Rmu_sc0004015.1_g000022

Domain of unknown function (DUF4216)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004015.1
OG0000040
Physical Location & Seq
Forward (+)
84119 .. 88278
4160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004015.1_g000022.1.cds

Sequence Viewer

Length: 1002 bp
ctgctctatgattggggacctaactccattgctgtagaaaagctcattgaggattcttatttgatctggagtgggagttcacctagtactgctccgcctgcaaagcatgttagcactactcccggctgctttgttgcttcctccatcctcggtctcaaacatgaccgcgctctttctcactctcgcccaacacatcaccctctttctgagctccggaacctcaccgttccagttgttctaaacattctgataatcgaatcttcttctcaccatcagcttacaggtgactctttcattttcagcttttggtataatttcgctcttggttgtattcatgttctgattttggctctctcctcgaacgggaacctaccgaggtatttgggcaatggtgtgcaggccctcttctcctataaagtaatcatcaaggtcaagaacttggaaaacacaagtactgcagctgtgcctttagaaatcagtgtgttagcaaaaggacctagtgatcaagcagtgaagtttaattcatataaagtgaacggatacaactttcctgttaaaaaacttgatgatcaaaaggaaacacagaatagtggtgtaactttgaagtcaggtaccatgagtgttgctagtcggaatgacaagcatcctcgtgttgatcctttggcttactatggacaattgattgatattgtcaaaatcagttacttagaagatttaaaatttgacttgtttaagtgtggttggattgacactgcattagggacaaaacatgactgttttgagtacactttggtcaactttaagcatttgttgtacaaacatgatcgagtgggtaatgaacctttcattttggcatcccaagcacatcaagtttattatgttcctgatccattggagaaagattggttaactgttgtcatatcccctgcaatagagttatctgatgctgatggttgccctgaagctgacccatatatgttgctggaagttgatgaaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216

Protein Analysis

333

Amino Acids

37.03

Weight (kDa)

5.89

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000040)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00150 FvH4_2g13531 FvH4_2g21543 FvH4_3g32800 FvH4_3g32802 FvH4_4g00091 FvH4_4g00092 FvH4_5g22070 FvH4_5g31391 FvH4_6g11351 FvH4_6g23430 FvH4_6g23672 FvH4_6g52753
malus_domestica MD03G1101500.v1.1 MD08G1234800.v1.1
pyrus_communis pycom07g24860 pycom09g07860 pycom10g09330 pycom10g15360 pycom11g01600 pycom11g13460 pycom13g15580
rosa_chinensis RchiOBHm_Chr1g0332021 RchiOBHm_Chr2g0095801 RchiOBHm_Chr2g0111771 RchiOBHm_Chr2g0127541 RchiOBHm_Chr2g0136581 RchiOBHm_Chr2g0136591 RchiOBHm_Chr2g0143311 RchiOBHm_Chr2g0145131 RchiOBHm_Chr2g0151391 RchiOBHm_Chr3g0468771 RchiOBHm_Chr3g0473281 RchiOBHm_Chr3g0481961 RchiOBHm_Chr4g0393741 RchiOBHm_Chr4g0397391 RchiOBHm_Chr4g0435991 RchiOBHm_Chr5g0015951 RchiOBHm_Chr5g0016651 RchiOBHm_Chr5g0039191 RchiOBHm_Chr5g0039211 RchiOBHm_Chr6g0254441 RchiOBHm_Chr6g0260911 RchiOBHm_Chr6g0274501 RchiOBHm_Chr6g0274511 RchiOBHm_Chr7g0184951 RchiOBHm_Chr7g0201701 RchiOBHm_Chr7g0201721 RchiOBHm_Chr7g0201731 RchiOBHm_Chr7g0234921 RchiOBHm_Chr7g0237841
