Rorug02G0474400

udp-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000040
Physical Location & Seq
Reverse (-)
60548264 .. 60551213
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0474400.1

Sequence Viewer

Length: 2781 bp
ATGGCAACCCAGAAACAGAAACCACTAAATTGTAGTCCTGATTTACAGTTTCTACTTATAGTTTTCATGGTGGTTTCTTCTTCCTTGGCAACTTCATCTTCAACAGCAACAGAAGCAGAAGCAGAAGCTCTTTTGAATTGGAAGTCAAGCCTTGACAATACAAGCCTGTCTCTCTTGTCCTCATGGGTTGGAGACAACAGCAGCACTTGCAATTGGGTTGGGATTTCCTGCAACAACTTTGGAAGCATCAACCATATAAACCTCACTGATTCTGGTTTGAGAGGTACACTTCATACTTTGAGTTTCTCGACTTTCCCAAATCTCATAAGCCTTAACTTGAGCCATAACGCCTTTTTTGGAACCATTCCCCCAAGTTTAGGTAACTTGTCTAGTCTTGAAATCCTTGATCTTTCTCAAAATAACATTAATGGGTCCATTCCTGATGAGTTTGCAATGCTAGGCAACTTATCCACTTTTTCATTTCAGAAAAATCAAATTTCTGGTCAAATTCCTCAAGAAATGTACAAGCTAAGTTCACTTTGTGTGATTGACATATCAATCAACAATATCACTGGTTCAATCCCAGCATCTATAGGAAACTTATCCAACTTAATTGTTCTAGATCTTCATCAAAACGCTTTGTCAGGATCGATTCCTTCCAGTATTGGAAACCTGACTAGGTTGAAAGTGTTGTACTTGATGGATAATCAATTATCTGGAGCCATCCCAAATGAAGTAGGAAAGCTCAAGTTTCTTACCGATCTAGGATTGGCAAATAACAAACTAAATGGTACCATTCCTCTAGAGATAAACAACCTTGTATATTTGAAGAATTTGTGGTTGAGTAACAACAGCTTGTCTGGTTCTATTCCCGGAGATGTATGCAGTGGTGGATTGCTTGAAATATTTACAGCACATAATAATCTGTTGACAGGTCCCATACCTAGAAGCTTGAGAAACTGCACTAGCTTAACTAGGTTGAGACTTGAAAGAAACCAACTATCAGGAAACATAAGTGAAGAGCTTGGCATTTATCCGAAATTGAATTACATTGATCTGAGTTATAACAGACTGTATGGAGAGCTTTCTGAGAACTGGGGGAAGTGCCAAAACTTGCAAAGCTTAAGACTCAGTAGCAACAGAATTTCAGGGAGAATTCCTCATCTTGAGGGATCTGAGCTACATGTACTTGAACTTTCTTCAAACGGTCTCATTGGGTCAATTCCAAAGGAACTAGGAAAGTTGTCATCCTTGTTCAACCTCAGCCTTGCGGACAACAGACTTTCGGGCAGTGTCCCATTAGAGATTGGAATGTTGTCCAATCTGCAATATCTTAACTTAGGAGCAAACAATTTGACTGGATTGATTCCAGAGCAATTAGACGGGTGCAGAAAGTTGTTGAGCTTGAATTTGAGCAGAAATAGATTTCGTGAGAGCATTCCTCTTGAGATTGGAAGCATACAATCTCTACAAATTCTTGATCTGAGTCATAATTTGCTAATGAATAGAATACCAGCACAGCTTGGAGGGTTGCAAAAGCTAGAAGCATTGAATCTCTCCCACAATGAGCTCTTGGGTTCAATCCCATCCTCTTTTGATAACATGTTGAGCTTGACAGTTGTTGACATATCTTACAATCAATTGGAGGGTCCTCTTCCCAACAATAAAGCATTCCAAGAGGCTCCAGTTGGAGCTTTGGGGAATAACAAATGGTTGTGTGGTAATGCCACCGGTTTGAATGCTTGCCCATCTATAACAAGGGGTGGGAAAAAGAGTAACAAATCTACTATTTTCATCATAGTCCTTGTTTTAGGTATTGTCGTTTTCGTATTTGTAGTAGTTGGAGTTCTGTATATGATATGCCATACCCGAGAGCCGCAAAATGAAAACCAATTTGAAGTTTGGAGCTTGGATGGATTACTTGTGTATGAAGACATCATTGAAGCTACAGAGTCATTCAACTCCAAACATTGTGTAGGAGTAGGAGGGACTGCAAGTGTTTATAAAGCTCAACTGCAAACTGGTCGGATTGTTGCAGTAAAGAAACTTCACACGCTGCAGGATAGTGGTGGAGAAGCAATTCTGAAGGCTTTTGAGAGTGAGATTCGTACTCTTGCAGAAATCCGTCACCGCAACATATTGAAGCTTTATGGTTTCTGTGCACATCCGCGGCACCCTCTTTTGCTCTACGAGTTCATAGAAGGAGGAAGCTTGGAAAACATATTGACTGATGAAAACTATGCAAGTAATTTTGGATGGATGGAGAGGGTGAATGTTGTCAAAGATGTTGCAAATGCATTATCATATATGCACCATGATTGCTCGCCTCCAATAGTTCATCGAGACATATCAAGCAAGAACATCCTGCTGGATTTAGAGTATAGAGCTTATGTGTCTGATTTTGGTACAGCTAGGTTTTTGAAGCCTAATGCTTCTAATTGGACAACATTTGCAGGCACATTTGGATATAGTGCTCCAGAGTTGGCATACACAGTGGAACCAAATGAGAAATGTGATGTTTATAGCTTTGGAGTGGTAGCATTGGAAGTGATCATGGGAAAGCATCCTGGAGATCTCATCTCCTACTTTTTGTCACTTTCATCAACATCAACAACACAAGGTGTACAACTGAAGGATGTCTTGGACCAACGCATCTTGCCTCCTAACAATCAAGCTGCTGAGAAAGTGATCGCGGTTGCAAATCTTGCATTTGCATGCTTGCGAACGAGTCCACAATCTCGACCAACCATGGATCAAGTTTCCCAGGAGTTGTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd Nucleotid_trans

