeKI | GCWGC | 2 cut(s) | 368, 491 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 56, 88 |
| AspS9I | GGNCC | 1 cut(s) | 464 |
| AsuHPI | GGTGA | 2 cut(s) | 110, 124 |
| AvaII | GGWCC | 1 cut(s) | 464 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 297, 329 |
| BauI | CACGAG | 1 cut(s) | 349 |
| BbvI | GCAGC | 2 cut(s) | 380, 503 |
| BccI | CCATC | 2 cut(s) | 49, 115 |
| BceAI | ACGGC | 1 cut(s) | 82 |
| BciT130I | CCWGG | 2 cut(s) | 91, 267 |
| BcoDI | GTCTC | 1 cut(s) | 194 |
| BisI | GCNGC | 2 cut(s) | 369, 492 |
| BlsI | GCNGC | 2 cut(s) | 370, 493 |
| Bme1390I | CCNGG | 2 cut(s) | 91, 267 |
| Bme18I | GGWCC | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 1 cut(s) | 464 |
| BmrFI | CCNGG | 2 cut(s) | 91, 267 |
| BmrI | ACTGGG | 1 cut(s) | 251 |
| BmsI | GCATC | 2 cut(s) | 59, 317 |
| BmuI | ACTGGG | 1 cut(s) | 251 |
| BpmI | CTGGAG | 1 cut(s) | 73 |
| Bpu10I | CCTNAGC | 1 cut(s) | 46 |
| BsaJI | CCNNGG | 2 cut(s) | 90, 176 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 90, 177 |
| Bse1I | ACTGG | 2 cut(s) | 171, 246 |
| BseBI | CCWGG | 2 cut(s) | 91, 267 |
| BseDI | CCNNGG | 2 cut(s) | 90, 176 |
| BseGI | GGATG | 3 cut(s) | 19, 41, 385 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 90, 177 |
| BseMII | CTCAG | 1 cut(s) | 333 |
| BseNI | ACTGG | 2 cut(s) | 171, 246 |
| BseXI | GCAGC | 2 cut(s) | 380, 503 |
| BshFI | GGCC | 2 cut(s) | 69, 205 |
| BslFI | GGGAC | 1 cut(s) | 107 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 90, 177 |
| BsmAI | GTCTC | 1 cut(s) | 194 |
| BsmFI | GGGAC | 1 cut(s) | 107 |
| BsnI | GGCC | 2 cut(s) | 69, 205 |
| Bsp143I | GATC | 3 cut(s) | 31, 167, 345 |
| BspACI | CCGC | 1 cut(s) | 149 |
| BspANI | GGCC | 2 cut(s) | 69, 205 |
| BspCNI | CTCAG | 1 cut(s) | 334 |
| BspPI | GGATC | 2 cut(s) | 39, 162 |
| BsrBI | CCGCTC | 1 cut(s) | 151 |
| BsrI | ACTGG | 2 cut(s) | 171, 246 |
| BssECI | CCNNGG | 2 cut(s) | 90, 176 |
| BssMI | GATC | 3 cut(s) | 31, 167, 345 |
| BssSI | CACGAG | 1 cut(s) | 349 |
| BssT1I | CCWWGG | 1 cut(s) | 176 |
| Bst2BI | CACGAG | 1 cut(s) | 349 |
| Bst2UI | CCWGG | 2 cut(s) | 91, 267 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 2 cut(s) | 143, 149 |
| BstC8I | GCNNGC | 2 cut(s) | 288, 393 |
| BstDEI | CTNAG | 2 cut(s) | 46, 342 |
| BstF5I | GGATG | 3 cut(s) | 19, 41, 385 |
| BstKTI | GATC | 3 cut(s) | 34, 170, 348 |
| BstMAI | GTCTC | 1 cut(s) | 194 |
| BstMBI | GATC | 3 cut(s) | 31, 167, 345 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 287, 338 |
| BstNI | CCWGG | 2 cut(s) | 91, 267 |
| BstSCI | CCNGG | 2 cut(s) | 89, 265 |
| BstV1I | GCAGC | 2 cut(s) | 380, 503 |
| BstX2I | RGATCY | 2 cut(s) | 31, 167 |
| BstYI | RGATCY | 2 cut(s) | 31, 167 |
| BsuRI | GGCC | 2 cut(s) | 69, 205 |
| BtsCI | GGATG | 3 cut(s) | 19, 41, 385 |
| BtsI | GCAGTG | 1 cut(s) | 194 |
| BtsIMutI | CAGTG | 1 cut(s) | 194 |
| Cac8I | GCNNGC | 2 cut(s) | 288, 393 |
| Cfr13I | GGNCC | 1 cut(s) | 464 |
| CviJI | RGCY | 8 cut(s) | 69, 103, 128, 205, 286, 332, 395, 484 |
| CviKI_1 | RGCY | 8 cut(s) | 69, 103, 128, 205, 286, 332, 395, 484 |
| DdeI | CTNAG | 2 cut(s) | 46, 342 |
| DpnI | GATC | 3 cut(s) | 33, 169, 347 |
| DpnII | GATC | 3 cut(s) | 31, 167, 345 |
| EaeI | YGGCCR | 1 cut(s) | 67 |
| Eam1104I | CTCTTC | 2 cut(s) | 143, 149 |
| EarI | CTCTTC | 2 cut(s) | 143, 149 |
| Eco130I | CCWWGG | 1 cut(s) | 176 |