rosa_laevigata RLG00000001204 RLG00000001230 RLG00000001341 RLG00000001513 RLG00000001971 RLG00000002177 RLG00000002360 RLG00000003112 RLG00000003130 RLG00000003854 RLG00000008209 RLG00000008322 RLG00000008412 RLG00000008524 RLG00000009491 RLG00000009908 RLG00000011823 RLG00000013252 RLG00000013782 RLG00000013944 RLG00000014480 RLG00000019084 RLG00000019544 RLG00000019751 RLG00000020093 RLG00000020094 RLG00000020551 RLG00000020838 RLG00000020982 RLG00000021059 RLG00000022067 RLG00000022604 RLG00000022632 RLG00000022849 RLG00000023962 RLG00000025767 RLG00000026838 RLG00000027291 RLG00000028131 RLG00000028210 RLG00000028834 RLG00000030169 RLG00000031271 RLG00000032327 RLG00000033996 RLG00000034546 RLG00000034654 RLG00000034810 RLG00000035087 RLG00000036782
rosa_multiflora Rmu_co8330487.1_g000001 Rmu_co8359977.1_g000001 Rmu_co8445341.1_g000001 Rmu_sc0000141.1_g000003 Rmu_sc0000353.1_g000018 Rmu_sc0000740.1_g000017 Rmu_sc0000744.1_g000138 Rmu_sc0000813.1_g000014 Rmu_sc0000908.1_g000003 Rmu_sc0000999.1_g000014 Rmu_sc0001103.1_g000001 Rmu_sc0001248.1_g000013 Rmu_sc0001282.1_g000021 Rmu_sc0001293.1_g000018 Rmu_sc0001608.1_g000015 Rmu_sc0001616.1_g000060 Rmu_sc0001851.1_g000013 Rmu_sc0001990.1_g000003 Rmu_sc0002138.1_g000002 Rmu_sc0002200.1_g000021 Rmu_sc0002230.1_g000029 Rmu_sc0002230.1_g000030 Rmu_sc0002702.1_g000017 Rmu_sc0002806.1_g000010 Rmu_sc0002809.1_g000023 Rmu_sc0002869.1_g000005 Rmu_sc0003156.1_g000027 Rmu_sc0003368.1_g000018 Rmu_sc0003642.1_g000007 Rmu_sc0003653.1_g000004 Rmu_sc0003791.1_g000008 Rmu_sc0003804.1_g000013 Rmu_sc0004015.1_g000022 Rmu_sc0004230.1_g000017 Rmu_sc0004368.1_g000011 Rmu_sc0004529.1_g000011 Rmu_sc0004540.1_g000011 Rmu_sc0005008.1_g000014 Rmu_sc0005171.1_g000001 Rmu_sc0005212.1_g000013 Rmu_sc0005947.1_g000003 Rmu_sc0006317.1_g000026 Rmu_sc0006578.1_g000005 Rmu_sc0006993.1_g000001 Rmu_sc0007442.1_g000002 Rmu_sc0007442.1_g000004 Rmu_sc0007876.1_g000004 Rmu_sc0007876.1_g000005 Rmu_sc0009624.1_g000004 Rmu_sc0009742.1_g000005 Rmu_sc0010306.1_g000007 Rmu_sc0011745.1_g000008 Rmu_sc0011800.1_g000003 Rmu_sc0012369.1_g000003 Rmu_sc0012787.1_g000003 Rmu_sc0012989.1_g000001 Rmu_sc0013416.1_g000003 Rmu_sc0021155.1_g000001 Rmu_sc0022372.1_g000001 Rmu_sc0023106.1_g000001 Rmu_sc0023684.1_g000003 Rmu_sc0023684.1_g000004 Rmu_sc0026897.1_g000001 Rmu_sc0027278.1_g000001 Rmu_sc0028533.1_g000001 Rmu_sc0028533.1_g000003 Rmu_sc0038440.1_g000001
rosa_roxburghii Rroxscaffold_1G00031730 Rroxscaffold_1G00033690 Rroxscaffold_1G00073100 Rroxscaffold_2G00079640 Rroxscaffold_2G00089760 Rroxscaffold_2G00091520 Rroxscaffold_2G00112420 Rroxscaffold_2G00115720 Rroxscaffold_2G00116170 Rroxscaffold_2G00116180 Rroxscaffold_2G00152590 Rroxscaffold_2G00155940 Rroxscaffold_3G00220010 Rroxscaffold_3G00234940 Rroxscaffold_3G00235250 Rroxscaffold_3G00237510 Rroxscaffold_3G00250950 Rroxscaffold_3G00250960 Rroxscaffold_3G00262030 Rroxscaffold_4G00299560 Rroxscaffold_4G00306000 Rroxscaffold_4G00311350 Rroxscaffold_4G00318530 Rroxscaffold_4G00329140 Rroxscaffold_5G00342020 Rroxscaffold_5G00350770 Rroxscaffold_5G00354620 Rroxscaffold_5G00354630 Rroxscaffold_5G00361180 Rroxscaffold_5G00377270 Rroxscaffold_6G00397870 Rroxscaffold_6G00397960 Rroxscaffold_6G00407290 Rroxscaffold_6G00408690 Rroxscaffold_6G00421900 Rroxscaffold_6G00421910 Rroxscaffold_7G00181630 Rroxscaffold_7G00182330 Rroxscaffold_7G00182340 Rroxscaffold_7G00212590 Rroxscaffold_7G00214060 Rroxscaffold_7G00214070 Rroxscaffold_7G00215940