Protein Analysis

926

Amino Acids

101.16

Weight (kDa)

5.8

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 39 - 78 5.9e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 106 - 166 4.8e-06 Leucine rich repeat
LRR_4 PF12799 106 - 147 7.9e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 179 - 238 1.2e-07 Leucine rich repeat
LRR_14 PF23598 192 - 258 3.3e-08 Leucine-rich repeat region
LRR_14 PF23598 245 - 381 2.2e-06 Leucine-rich repeat region
LRR_8 PF13855 439 - 476 8.4e-07 Leucine rich repeat
LRR_14 PF23598 466 - 542 6.5e-06 Leucine-rich repeat region
LRR_8 PF13855 489 - 548 7e-07 Leucine rich repeat
Pkinase PF00069 654 - 923 1.7e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 656 - 924 8.8e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000040)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00150 FvH4_2g13531 FvH4_2g21543 FvH4_3g32800 FvH4_3g32802 FvH4_4g00091 FvH4_4g00092 FvH4_5g22070 FvH4_5g31391 FvH4_6g11351 FvH4_6g23430 FvH4_6g23672 FvH4_6g52753
malus_domestica MD03G1101500.v1.1 MD08G1234800.v1.1
pyrus_communis pycom07g24860 pycom09g07860 pycom10g09330 pycom10g15360 pycom11g01600 pycom11g13460 pycom13g15580
rosa_chinensis RchiOBHm_Chr1g0332021 RchiOBHm_Chr2g0095801 RchiOBHm_Chr2g0111771 RchiOBHm_Chr2g0127541 RchiOBHm_Chr2g0136581 RchiOBHm_Chr2g0136591 RchiOBHm_Chr2g0143311 RchiOBHm_Chr2g0145131 RchiOBHm_Chr2g0151391 RchiOBHm_Chr3g0468771 RchiOBHm_Chr3g0473281 RchiOBHm_Chr3g0481961 RchiOBHm_Chr4g0393741 RchiOBHm_Chr4g0397391 RchiOBHm_Chr4g0435991 RchiOBHm_Chr5g0015951 RchiOBHm_Chr5g0016651 RchiOBHm_Chr5g0039191 RchiOBHm_Chr5g0039211 RchiOBHm_Chr6g0254441 RchiOBHm_Chr6g0260911 RchiOBHm_Chr6g0274501 RchiOBHm_Chr6g0274511 RchiOBHm_Chr7g0184951 RchiOBHm_Chr7g0201701 RchiOBHm_Chr7g0201721 RchiOBHm_Chr7g0201731 RchiOBHm_Chr7g0234921 RchiOBHm_Chr7g0237841
rosa_laevigata RLG00000001204 RLG00000001230 RLG00000001341 RLG00000001513 RLG00000001971 RLG00000002177 RLG00000002360 RLG00000003112 RLG00000003130 RLG00000003854 RLG00000008209 RLG00000008322 RLG00000008412 RLG00000008524 RLG00000009491 RLG00000009908 RLG00000011823 RLG00000013252 RLG00000013782 RLG00000013944 RLG00000014480 RLG00000019084 RLG00000019544 RLG00000019751 RLG00000020093 RLG00000020094 RLG00000020551 RLG00000020838 RLG00000020982 RLG00000021059 RLG00000022067 RLG00000022604 RLG00000022632 RLG00000022849 RLG00000023962 RLG00000025767 RLG00000026838 RLG00000027291 RLG00000028131 RLG00000028210 RLG00000028834 RLG00000030169 RLG00000031271 RLG00000032327 RLG00000033996 RLG00000034546 RLG00000034654 RLG00000034810 RLG00000035087 RLG00000036782