| Eco32I | GATATC | 1 cut(s) | 505 |
| Eco47I | GGWCC | 1 cut(s) | 464 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| EcoRII | CCWGG | 2 cut(s) | 89, 265 |
| EcoRV | GATATC | 1 cut(s) | 505 |
| EcoT14I | CCWWGG | 1 cut(s) | 176 |
| ErhI | CCWWGG | 1 cut(s) | 176 |
| FaiI | YATR | 3 cut(s) | 237, 447, 452 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 321, 353 |
| FaqI | GGGAC | 1 cut(s) | 107 |
| FauI | CCCGC | 1 cut(s) | 156 |
| Fnu4HI | GCNGC | 2 cut(s) | 369, 492 |
| FokI | GGATG | 3 cut(s) | 26, 28, 392 |
| Fsp4HI | GCNGC | 2 cut(s) | 369, 492 |
| GluI | GCNGC | 2 cut(s) | 369, 492 |
| GsuI | CTGGAG | 1 cut(s) | 73 |
| HaeIII | GGCC | 2 cut(s) | 69, 205 |
| HinfI | GANTC | 1 cut(s) | 86 |
| HphI | GGTGA | 2 cut(s) | 110, 124 |
| Hpy188I | TCNGA | 5 cut(s) | 85, 117, 167, 322, 502 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 231, 349 |
| Hpy99I | CGWCG | 1 cut(s) | 68 |
| HpyAV | CCTTC | 2 cut(s) | 88, 139 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 281, 391, 445 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 287, 338 |
| HpyF3I | CTNAG | 2 cut(s) | 46, 342 |
| Kzo9I | GATC | 3 cut(s) | 31, 167, 345 |
| LmnI | GCTCC | 1 cut(s) | 43 |
| Lsp1109I | GCAGC | 2 cut(s) | 380, 503 |
| LweI | GCATC | 2 cut(s) | 59, 317 |
| MalI | GATC | 3 cut(s) | 33, 169, 347 |
| MbiI | CCGCTC | 1 cut(s) | 151 |
| MboI | GATC | 3 cut(s) | 31, 167, 345 |
| MboII | GAAGA | 4 cut(s) | 130, 130, 136, 193 |
| MfeI | CAATTG | 2 cut(s) | 386, 407 |
| MflI | RGATCY | 2 cut(s) | 31, 167 |
| MluCI | AATT | 4 cut(s) | 71, 184, 386, 407 |
| MlyI | GAGTC | 1 cut(s) | 80 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| MnlI | CCTC | 7 cut(s) | 146, 152, 168, 216, 343, 345, 355 |
| MseI | TTAA | 3 cut(s) | 18, 477, 523 |
| MspR9I | CCNGG | 2 cut(s) | 91, 267 |
| MunI | CAATTG | 2 cut(s) | 386, 407 |
| MvaI | CCWGG | 2 cut(s) | 91, 267 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 287, 338 |
| NdeII | GATC | 3 cut(s) | 31, 167, 345 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 177 |
| PfoI | TCCNGGA | 1 cut(s) | 265 |
| PkrI | GCNGC | 2 cut(s) | 370, 493 |
| PleI | GAGTC | 1 cut(s) | 80 |
| PpsI | GAGTC | 1 cut(s) | 80 |
| Psp6I | CCWGG | 2 cut(s) | 89, 265 |
| PspGI | CCWGG | 2 cut(s) | 89, 265 |
| PspPI | GGNCC | 1 cut(s) | 464 |
| PsuI | RGATCY | 2 cut(s) | 31, 167 |
| SaqAI | TTAA | 3 cut(s) | 18, 477, 523 |
| SatI | GCNGC | 2 cut(s) | 369, 492 |
| Sau3AI | GATC | 3 cut(s) | 31, 167, 345 |
| Sau96I | GGNCC | 1 cut(s) | 464 |
| SchI | GAGTC | 1 cut(s) | 80 |
| ScrFI | CCNGG | 2 cut(s) | 91, 267 |
| SetI | ASST | 6 cut(s) | 105, 356, 397, 469, 486, 523 |
| SfaNI | GCATC | 2 cut(s) | 59, 317 |
| SinI | GGWCC | 1 cut(s) | 464 |
| Sse9I | AATT | 4 cut(s) | 71, 184, 386, 407 |
| SsiI | CCGC | 1 cut(s) | 149 |
| StyD4I | CCNGG | 2 cut(s) | 89, 265 |
| StyI | CCWWGG | 1 cut(s) | 176 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TasI | AATT | 4 cut(s) | 71, 184, 386, 407 |
| Tru1I | TTAA | 3 cut(s) | 18, 477, 523 |
| Tru9I | TTAA | 3 cut(s) | 18, 477, 523 |
| TscAI | CASTG | 1 cut(s) | 201 |
| TseI | GCWGC | 2 cut(s) | 368, 491 |
| TspDTI | ATGAA | 1 cut(s) | 95 |
| TspGWI | ACGGA | 1 cut(s) | 101 |
| TspRI | CASTG | 1 cut(s) | 201 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 177 |
| VpaK11BI | GGWCC | 1 cut(s) | 464 |