rosa_rugosa Rorug01G0052800 Rorug01G0052800 Rorug01G0075200 Rorug01G0090500 Rorug01G0091500 Rorug01G0106000 Rorug01G0309300 Rorug01G0309400.1 Rorug02G0092000 Rorug02G0128200 Rorug02G0152800 Rorug02G0366100 Rorug02G0401500 Rorug02G0465600 Rorug02G0474400 Rorug03G0322500 Rorug04G0044000 Rorug04G0044100 Rorug04G0064800.1 Rorug04G0077400 Rorug04G0094800 Rorug04G0094800 Rorug04G0111400 Rorug04G0137800 Rorug04G0137900 Rorug04G0138000 Rorug04G0138000 Rorug04G0446200 Rorug05G0090600 Rorug05G0239900 Rorug05G0284400 Rorug05G0534400 Rorug05G0561600 Rorug06G0098100 Rorug06G0098100 Rorug06G0134500 Rorug06G0238500 Rorug06G0238600 Rorug07G0228900 Rorug07G0229000 Rorug07G0291600 Rorug07G0291700
rosa_samantha Rh1AG082200 Rh1AG129200 Rh1AG131500 Rh1AG159900 Rh1AG330800 Rh1AG408400 Rh1BG089600 Rh1CG086000 Rh1CG149200 Rh1CG405600 Rh1DG008200 Rh1DG015800 Rh1DG068000 Rh1DG118400 Rh1DG122500 Rh1DG202400 Rh1DG202500 Rh1DG266300 Rh1DG266400 Rh1DG287400 Rh1DG314700 Rh1DG314800 Rh2AG128400 Rh2AG128500 Rh2AG291000 Rh2AG347900 Rh2AG350700 Rh2AG415100 Rh2AG417200 Rh2AG497700 Rh2AG505000 Rh2AG507600 Rh2BG131300 Rh2BG233900 Rh2BG291700 Rh2BG291800 Rh2BG302700 Rh2BG302800 Rh2BG334700 Rh2BG334900 Rh2BG347000 Rh2BG347800 Rh2BG357100 Rh2BG528200 Rh2BG528300 Rh2BG603700 Rh2CG032300 Rh2CG034300 Rh2CG232600 Rh2CG483700 Rh2DG077400 Rh2DG103100 Rh2DG103200 Rh2DG287000 Rh2DG287200 Rh2DG375000 Rh2DG382700 Rh2DG537400 Rh2DG602900 Rh2DG603000 Rh3AG080800 Rh3AG217300 Rh3AG321800 Rh3BG082700 Rh3BG082800 Rh3BG168600 Rh3BG185900 Rh3BG224400 Rh3BG250500 Rh3BG260700 Rh3BG351300 Rh3BG353600 Rh3BG353700 Rh3CG082900 Rh3CG083000 Rh3CG176200 Rh3CG176300 Rh3CG219400 Rh3CG219500 Rh3CG254600 Rh3CG254700 Rh3CG256000 Rh3CG256100 Rh3CG257400 Rh3CG356200 Rh3CG356300 Rh3DG084300 Rh4AG030500 Rh4BG132300 Rh4BG139800 Rh4BG140000 Rh4CG027200 Rh4CG033100 Rh4CG033200 Rh4CG069600 Rh4CG103300 Rh4CG322600 Rh4DG028500 Rh4DG081000 Rh4DG190200 Rh4DG193500 Rh4DG212900 Rh4DG303900 Rh4DG342900 Rh5AG131000 Rh5AG166800 Rh5AG167000 Rh5AG201600 Rh5AG372200 Rh5AG372300 Rh5AG417900 Rh5BG082500 Rh5BG171200 Rh5BG171300 Rh5BG180300 Rh5BG194400 Rh5BG302800 Rh5BG343300 Rh5BG402700 Rh5BG428500 Rh5CG190700 Rh5CG190800 Rh5CG219100 Rh5CG451900 Rh5DG175200 Rh5DG175400 Rh5DG177000 Rh5DG177100 Rh5DG356000 Rh5DG356100 Rh5DG493500 Rh6AG006700 Rh6AG051700 Rh6AG064100 Rh6AG064200 Rh6AG064500 Rh6AG092800 Rh6AG152000 Rh6AG152100 Rh6AG291900 Rh6AG419000 Rh6AG465900 Rh6AG466000 Rh6BG125000 Rh6BG160600 Rh6BG161800 Rh6BG359100 Rh6BG359200 Rh6CG071400 Rh6CG071500 Rh6CG103500 Rh6CG103600 Rh6CG117200 Rh6CG123700 Rh6CG123800 Rh6CG156600 Rh6CG192500 Rh6CG208600 Rh6CG208700 Rh6CG365200 Rh6DG146200 Rh6DG146800 Rh6DG193200 Rh6DG193300 Rh6DG193400 Rh6DG349200 Rh7AG251100 Rh7AG259300 Rh7AG425100 Rh7BG262700 Rh7BG262900 Rh7BG369500 Rh7CG107400 Rh7CG107500 Rh7CG257400 Rh7CG267300 Rh7DG070500 Rh7DG105000 Rh7DG198500 Rh7DG291300 Rh7DG480600