rosa_multiflora Rmu_co8330487.1_g000001 Rmu_co8359977.1_g000001 Rmu_co8445341.1_g000001 Rmu_sc0000141.1_g000003 Rmu_sc0000353.1_g000018 Rmu_sc0000740.1_g000017 Rmu_sc0000744.1_g000138 Rmu_sc0000813.1_g000014 Rmu_sc0000908.1_g000003 Rmu_sc0000999.1_g000014 Rmu_sc0001103.1_g000001 Rmu_sc0001248.1_g000013 Rmu_sc0001282.1_g000021 Rmu_sc0001293.1_g000018 Rmu_sc0001608.1_g000015 Rmu_sc0001616.1_g000060 Rmu_sc0001851.1_g000013 Rmu_sc0001990.1_g000003 Rmu_sc0002138.1_g000002 Rmu_sc0002200.1_g000021 Rmu_sc0002230.1_g000029 Rmu_sc0002230.1_g000030 Rmu_sc0002702.1_g000017 Rmu_sc0002806.1_g000010 Rmu_sc0002809.1_g000023 Rmu_sc0002869.1_g000005 Rmu_sc0003156.1_g000027 Rmu_sc0003368.1_g000018 Rmu_sc0003642.1_g000007 Rmu_sc0003653.1_g000004 Rmu_sc0003791.1_g000008 Rmu_sc0003804.1_g000013 Rmu_sc0004015.1_g000022 Rmu_sc0004230.1_g000017 Rmu_sc0004368.1_g000011 Rmu_sc0004529.1_g000011 Rmu_sc0004540.1_g000011 Rmu_sc0005008.1_g000014 Rmu_sc0005171.1_g000001 Rmu_sc0005212.1_g000013 Rmu_sc0005947.1_g000003 Rmu_sc0006317.1_g000026 Rmu_sc0006578.1_g000005 Rmu_sc0006993.1_g000001 Rmu_sc0007442.1_g000002 Rmu_sc0007442.1_g000004 Rmu_sc0007876.1_g000004 Rmu_sc0007876.1_g000005 Rmu_sc0009624.1_g000004 Rmu_sc0009742.1_g000005 Rmu_sc0010306.1_g000007 Rmu_sc0011745.1_g000008 Rmu_sc0011800.1_g000003 Rmu_sc0012369.1_g000003 Rmu_sc0012787.1_g000003 Rmu_sc0012989.1_g000001 Rmu_sc0013416.1_g000003 Rmu_sc0021155.1_g000001 Rmu_sc0022372.1_g000001 Rmu_sc0023106.1_g000001 Rmu_sc0023684.1_g000003 Rmu_sc0023684.1_g000004 Rmu_sc0026897.1_g000001 Rmu_sc0027278.1_g000001 Rmu_sc0028533.1_g000001 Rmu_sc0028533.1_g000003 Rmu_sc0038440.1_g000001
rosa_roxburghii Rroxscaffold_1G00031730 Rroxscaffold_1G00033690 Rroxscaffold_1G00073100 Rroxscaffold_2G00079640 Rroxscaffold_2G00089760 Rroxscaffold_2G00091520 Rroxscaffold_2G00112420 Rroxscaffold_2G00115720 Rroxscaffold_2G00116170 Rroxscaffold_2G00116180 Rroxscaffold_2G00152590 Rroxscaffold_2G00155940 Rroxscaffold_3G00220010 Rroxscaffold_3G00234940 Rroxscaffold_3G00235250 Rroxscaffold_3G00237510 Rroxscaffold_3G00250950 Rroxscaffold_3G00250960 Rroxscaffold_3G00262030 Rroxscaffold_4G00299560 Rroxscaffold_4G00306000 Rroxscaffold_4G00311350 Rroxscaffold_4G00318530 Rroxscaffold_4G00329140 Rroxscaffold_5G00342020 Rroxscaffold_5G00350770 Rroxscaffold_5G00354620 Rroxscaffold_5G00354630 Rroxscaffold_5G00361180 Rroxscaffold_5G00377270 Rroxscaffold_6G00397870 Rroxscaffold_6G00397960 Rroxscaffold_6G00407290 Rroxscaffold_6G00408690 Rroxscaffold_6G00421900 Rroxscaffold_6G00421910 Rroxscaffold_7G00181630 Rroxscaffold_7G00182330 Rroxscaffold_7G00182340 Rroxscaffold_7G00212590 Rroxscaffold_7G00214060 Rroxscaffold_7G00214070 Rroxscaffold_7G00215940
rosa_rugosa Rorug01G0052800 Rorug01G0052800 Rorug01G0075200 Rorug01G0090500 Rorug01G0091500 Rorug01G0106000 Rorug01G0309300 Rorug01G0309400.1 Rorug02G0092000 Rorug02G0128200 Rorug02G0152800 Rorug02G0366100 Rorug02G0401500 Rorug02G0465600 Rorug02G0474400 Rorug03G0322500 Rorug04G0044000 Rorug04G0044100 Rorug04G0064800.1 Rorug04G0077400 Rorug04G0094800 Rorug04G0094800 Rorug04G0111400 Rorug04G0137800 Rorug04G0137900 Rorug04G0138000 Rorug04G0138000 Rorug04G0446200 Rorug05G0090600 Rorug05G0239900 Rorug05G0284400 Rorug05G0534400 Rorug05G0561600 Rorug06G0098100 Rorug06G0098100 Rorug06G0134500 Rorug06G0238500 Rorug06G0238600 Rorug07G0228900 Rorug07G0229000 Rorug07G0291600 Rorug07G0291700
