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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 89, 482 |
| AccII | CGCG | 1 cut(s) | 29 |
| AciI | CCGC | 8 cut(s) | 15, 29, 43, 87, 95, 321, 482, 492 |
| AcoI | YGGCCR | 1 cut(s) | 84 |
| AfaI | GTAC | 4 cut(s) | 5, 196, 212, 342 |
| AfeI | AGCGCT | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 150, 469 |
| AflIII | ACRYGT | 1 cut(s) | 137 |
| AgsI | TTSAA | 1 cut(s) | 536 |
| AjiI | CACGTC | 1 cut(s) | 138 |
| AluBI | AGCT | 2 cut(s) | 80, 239 |
| AluI | AGCT | 2 cut(s) | 80, 239 |
| Alw26I | GTCTC | 1 cut(s) | 128 |
| Aor51HI | AGCGCT | 1 cut(s) | 127 |
| AoxI | GGCC | 2 cut(s) | 53, 84 |
| ApeKI | GCWGC | 2 cut(s) | 239, 353 |
| AspLEI | GCGC | 1 cut(s) | 128 |
| AspS9I | GGNCC | 1 cut(s) | 54 |
| AsuC2I | CCSGG | 1 cut(s) | 52 |
| AsuNHI | GCTAGC | 1 cut(s) | 65 |
| BbsI | GAAGAC | 1 cut(s) | 178 |
| BbvI | GCAGC | 2 cut(s) | 226, 340 |
| BclI | TGATCA | 1 cut(s) | 376 |
| BcnI | CCSGG | 1 cut(s) | 52 |
| BcoDI | GTCTC | 1 cut(s) | 128 |
| BfaI | CTAG | 1 cut(s) | 66 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 5 cut(s) | 87, 96, 240, 354, 493 |
| BlsI | GCNGC | 5 cut(s) | 88, 97, 241, 355, 494 |
| Bme1390I | CCNGG | 1 cut(s) | 52 |
| BmgBI | CACGTC | 1 cut(s) | 138 |
| BmgT120I | GGNCC | 1 cut(s) | 54 |
| BmrFI | CCNGG | 1 cut(s) | 52 |
| BmsI | GCATC | 3 cut(s) | 259, 365, 376 |
| BmtI | GCTAGC | 1 cut(s) | 69 |
| BpiI | GAAGAC | 1 cut(s) | 178 |
| BpuMI | CCSGG | 1 cut(s) | 52 |
| Bsa29I | ATCGAT | 1 cut(s) | 118 |
| BsaAI | YACGTR | 1 cut(s) | 214 |
| BsaJI | CCNNGG | 1 cut(s) | 311 |
| BsaWI | WCCGGW | 1 cut(s) | 143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 471, 501 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 150, 469 |
| Bse1I | ACTGG | 1 cut(s) | 202 |
| BseCI | ATCGAT | 1 cut(s) | 118 |
| BseDI | CCNNGG | 1 cut(s) | 311 |
| BseGI | GGATG | 2 cut(s) | 250, 321 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 150, 469 |
| BseNI | ACTGG | 1 cut(s) | 202 |
| BseX3I | CGGCCG | 1 cut(s) | 84 |
| BseXI | GCAGC | 2 cut(s) | 226, 340 |
| BseYI | CCCAGC | 1 cut(s) | 323 |
| Bsh1236I | CGCG | 1 cut(s) | 29 |
| Bsh1285I | CGRYCG | 2 cut(s) | 87, 122 |
| BshFI | GGCC | 2 cut(s) | 55, 86 |
| BshVI | ATCGAT | 1 cut(s) | 118 |
| BsiEI | CGRYCG | 2 cut(s) | 87, 122 |
| BsiSI | CCGG | 3 cut(s) | 52, 92, 144 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 150, 469 |
| BsmAI | GTCTC | 1 cut(s) | 128 |
| BsmBI | CGTCTC | 1 cut(s) | 128 |
| BsnI | GGCC | 2 cut(s) | 55, 86 |
| Bsp1407I | TGTACA | 1 cut(s) | 340 |
| Bsp143I | GATC | 3 cut(s) | 112, 119, 376 |
| BspACI | CCGC | 8 cut(s) | 15, 29, 43, 87, 95, 321, 482, 492 |
| BspANI | GGCC | 2 cut(s) | 55, 86 |
| BspDI | ATCGAT | 1 cut(s) | 118 |
| BspFNI | CGCG | 1 cut(s) | 29 |
| BspMAI | CTGCAG | 1 cut(s) | 244 |
| BspOI | GCTAGC | 1 cut(s) | 69 |
| BsrBI | CCGCTC | 2 cut(s) | 89, 482 |
| BsrGI | TGTACA | 1 cut(s) | 340 |
| BsrI | ACTGG | 1 cut(s) | 202 |
| BssECI | CCNNGG | 1 cut(s) | 311 |
| BssMI | GATC | 3 cut(s) | 112, 119, 376 |
| Bst4CI | ACNGT | 1 cut(s) | 340 |
| BstAUI | TGTACA | 1 cut(s) | 340 |