rosa_wichuraiana Rw2G027920 Rw3G014750 Rw3G021490 Rw4G001910 Rw6G013120 Rw6G020040 Rw6G022930 Rw6G041900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 611
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 213
AciI CCGC 2 cut(s) 95, 166
AclWI GGATC 2 cut(s) 650, 881
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 1 cut(s) 981
AfaI GTAC 5 cut(s) 88, 454, 613, 785, 815
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 1 cut(s) 604
AloI GAACNNNNNNTCC 2 cut(s) 61, 93
AluBI AGCT 6 cut(s) 43, 211, 277, 303, 461, 965
AluI AGCT 6 cut(s) 43, 211, 277, 303, 461, 965
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 2 cut(s) 650, 881
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 2 cut(s) 126, 458
ApoI RAATTY 1 cut(s) 719
Asp718I GGTACC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 17, 400, 494
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 5 cut(s) 72, 188, 214, 260, 296
AvaII GGWCC 2 cut(s) 17, 494
BanI GGYRCC 1 cut(s) 611
BanII GRGCYC 1 cut(s) 213
BauI CACGAG 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 113, 470
BccI CCATC 3 cut(s) 152, 279, 944
BciVI GTATCC 1 cut(s) 533
BclI TGATCA 2 cut(s) 502, 568
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 3 cut(s) 84, 498, 627
BfmI CTRYAG 2 cut(s) 33, 456
BfuI GTATCC 1 cut(s) 533
BisI GCNGC 2 cut(s) 127, 459
BlsI GCNGC 2 cut(s) 128, 460
BmcAI AGTACT 2 cut(s) 88, 454
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 2 cut(s) 17, 494
BmgT120I GGNCC 3 cut(s) 17, 400, 494
BmiI GGNNCC 4 cut(s) 18, 218, 368, 613
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 652, 863, 934
BpmI CTGGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 148, 374
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 2 cut(s) 27, 394
BseAI TCCGGA 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 148, 374
BseGI GGATG 3 cut(s) 144, 643, 854
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMI GCAATG 2 cut(s) 27, 394
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 2 cut(s) 113, 470
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 2 cut(s) 123, 214
BslFI GGGAC 2 cut(s) 30, 775
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 30, 775
BsnI GGCC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 213
Bsp13I TCCGGA 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 6 cut(s) 63, 502, 568, 655, 823, 886
BspACI CCGC 2 cut(s) 95, 166
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 199
BspEI TCCGGA 1 cut(s) 213
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 4 cut(s) 18, 218, 368, 613
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 2 cut(s) 650, 881
BspT107I GGYRCC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 27, 394