rosa_samantha Rh1AG082200 Rh1AG129200 Rh1AG131500 Rh1AG159900 Rh1AG330800 Rh1AG408400 Rh1BG089600 Rh1CG086000 Rh1CG149200 Rh1CG405600 Rh1DG008200 Rh1DG015800 Rh1DG068000 Rh1DG118400 Rh1DG122500 Rh1DG202400 Rh1DG202500 Rh1DG266300 Rh1DG266400 Rh1DG287400 Rh1DG314700 Rh1DG314800 Rh2AG128400 Rh2AG128500 Rh2AG291000 Rh2AG347900 Rh2AG350700 Rh2AG415100 Rh2AG417200 Rh2AG497700 Rh2AG505000 Rh2AG507600 Rh2BG131300 Rh2BG233900 Rh2BG291700 Rh2BG291800 Rh2BG302700 Rh2BG302800 Rh2BG334700 Rh2BG334900 Rh2BG347000 Rh2BG347800 Rh2BG357100 Rh2BG528200 Rh2BG528300 Rh2BG603700 Rh2CG032300 Rh2CG034300 Rh2CG232600 Rh2CG483700 Rh2DG077400 Rh2DG103100 Rh2DG103200 Rh2DG287000 Rh2DG287200 Rh2DG375000 Rh2DG382700 Rh2DG537400 Rh2DG602900 Rh2DG603000 Rh3AG080800 Rh3AG217300 Rh3AG321800 Rh3BG082700 Rh3BG082800 Rh3BG168600 Rh3BG185900 Rh3BG224400 Rh3BG250500 Rh3BG260700 Rh3BG351300 Rh3BG353600 Rh3BG353700 Rh3CG082900 Rh3CG083000 Rh3CG176200 Rh3CG176300 Rh3CG219400 Rh3CG219500 Rh3CG254600 Rh3CG254700 Rh3CG256000 Rh3CG256100 Rh3CG257400 Rh3CG356200 Rh3CG356300 Rh3DG084300 Rh4AG030500 Rh4BG132300 Rh4BG139800 Rh4BG140000 Rh4CG027200 Rh4CG033100 Rh4CG033200 Rh4CG069600 Rh4CG103300 Rh4CG322600 Rh4DG028500 Rh4DG081000 Rh4DG190200 Rh4DG193500 Rh4DG212900 Rh4DG303900 Rh4DG342900 Rh5AG131000 Rh5AG166800 Rh5AG167000 Rh5AG201600 Rh5AG372200 Rh5AG372300 Rh5AG417900 Rh5BG082500 Rh5BG171200 Rh5BG171300 Rh5BG180300 Rh5BG194400 Rh5BG302800 Rh5BG343300 Rh5BG402700 Rh5BG428500 Rh5CG190700 Rh5CG190800 Rh5CG219100 Rh5CG451900 Rh5DG175200 Rh5DG175400 Rh5DG177000 Rh5DG177100 Rh5DG356000 Rh5DG356100 Rh5DG493500 Rh6AG006700 Rh6AG051700 Rh6AG064100 Rh6AG064200 Rh6AG064500 Rh6AG092800 Rh6AG152000 Rh6AG152100 Rh6AG291900 Rh6AG419000 Rh6AG465900 Rh6AG466000 Rh6BG125000 Rh6BG160600 Rh6BG161800 Rh6BG359100 Rh6BG359200 Rh6CG071400 Rh6CG071500 Rh6CG103500 Rh6CG103600 Rh6CG117200 Rh6CG123700 Rh6CG123800 Rh6CG156600 Rh6CG192500 Rh6CG208600 Rh6CG208700 Rh6CG365200 Rh6DG146200 Rh6DG146800 Rh6DG193200 Rh6DG193300 Rh6DG193400 Rh6DG349200 Rh7AG251100 Rh7AG259300 Rh7AG425100 Rh7BG262700 Rh7BG262900 Rh7BG369500 Rh7CG107400 Rh7CG107500 Rh7CG257400 Rh7CG267300 Rh7DG070500 Rh7DG105000 Rh7DG198500 Rh7DG291300 Rh7DG480600
rosa_wichuraiana Rw2G027920 Rw3G014750 Rw3G021490 Rw4G001910 Rw6G013120 Rw6G020040 Rw6G022930 Rw6G041900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1065, 2004
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 2 cut(s) 791, 2172
AccII CGCG 2 cut(s) 2170, 2693
AciI CCGC 6 cut(s) 1271, 1877, 2131, 2168, 2170, 2693
AclWI GGATC 3 cut(s) 655, 1180, 2760
AcsI RAATTY 7 cut(s) 495, 507, 832, 1143, 1155, 1408, 1473
AcuI CTGAAG 2 cut(s) 2105, 2651