| BstBAI | YACGTR | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 2 cut(s) | 17, 67 |
| BstDSI | CCRYGG | 1 cut(s) | 311 |
| BstF5I | GGATG | 2 cut(s) | 250, 321 |
| BstFNI | CGCG | 1 cut(s) | 29 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 1 cut(s) | 128 |
| BstKTI | GATC | 3 cut(s) | 115, 122, 379 |
| BstMAI | GTCTC | 1 cut(s) | 128 |
| BstMBI | GATC | 3 cut(s) | 112, 119, 376 |
| BstMCI | CGRYCG | 2 cut(s) | 87, 122 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 86, 92, 95, 269, 406 |
| BstSCI | CCNGG | 1 cut(s) | 50 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstUI | CGCG | 1 cut(s) | 29 |
| BstV1I | GCAGC | 2 cut(s) | 226, 340 |
| BstV2I | GAAGAC | 1 cut(s) | 178 |
| BstZI | CGGCCG | 1 cut(s) | 84 |
| Bsu15I | ATCGAT | 1 cut(s) | 118 |
| BsuRI | GGCC | 2 cut(s) | 55, 86 |
| BsuTUI | ATCGAT | 1 cut(s) | 118 |
| BtgI | CCRYGG | 1 cut(s) | 311 |
| BtrI | CACGTC | 1 cut(s) | 138 |
| BtsCI | GGATG | 2 cut(s) | 250, 321 |
| BtsI | GCAGTG | 1 cut(s) | 249 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| Cac8I | GCNNGC | 2 cut(s) | 17, 67 |
| CfoI | GCGC | 1 cut(s) | 128 |
| Cfr13I | GGNCC | 1 cut(s) | 54 |
| ClaI | ATCGAT | 1 cut(s) | 118 |
| Csp6I | GTAC | 4 cut(s) | 4, 195, 211, 341 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 524 |
| CviJI | RGCY | 8 cut(s) | 55, 65, 80, 86, 98, 164, 239, 310 |
| CviKI_1 | RGCY | 8 cut(s) | 55, 65, 80, 86, 98, 164, 239, 310 |
| CviQI | GTAC | 4 cut(s) | 4, 195, 211, 341 |
| DpnI | GATC | 3 cut(s) | 114, 121, 378 |
| DpnII | GATC | 3 cut(s) | 112, 119, 376 |
| EaeI | YGGCCR | 1 cut(s) | 84 |
| EagI | CGGCCG | 1 cut(s) | 84 |
| EclXI | CGGCCG | 1 cut(s) | 84 |
| Eco32I | GATATC | 1 cut(s) | 426 |
| Eco47III | AGCGCT | 1 cut(s) | 127 |
| Eco52I | CGGCCG | 1 cut(s) | 84 |
| EcoRV | GATATC | 1 cut(s) | 426 |
| Esp3I | CGTCTC | 1 cut(s) | 128 |
| FaiI | YATR | 5 cut(s) | 386, 431, 507, 509, 515 |
| FauI | CCCGC | 2 cut(s) | 8, 475 |
| FauNDI | CATATG | 1 cut(s) | 507 |
| FbaI | TGATCA | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 5 cut(s) | 87, 96, 240, 354, 493 |
| FokI | GGATG | 2 cut(s) | 237, 328 |
| Fsp4HI | GCNGC | 5 cut(s) | 87, 96, 240, 354, 493 |
| FspBI | CTAG | 1 cut(s) | 66 |
| GlaI | GCGC | 1 cut(s) | 127 |
| GluI | GCNGC | 5 cut(s) | 87, 96, 240, 354, 493 |
| GsaI | CCCAGC | 1 cut(s) | 327 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HaeIII | GGCC | 2 cut(s) | 55, 86 |
| HapII | CCGG | 3 cut(s) | 52, 92, 144 |
| HhaI | GCGC | 1 cut(s) | 128 |
| Hin6I | GCGC | 1 cut(s) | 126 |
| HinP1I | GCGC | 1 cut(s) | 126 |
| HincII | GTYRAC | 1 cut(s) | 336 |
| HindII | GTYRAC | 1 cut(s) | 336 |
| HindIII | AAGCTT | 1 cut(s) | 78 |
| HinfI | GANTC | 3 cut(s) | 107, 184, 232 |
| HpaI | GTTAAC | 1 cut(s) | 336 |
| HpaII | CCGG | 3 cut(s) | 52, 92, 144 |
| Hpy166II | GTNNAC | 1 cut(s) | 336 |
| Hpy188I | TCNGA | 1 cut(s) | 112 |
| Hpy8I | GTNNAC | 1 cut(s) | 336 |
| HpyAV | CCTTC | 1 cut(s) | 463 |
| HpyCH4III | ACNGT | 1 cut(s) | 340 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 137, 213 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 356 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 86, 92, 95, 269, 406 |