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 148, 374
BssMI GATC 6 cut(s) 63, 502, 568, 655, 823, 886
BssSI CACGAG 1 cut(s) 648
Bst2BI CACGAG 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 226, 776, 913
Bst6I CTCTTC 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 813
BstC8I GCNNGC 2 cut(s) 99, 399
BstDEI CTNAG 2 cut(s) 207, 706
BstF5I GGATG 3 cut(s) 144, 643, 854
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 6 cut(s) 66, 505, 571, 658, 826, 889
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 6 cut(s) 63, 502, 568, 655, 823, 886
BstMWI GCNNNNNNNGC 3 cut(s) 98, 103, 860
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 2 cut(s) 33, 456
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 113, 470
BsuI GTATCC 1 cut(s) 533
BsuRI GGCC 1 cut(s) 401
BtsCI GGATG 3 cut(s) 144, 643, 854
BtsI GCAGTG 2 cut(s) 516, 750
BtsIMutI CAGTG 3 cut(s) 484, 516, 750
Cac8I GCNNGC 2 cut(s) 99, 399
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 17, 400, 494
Csp6I GTAC 5 cut(s) 87, 453, 612, 784, 814
CviAII CATG 6 cut(s) 107, 161, 335, 616, 770, 821
CviQI GTAC 5 cut(s) 87, 453, 612, 784, 814
DdeI CTNAG 2 cut(s) 207, 706
DpnI GATC 6 cut(s) 65, 504, 570, 657, 825, 888
DpnII GATC 6 cut(s) 63, 502, 568, 655, 823, 886
DraI TTTAAA 1 cut(s) 717
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
EciI GGCGGA 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 17, 494
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 981
EcoICRI GAGCTC 1 cut(s) 211
EcoO109I RGGNCCY 3 cut(s) 17, 400, 494
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 6 cut(s) 110, 164, 338, 619, 773, 824
FaqI GGGAC 2 cut(s) 30, 775
FatI CATG 6 cut(s) 106, 160, 334, 615, 769, 820
FbaI TGATCA 2 cut(s) 502, 568
Fnu4HI GCNGC 2 cut(s) 127, 459
FokI GGATG 3 cut(s) 131, 630, 841
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 127, 459
FspBI CTAG 3 cut(s) 84, 498, 627
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 127, 459
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 401
HapII CCGG 2 cut(s) 123, 214
HhaI GCGC 1 cut(s) 170
Hin1II CATG 6 cut(s) 110, 164, 338, 619, 773, 824
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 2 cut(s) 796, 909
HindII GTYRAC 2 cut(s) 796, 909
HinfI GANTC 3 cut(s) 53, 257, 287
HpaI GTTAAC 1 cut(s) 909
HpaII CCGG 2 cut(s) 123, 214
HphI GGTGA 5 cut(s) 72, 188, 214, 260, 296
Hpy166II GTNNAC 5 cut(s) 80, 535, 786, 796, 909
Hpy188I TCNGA 5 cut(s) 208, 249, 342, 633, 943
Hpy188III TCNNGA 4 cut(s) 67, 214, 433, 884
Hpy8I GTNNAC 5 cut(s) 80, 535, 786, 796, 909
HpyCH4III ACNGT 3 cut(s) 226, 776, 913
HpyCH4V TGCA 5 cut(s) 101, 397, 458, 755, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 103, 860
HpyF3I CTNAG 2 cut(s) 207, 706
Hsp92II CATG 6 cut(s) 110, 164, 338, 619, 773, 824
HspAI GCGC 1 cut(s) 168
Kpn2I TCCGGA 1 cut(s) 213
KpnI GGTACC 1 cut(s) 615
Ksp22I TGATCA 2 cut(s) 502, 568