AdeI CACNNNGTG 2 cut(s) 542, 2621
AfaI GTAC 8 cut(s) 286, 524, 695, 793, 1188, 2110, 2407, 2625
AfiI CCNNNNNNNGG 1 cut(s) 377
AflII CTTAAG 1 cut(s) 1123
AflIII ACRYGT 2 cut(s) 1183, 1602
AgeI ACCGGT 1 cut(s) 1730
AjnI CCWGG 2 cut(s) 2566, 2763
AjuI GAANNNNNNNTTGG 2 cut(s) 2624, 2656
Alw21I GWGCWC 3 cut(s) 1572, 2164, 2476
Alw26I GTCTC 5 cut(s) 174, 186, 976, 1214, 2337
Alw44I GTGCAC 1 cut(s) 2160
AlwI GGATC 3 cut(s) 655, 1180, 2760
Ama87I CYCGRG 1 cut(s) 1869
ApaLI GTGCAC 1 cut(s) 2160
ApeKI GCWGC 3 cut(s) 201, 2056, 2675
ApoI RAATTY 7 cut(s) 495, 507, 832, 1143, 1155, 1408, 1473
ArsI GACNNNNNNTTYG 2 cut(s) 487, 519
AseI ATTAAT 1 cut(s) 426
AsiGI ACCGGT 1 cut(s) 1730
Asp700I GAANNNNTTC 1 cut(s) 2079
Asp718I GGTACC 1 cut(s) 791
AspS9I GGNCC 4 cut(s) 432, 935, 1649, 2644
AsuC2I CCSGG 1 cut(s) 873
AsuHPI GGTGA 2 cut(s) 2120, 2281
AvaI CYCGRG 1 cut(s) 1869
AvaII GGWCC 4 cut(s) 432, 935, 1649, 2644
BaeGI GKGCMC 1 cut(s) 2164
BanI GGYRCC 2 cut(s) 791, 2172
BanII GRGCYC 1 cut(s) 1572
BarI GAAGNNNNNNTAC 2 cut(s) 2031, 2063
BbsI GAAGAC 1 cut(s) 1938
Bbv12I GWGCWC 3 cut(s) 1572, 2164, 2476
BbvCI CCTCAGC 1 cut(s) 1262
BbvI GCAGC 3 cut(s) 213, 2043, 2662
BccI CCATC 7 cut(s) 694, 731, 1594, 1756, 1907, 2250, 2254
BcgI CGANNNNNNTGC 2 cut(s) 2006, 2040
BciT130I CCWGG 2 cut(s) 2568, 2765
BclI TGATCA 1 cut(s) 2550
BcnI CCSGG 1 cut(s) 873
BcoDI GTCTC 5 cut(s) 174, 186, 976, 1214, 2337
BfmI CTRYAG 3 cut(s) 591, 1947, 2057
BfrI CTTAAG 1 cut(s) 1123
BglII AGATCT 2 cut(s) 622, 2572
BisI GCNGC 5 cut(s) 202, 1877, 2057, 2171, 2676
BlsI GCNGC 5 cut(s) 203, 1878, 2058, 2172, 2677
Bme1390I CCNGG 3 cut(s) 873, 2568, 2765
Bme18I GGWCC 4 cut(s) 432, 935, 1649, 2644
BmeT110I CYCGRG 1 cut(s) 1869
BmgT120I GGNCC 4 cut(s) 432, 935, 1649, 2644
BmiI GGNNCC 9 cut(s) 361, 433, 721, 793, 937, 1650, 1683, 2174, 2499
BmrFI CCNGG 3 cut(s) 873, 2568, 2765
BmrI ACTGGG 1 cut(s) 1105
BmsI GCATC 4 cut(s) 255, 596, 2572, 2661
BmuI ACTGGG 1 cut(s) 1105
BpiI GAAGAC 1 cut(s) 1938
BplI GAGNNNNNCTC 4 cut(s) 1144, 1176, 1426, 1458
BpmI CTGGAG 4 cut(s) 738, 1668, 2460, 2589
Bpu10I CCTNAGC 1 cut(s) 1262
BpuEI CTTGAG 6 cut(s) 358, 498, 731, 973, 1187, 1466
BpuMI CCSGG 1 cut(s) 873
Bsa29I ATCGAT 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 4 cut(s) 84, 2168, 2748, 2763
BsaWI WCCGGW 1 cut(s) 1730
BsaXI ACNNNNNCTCC 1 cut(s) 2759
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 1730
Bse1I ACTGG 6 cut(s) 577, 660, 1100, 1363, 1685, 2026
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 2 cut(s) 2568, 2765
BseCI ATCGAT 1 cut(s) 650
BseDI CCNNGG 4 cut(s) 84, 2168, 2748, 2763
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 7 cut(s) 1049, 1080, 1144, 1167, 1276, 1475, 2670
BseNI ACTGG 6 cut(s) 577, 660, 1100, 1363, 1685, 2026
BseSI GKGCMC 1 cut(s) 2164
BseXI GCAGC 3 cut(s) 213, 2043, 2662
BseYI CCCAGC 1 cut(s) 583
BsgI GTGCAG 2 cut(s) 946, 1408
Bsh1236I CGCG 2 cut(s) 2170, 2693
BshNI GGYRCC 2 cut(s) 791, 2172