| HpySE526I | ACGT | 3 cut(s) | 6, 137, 213 |
| HspAI | GCGC | 1 cut(s) | 126 |
| Ksp22I | TGATCA | 1 cut(s) | 376 |
| KspAI | GTTAAC | 1 cut(s) | 336 |
| Kzo9I | GATC | 3 cut(s) | 112, 119, 376 |
| LmnI | GCTCC | 3 cut(s) | 31, 94, 479 |
| LpnPI | CCDG | 8 cut(s) | 65, 87, 105, 150, 157, 183, 254, 309 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 340 |
| LweI | GCATC | 3 cut(s) | 259, 365, 376 |
| MaeI | CTAG | 1 cut(s) | 66 |
| MaeII | ACGT | 3 cut(s) | 6, 137, 213 |
| MaeIII | GTNAC | 3 cut(s) | 214, 290, 458 |
| MalI | GATC | 3 cut(s) | 114, 121, 378 |
| MbiI | CCGCTC | 2 cut(s) | 89, 482 |
| MboI | GATC | 3 cut(s) | 112, 119, 376 |
| MboII | GAAGA | 2 cut(s) | 183, 433 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MluCI | AATT | 3 cut(s) | 20, 36, 410 |
| MlyI | GAGTC | 2 cut(s) | 101, 241 |
| MmeI | TCCRAC | 1 cut(s) | 131 |
| MnlI | CCTC | 4 cut(s) | 67, 390, 430, 520 |
| MseI | TTAA | 2 cut(s) | 335, 393 |
| MspA1I | CMGCKG | 2 cut(s) | 15, 323 |
| MspI | CCGG | 3 cut(s) | 52, 92, 144 |
| MspR9I | CCNGG | 1 cut(s) | 52 |
| MunI | CAATTG | 1 cut(s) | 410 |
| MvnI | CGCG | 1 cut(s) | 29 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 86, 92, 95, 269, 406 |
| NciI | CCSGG | 1 cut(s) | 52 |
| NdeI | CATATG | 1 cut(s) | 507 |
| NdeII | GATC | 3 cut(s) | 112, 119, 376 |
| NheI | GCTAGC | 1 cut(s) | 65 |
| NmuCI | GTSAC | 2 cut(s) | 214, 290 |
| PfeI | GAWTC | 1 cut(s) | 184 |
| PkrI | GCNGC | 5 cut(s) | 88, 97, 241, 355, 494 |
| Ple19I | CGATCG | 1 cut(s) | 122 |
| PleI | GAGTC | 2 cut(s) | 101, 240 |
| PpsI | GAGTC | 2 cut(s) | 101, 240 |
| Ppu21I | YACGTR | 1 cut(s) | 214 |
| PspFI | CCCAGC | 1 cut(s) | 323 |
| PspPI | GGNCC | 1 cut(s) | 54 |
| PstI | CTGCAG | 1 cut(s) | 244 |
| PvuI | CGATCG | 1 cut(s) | 122 |
| RsaI | GTAC | 4 cut(s) | 5, 196, 212, 342 |
| RsaNI | GTAC | 4 cut(s) | 4, 195, 211, 341 |
| SaqAI | TTAA | 2 cut(s) | 335, 393 |
| SatI | GCNGC | 5 cut(s) | 87, 96, 240, 354, 493 |
| Sau3AI | GATC | 3 cut(s) | 112, 119, 376 |
| Sau96I | GGNCC | 1 cut(s) | 54 |
| SchI | GAGTC | 2 cut(s) | 101, 241 |
| ScrFI | CCNGG | 1 cut(s) | 52 |
| SetI | ASST | 7 cut(s) | 9, 82, 140, 216, 241, 441, 531 |
| SfaNI | GCATC | 3 cut(s) | 259, 365, 376 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| Sse9I | AATT | 3 cut(s) | 20, 36, 410 |
| SsiI | CCGC | 8 cut(s) | 15, 29, 43, 87, 95, 321, 482, 492 |
| SspMI | CTAG | 1 cut(s) | 66 |
| StyD4I | CCNGG | 1 cut(s) | 50 |
| TaaI | ACNGT | 1 cut(s) | 340 |
| TaiI | ACGT | 3 cut(s) | 9, 140, 216 |
| TaqI | TCGA | 3 cut(s) | 118, 122, 187 |
| TasI | AATT | 3 cut(s) | 20, 36, 410 |
| TatI | WGTACW | 1 cut(s) | 340 |
| TauI | GCSGC | 3 cut(s) | 89, 98, 495 |
| TfiI | GAWTC | 1 cut(s) | 184 |
| Tru1I | TTAA | 2 cut(s) | 335, 393 |
| Tru9I | TTAA | 2 cut(s) | 335, 393 |
| TscAI | CASTG | 1 cut(s) | 249 |
| TseFI | GTSAC | 2 cut(s) | 214, 290 |
| TseI | GCWGC | 2 cut(s) | 239, 353 |
| Tsp45I | GTSAC | 2 cut(s) | 214, 290 |
| TspDTI | ATGAA | 2 cut(s) | 197, 502 |
| TspGWI | ACGGA | 1 cut(s) | 328 |
| TspRI | CASTG | 1 cut(s) | 249 |
| XspI | CTAG | 1 cut(s) | 66 |