KspAI GTTAAC 1 cut(s) 909
Kzo9I GATC 6 cut(s) 63, 502, 568, 655, 823, 886
LmnI GCTCC 2 cut(s) 97, 216
Lsp1109I GCAGC 2 cut(s) 113, 470
LweI GCATC 3 cut(s) 652, 863, 934
MaeI CTAG 3 cut(s) 84, 498, 627
MaeIII GTNAC 3 cut(s) 284, 595, 701
MalI GATC 6 cut(s) 65, 504, 570, 657, 825, 888
MboI GATC 6 cut(s) 63, 502, 568, 655, 823, 886
MboII GAAGA 4 cut(s) 252, 255, 397, 722
MfeI CAATTG 1 cut(s) 677
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 5 cut(s) 313, 520, 677, 719, 997
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 611, 722
MnlI CCTC 9 cut(s) 43, 151, 158, 210, 230, 367, 369, 413, 657
MroI TCCGGA 1 cut(s) 213
MseI TTAA 6 cut(s) 519, 555, 716, 732, 801, 908
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 123, 214
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 677
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 98, 103, 860
NciI CCSGG 1 cut(s) 123
NdeII GATC 6 cut(s) 63, 502, 568, 655, 823, 886
NlaIII CATG 6 cut(s) 110, 164, 338, 619, 773, 824
NlaIV GGNNCC 4 cut(s) 18, 218, 368, 613
NmuCI GTSAC 1 cut(s) 284
NspI RCATGY 1 cut(s) 110
PfeI GAWTC 2 cut(s) 53, 257
PkrI GCNGC 2 cut(s) 128, 460
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PpuMI RGGWCCY 2 cut(s) 17, 494
Psp124BI GAGCTC 1 cut(s) 213
Psp5II RGGWCCY 2 cut(s) 17, 494
PspN4I GGNNCC 4 cut(s) 18, 218, 368, 613
PspPI GGNCC 3 cut(s) 17, 400, 494
PspPPI RGGWCCY 2 cut(s) 17, 494
PstI CTGCAG 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 5 cut(s) 88, 454, 613, 785, 815
RsaNI GTAC 5 cut(s) 87, 453, 612, 784, 814
RseI CAYNNNNRTG 1 cut(s) 648
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 6 cut(s) 519, 555, 716, 732, 801, 908
SatI GCNGC 2 cut(s) 127, 459
Sau3AI GATC 6 cut(s) 63, 502, 568, 655, 823, 886
Sau96I GGNCC 3 cut(s) 17, 400, 494
ScaI AGTACT 2 cut(s) 88, 454
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 3 cut(s) 652, 863, 934
SfcI CTRYAG 2 cut(s) 33, 456
SinI GGWCC 2 cut(s) 17, 494
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 5 cut(s) 313, 520, 677, 719, 997
SsiI CCGC 2 cut(s) 95, 166
SspMI CTAG 3 cut(s) 84, 498, 627
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 3 cut(s) 226, 776, 913
TaqI TCGA 3 cut(s) 255, 359, 826
TaqII GACCGA 1 cut(s) 140
TasI AATT 5 cut(s) 313, 520, 677, 719, 997
TatI WGTACW 4 cut(s) 86, 452, 783, 813
TfiI GAWTC 2 cut(s) 53, 257
Tru1I TTAA 6 cut(s) 519, 555, 716, 732, 801, 908
Tru9I TTAA 6 cut(s) 519, 555, 716, 732, 801, 908
TscAI CASTG 3 cut(s) 484, 516, 757
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 2 cut(s) 126, 458
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 5 cut(s) 283, 323, 513, 835, 852
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 3 cut(s) 484, 516, 757
VpaK11BI GGWCC 2 cut(s) 17, 494
XapI RAATTY 1 cut(s) 719
XceI RCATGY 1 cut(s) 110
XspI CTAG 3 cut(s) 84, 498, 627
ZrmI AGTACT 2 cut(s) 88, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.