BshTI ACCGGT 1 cut(s) 1730
BshVI ATCGAT 1 cut(s) 650
BsiHKAI GWGCWC 3 cut(s) 1572, 2164, 2476
BsiHKCI CYCGRG 1 cut(s) 1869
BsiSI CCGG 2 cut(s) 873, 1731
BslFI GGGAC 3 cut(s) 921, 1280, 2002
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 5 cut(s) 174, 186, 976, 1214, 2337
BsmFI GGGAC 3 cut(s) 921, 1280, 2002
BsmI GAATGC 3 cut(s) 1437, 1670, 1744
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 1869
Bsp1286I GDGCHC 3 cut(s) 1572, 2164, 2476
Bsp1407I TGTACA 2 cut(s) 522, 2623
Bsp19I CCATGG 1 cut(s) 2748
BspACI CCGC 6 cut(s) 1271, 1877, 2131, 2168, 2170, 2693
BspCNI CTCAG 7 cut(s) 1050, 1081, 1143, 1168, 1275, 1476, 2671
BspDI ATCGAT 1 cut(s) 650
BspFNI CGCG 2 cut(s) 2170, 2693
BspLI GGNNCC 9 cut(s) 361, 433, 721, 793, 937, 1650, 1683, 2174, 2499
BspMAI CTGCAG 1 cut(s) 2061
BspPI GGATC 3 cut(s) 655, 1180, 2760
BspQI GCTCTTC 1 cut(s) 1014
BspT107I GGYRCC 2 cut(s) 791, 2172
BspTI CTTAAG 1 cut(s) 1123
BspTNI GGTCTC 1 cut(s) 1214
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 1730
BsrGI TGTACA 2 cut(s) 522, 2623
BsrI ACTGG 6 cut(s) 577, 660, 1100, 1363, 1685, 2026
BssAI RCCGGY 1 cut(s) 1730
BssECI CCNNGG 4 cut(s) 84, 2168, 2748, 2763
BssT1I CCWWGG 2 cut(s) 84, 2748
Bst2UI CCWGG 2 cut(s) 2568, 2765
Bst4CI ACNGT 5 cut(s) 48, 1074, 1208, 1618, 2494
Bst6I CTCTTC 2 cut(s) 1014, 1659
BstAFI CTTAAG 1 cut(s) 1123
BstAPI GCANNNNNTGC 2 cut(s) 207, 2705
BstAUI TGTACA 2 cut(s) 522, 2623
BstC8I GCNNGC 5 cut(s) 1744, 2324, 2455, 2716, 2720
BstDEI CTNAG 9 cut(s) 530, 1058, 1089, 1130, 1176, 1262, 1339, 1484, 2679
BstDSI CCRYGG 2 cut(s) 2168, 2748
BstFNI CGCG 2 cut(s) 2170, 2693
BstMAI GTCTC 5 cut(s) 174, 186, 976, 1214, 2337
BstMWI GCNNNNNNNGC 3 cut(s) 113, 207, 2705
BstNI CCWGG 2 cut(s) 2568, 2765
BstNSI RCATGY 3 cut(s) 1187, 1606, 2718
BstSCI CCNGG 3 cut(s) 871, 2566, 2763
BstSFI CTRYAG 3 cut(s) 591, 1947, 2057
BstSLI GKGCMC 1 cut(s) 2164
BstUI CGCG 2 cut(s) 2170, 2693
BstV1I GCAGC 3 cut(s) 213, 2043, 2662
BstV2I GAAGAC 1 cut(s) 1938
BstX2I RGATCY 3 cut(s) 622, 1172, 2572
BstYI RGATCY 3 cut(s) 622, 1172, 2572
Bsu15I ATCGAT 1 cut(s) 650
BsuTUI ATCGAT 1 cut(s) 650
BtgI CCRYGG 2 cut(s) 2168, 2748
BtsI GCAGTG 2 cut(s) 892, 1297
BtsIMutI CAGTG 5 cut(s) 264, 570, 892, 1297, 2499
Cac8I GCNNGC 5 cut(s) 1744, 2324, 2455, 2716, 2720
Cfr10I RCCGGY 1 cut(s) 1730
Cfr13I GGNCC 4 cut(s) 432, 935, 1649, 2644
Cfr42I CCGCGG 1 cut(s) 2171
ClaI ATCGAT 1 cut(s) 650
Csp6I GTAC 8 cut(s) 285, 523, 694, 792, 1187, 2109, 2406, 2624
CspAI ACCGGT 1 cut(s) 1730
CviAII CATG 8 cut(s) 67, 183, 1184, 1603, 2315, 2554, 2715, 2749
CviQI GTAC 8 cut(s) 285, 523, 694, 792, 1187, 2109, 2406, 2624
DdeI CTNAG 9 cut(s) 530, 1058, 1089, 1130, 1176, 1262, 1339, 1484, 2679
DraIII CACNNNGTG 2 cut(s) 542, 2621
Eam1104I CTCTTC 2 cut(s) 1014, 1659
EarI CTCTTC 2 cut(s) 1014, 1659
Ecl136II GAGCTC 1 cut(s) 1570
Eco130I CCWWGG 2 cut(s) 84, 2748
Eco24I GRGCYC 1 cut(s) 1572
Eco31I GGTCTC 1 cut(s) 1214
Eco47I GGWCC 4 cut(s) 432, 935, 1649, 2644
Eco53kI GAGCTC 1 cut(s) 1570
Eco57I CTGAAG 2 cut(s) 2105, 2651
Eco88I CYCGRG 1 cut(s) 1869
EcoICRI GAGCTC 1 cut(s) 1570
EcoO109I RGGNCCY 2 cut(s) 935, 1649
EcoRI GAATTC 1 cut(s) 1155
EcoRII CCWGG 2 cut(s) 2566, 2763
EcoT14I CCWWGG 2 cut(s) 84, 2748
EcoT22I ATGCAT 1 cut(s) 2299
EcoT38I GRGCYC 1 cut(s) 1572
ErhI CCWWGG 2 cut(s) 84, 2748
FaeI CATG 8 cut(s) 70, 186, 1187, 1606, 2318, 2557, 2718, 2752
FalI AAGNNNNNCTT 2 cut(s) 2624, 2656
FaqI GGGAC 3 cut(s) 921, 1280, 2002
FatI CATG 8 cut(s) 66, 182, 1183, 1602, 2314, 2553, 2714, 2748
FbaI TGATCA 1 cut(s) 2550
Fnu4HI GCNGC 5 cut(s) 202, 1877, 2057, 2171, 2676
FriOI GRGCYC 1 cut(s) 1572
Fsp4HI GCNGC 5 cut(s) 202, 1877, 2057, 2171, 2676
GluI GCNGC 5 cut(s) 202, 1877, 2057, 2171, 2676
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 4 cut(s) 738, 1668, 2460, 2589
HapII CCGG 2 cut(s) 873, 1731
Hin1II CATG 8 cut(s) 70, 186, 1187, 1606, 2318, 2557, 2718, 2752
HincII GTYRAC 2 cut(s) 930, 1624
HindII GTYRAC 2 cut(s) 930, 1624
HindIII AAGCTT 4 cut(s) 949, 1120, 2144, 2209
HinfI GANTC 9 cut(s) 269, 652, 1128, 1366, 1486, 1552, 1952, 2104, 2728
HpaII CCGG 2 cut(s) 873, 1731
HphI GGTGA 2 cut(s) 2120, 2281
Hpy166II GTNNAC 7 cut(s) 287, 536, 930, 1624, 2162, 2624, 2732
Hpy188I TCNGA 9 cut(s) 486, 1038, 1059, 1090, 1177, 1485, 2028, 2085, 2398
Hpy8I GTNNAC 7 cut(s) 287, 536, 930, 1624, 2162, 2624, 2732
HpyAV CCTTC 4 cut(s) 666, 2080, 2195, 2626
HpyCH4III ACNGT 5 cut(s) 48, 1074, 1208, 1618, 2494
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 207, 2705
HpyF3I CTNAG 9 cut(s) 530, 1058, 1089, 1130, 1176, 1262, 1339, 1484, 2679
Hsp92II CATG 8 cut(s) 70, 186, 1187, 1606, 2318, 2557, 2718, 2752
KpnI GGTACC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 2550
KspI CCGCGG 1 cut(s) 2171
LguI GCTCTTC 1 cut(s) 1014
LmnI GCTCC 6 cut(s) 719, 1343, 1687, 1691, 1905, 2479
Lsp1109I GCAGC 3 cut(s) 213, 2043, 2662
LweI GCATC 4 cut(s) 255, 596, 2572, 2661
MaeIII GTNAC 5 cut(s) 380, 845, 1775, 2126, 2592
MboII GAAGA 9 cut(s) 69, 72, 90, 617, 841, 1031, 1191, 1646, 1943
MfeI CAATTG 2 cut(s) 211, 1640
MflI RGATCY 3 cut(s) 622, 1172, 2572
MhlI GDGCHC 3 cut(s) 1572, 2164, 2476
MlyI GAGTC 4 cut(s) 1122, 1495, 1961, 2737
MmeI TCCRAC 5 cut(s) 169, 630, 1669, 1822, 2006
Mph1103I ATGCAT 1 cut(s) 2299
MroXI GAANNNNTTC 1 cut(s) 2079
MseI TTAA 6 cut(s) 333, 426, 611, 971, 1124, 1335
MslI CAYNNNNRTG 1 cut(s) 2713
MspA1I CMGCKG 1 cut(s) 2170
MspCI CTTAAG 1 cut(s) 1123
MspI CCGG 2 cut(s) 873, 1731
MspR9I CCNGG 3 cut(s) 873, 2568, 2765
MunI CAATTG 2 cut(s) 211, 1640
Mva1269I GAATGC 3 cut(s) 1437, 1670, 1744
MvaI CCWGG 2 cut(s) 2568, 2765
MvnI CGCG 2 cut(s) 2170, 2693
MwoI GCNNNNNNNGC 3 cut(s) 113, 207, 2705
NciI CCSGG 1 cut(s) 873
NcoI CCATGG 1 cut(s) 2748
NlaIII CATG 8 cut(s) 70, 186, 1187, 1606, 2318, 2557, 2718, 2752
NlaIV GGNNCC 9 cut(s) 361, 433, 721, 793, 937, 1650, 1683, 2174, 2499
NmuCI GTSAC 2 cut(s) 2126, 2592
NsiI ATGCAT 1 cut(s) 2299
NspI RCATGY 3 cut(s) 1187, 1606, 2718
PaeI GCATGC 1 cut(s) 2718
PciI ACATGT 2 cut(s) 1183, 1602
PciSI GCTCTTC 1 cut(s) 1014
PctI GAATGC 3 cut(s) 1437, 1670, 1744
PdmI GAANNNNTTC 1 cut(s) 2079
PfeI GAWTC 5 cut(s) 269, 652, 1366, 1552, 2104
PfoI TCCNGGA 2 cut(s) 871, 2566
PinAI ACCGGT 1 cut(s) 1730
PkrI GCNGC 5 cut(s) 203, 1878, 2058, 2172, 2677
PleI GAGTC 4 cut(s) 1122, 1494, 1960, 2736
PpsI GAGTC 4 cut(s) 1122, 1494, 1960, 2736
PpuMI RGGWCCY 2 cut(s) 935, 1649
PscI ACATGT 2 cut(s) 1183, 1602
PshBI ATTAAT 1 cut(s) 426
PsiI TTATAA 2 cut(s) 1065, 2004
Psp124BI GAGCTC 1 cut(s) 1572
Psp5II RGGWCCY 2 cut(s) 935, 1649
Psp6I CCWGG 2 cut(s) 2566, 2763
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 2 cut(s) 2566, 2763
PspN4I GGNNCC 9 cut(s) 361, 433, 721, 793, 937, 1650, 1683, 2174, 2499
PspPI GGNCC 4 cut(s) 432, 935, 1649, 2644
PspPPI RGGWCCY 2 cut(s) 935, 1649
PsrI GAACNNNNNNTAC 2 cut(s) 1830, 1862
PstI CTGCAG 1 cut(s) 2061
PsuI RGATCY 3 cut(s) 622, 1172, 2572
RsaI GTAC 8 cut(s) 286, 524, 695, 793, 1188, 2110, 2407, 2625
RsaNI GTAC 8 cut(s) 285, 523, 694, 792, 1187, 2109, 2406, 2624
RseI CAYNNNNRTG 1 cut(s) 2713
SacI GAGCTC 1 cut(s) 1572
SacII CCGCGG 1 cut(s) 2171
SapI GCTCTTC 1 cut(s) 1014
SaqAI TTAA 6 cut(s) 333, 426, 611, 971, 1124, 1335
SatI GCNGC 5 cut(s) 202, 1877, 2057, 2171, 2676
Sau96I GGNCC 4 cut(s) 432, 935, 1649, 2644
SchI GAGTC 4 cut(s) 1122, 1495, 1961, 2737
ScrFI CCNGG 3 cut(s) 873, 2568, 2765
SduI GDGCHC 3 cut(s) 1572, 2164, 2476
SfaNI GCATC 4 cut(s) 255, 596, 2572, 2661
SfcI CTRYAG 3 cut(s) 591, 1947, 2057
Sfr303I CCGCGG 1 cut(s) 2171
SgrBI CCGCGG 1 cut(s) 2171
SinI GGWCC 4 cut(s) 432, 935, 1649, 2644
SmiMI CAYNNNNRTG 1 cut(s) 2713
SmlI CTYRAG 7 cut(s) 337, 513, 746, 952, 1123, 1166, 1445
SmoI CTYRAG 7 cut(s) 337, 513, 746, 952, 1123, 1166, 1445
SphI GCATGC 1 cut(s) 2718
SsiI CCGC 6 cut(s) 1271, 1877, 2131, 2168, 2170, 2693
SspI AATATT 1 cut(s) 906
SstI GAGCTC 1 cut(s) 1572
StyD4I CCNGG 3 cut(s) 871, 2566, 2763
StyI CCWWGG 2 cut(s) 84, 2748
TaaI ACNGT 5 cut(s) 48, 1074, 1208, 1618, 2494
TaqI TCGA 4 cut(s) 308, 650, 2341, 2740
TatI WGTACW 4 cut(s) 522, 693, 1186, 2623
TauI GCSGC 2 cut(s) 1879, 2173
TfiI GAWTC 5 cut(s) 269, 652, 1366, 1552, 2104
Tru1I TTAA 6 cut(s) 333, 426, 611, 971, 1124, 1335
Tru9I TTAA 6 cut(s) 333, 426, 611, 971, 1124, 1335
TscAI CASTG 5 cut(s) 271, 577, 892, 1297, 2499
TseFI GTSAC 2 cut(s) 2126, 2592
TseI GCWGC 3 cut(s) 201, 2056, 2675
Tsp45I GTSAC 2 cut(s) 2126, 2592
TspGWI ACGGA 1 cut(s) 2114
TspRI CASTG 5 cut(s) 271, 577, 892, 1297, 2499
Vha464I CTTAAG 1 cut(s) 1123
VneI GTGCAC 1 cut(s) 2160
VpaK11BI GGWCC 4 cut(s) 432, 935, 1649, 2644
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 7 cut(s) 495, 507, 832, 1143, 1155, 1408, 1473
XbaI TCTAGA 2 cut(s) 619, 802
XceI RCATGY 3 cut(s) 1187, 1606, 2718
XmnI GAANNNNTTC 1 cut(s) 2079
Zsp2I ATGCAT 1 cut(s) 2299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.