Rorug05G0090600

udp-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000040
Physical Location & Seq
Forward (+)
7942180 .. 7947685
5506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0090600.1

Sequence Viewer

Length: 1671 bp
ATGGCAACAAGAAGCTCGAGCTCAGAAGCTTTGACGACCACTCTGTCCAACTCAATCCAAGCTCTGGGTCGAGGCTTTGATGTGACTTCGGATATTAGGCTTCTGTATTGCAAAGGAGCACCTGGGTCAAGGCTTGTGAATCTGGATGAGAGTGGGGCTAAAGATCTTGCTTTTTCTGATGGGGTTGTGGTGCCAAATGTGCCTGCAGATATTGACTGCTCACCCGGGAAGAGAACCATTGAGAGAGTCCCTGTCTGTAGCTTCCATGAGATGGCGGAATACTTTAATAAGAAATCAGGTATATCAACCCGAATTCCCCTGGGAAGCTTCAATGCCATGTTTAATTTCACCGGTTCTTGGCAAGTTGATGCAGCAGCAACCAAATCCCTTGCTATGGTTGGATACTTTATTCCCCTATACAAAGTCAACTTAGAAACAGAAAATTTGGTTTTGCGTGATGAAATCAAGCGTGCTGTTCCTTACTCTTGGGATCCTGCAGCCTTGGCAAGTTTCATTGAGAACTTTGGTACACATATAGTCACATCTGCGACAATAGGTGGGAGAGATGTGGTCTATATCAGGCAGCACCAGTCATCTCCTTTATCATTATCAGACATTCAGAATTATGTGAAAGACATTGGTGATGATAGGTTTCTGGACTCAAAAGCCCAGTCAAGTGCTGGCCCCTTAAAATACAAGGACAAGGATGTTACGGTCATCTTCAGGAGAAGGGGAGGTGATGATCTTGAGCAGAGTCATTCCAAGTGGGCGGAGACAGTACAACTAGCACCAGATGTGGTCAATATGACGTTTACACCTATTGTTTCTCTTCTTGAAGGAGTGCCTGGAATAAAGCACTTGAGCCGTGCAATTGAGTTATATCTAGAGTACAAGCCTCCAATTGAAGATCTGCAGTATTTCTTGGACTTTCAAATTGCTCAGGTTTGGGCCCCAGAGCAAAATAATCTGCAAAGGAAAGAACCTGTCTGTTCATCCCTTCAATTCAGCTTGATGGGTCCCAAGCTTTATATCAGTCCGGATCAGGTAACAGTAGGCCGTAAGCCTGTCACAGGGCTCAGGCTTAACCTAGAAGGCAACAAGCAGAACCGACTTGCTATACATTTGCAGCATCTAGTGTCCCTTCCCAAGATTCTTCAACCCCATTGGGATGCCCATATGGCCATAGGTGCACCTAGGTGGCAAGGTCCAGAGGAGCAAGACAGTCGTTGGTTTGAGCCGATCAAGTGGAAGAACTTCTCCCACGTAAGCACTGCACCAATAGAGCACGTAGAGACTTCTATTGGTGACCTCTCTGGTGTTAACATTGTCACAGGTGCTCAGCTTGGTGTTTGGGATTTTGGTGCCAAAAATGTTTTGCACCTCAAACTCCTCTTTTCAAAAGTACCAGGCTGCACAATCCGACGGTCTGTGTGGGATCACAGTCCCGCCGCCCCTTCTTCTGCACAGAGGCCTGATGGTTCTTCTTCATCACATTCAAATAGCAGAAACTCTGATGACAAAAAGGACAAACTAGCAAAGTTAGTAGACTTGACAGAAATGTCAAAGGGGCCGCAAGATATTCCTGGACATTGGTTAGTCACAGGAGCTAAGCTTGGAGTGGACAAGGGAAAGATTGTATTGCGTGTAAAATATTCCTTGCTAAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd Nucleotid_trans

Protein Analysis

556

Amino Acids

61.52

Weight (kDa)

8.11

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MACPF PF01823 108 - 294 2.7e-30 MAC/Perforin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000040)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00150 FvH4_2g13531 FvH4_2g21543 FvH4_3g32800 FvH4_3g32802 FvH4_4g00091 FvH4_4g00092 FvH4_5g22070 FvH4_5g31391 FvH4_6g11351 FvH4_6g23430 FvH4_6g23672 FvH4_6g52753
malus_domestica MD03G1101500.v1.1 MD08G1234800.v1.1
pyrus_communis pycom07g24860 pycom09g07860 pycom10g09330 pycom10g15360 pycom11g01600 pycom11g13460 pycom13g15580
rosa_chinensis RchiOBHm_Chr1g0332021 RchiOBHm_Chr2g0095801 RchiOBHm_Chr2g0111771 RchiOBHm_Chr2g0127541 RchiOBHm_Chr2g0136581 RchiOBHm_Chr2g0136591 RchiOBHm_Chr2g0143311 RchiOBHm_Chr2g0145131 RchiOBHm_Chr2g0151391 RchiOBHm_Chr3g0468771 RchiOBHm_Chr3g0473281 RchiOBHm_Chr3g0481961 RchiOBHm_Chr4g0393741 RchiOBHm_Chr4g0397391 RchiOBHm_Chr4g0435991 RchiOBHm_Chr5g0015951 RchiOBHm_Chr5g0016651 RchiOBHm_Chr5g0039191 RchiOBHm_Chr5g0039211 RchiOBHm_Chr6g0254441 RchiOBHm_Chr6g0260911 RchiOBHm_Chr6g0274501 RchiOBHm_Chr6g0274511 RchiOBHm_Chr7g0184951 RchiOBHm_Chr7g0201701 RchiOBHm_Chr7g0201721 RchiOBHm_Chr7g0201731 RchiOBHm_Chr7g0234921 RchiOBHm_Chr7g0237841
rosa_laevigata RLG00000001204 RLG00000001230 RLG00000001341 RLG00000001513 RLG00000001971 RLG00000002177 RLG00000002360 RLG00000003112 RLG00000003130 RLG00000003854 RLG00000008209 RLG00000008322 RLG00000008412 RLG00000008524 RLG00000009491 RLG00000009908 RLG00000011823 RLG00000013252 RLG00000013782 RLG00000013944 RLG00000014480 RLG00000019084 RLG00000019544 RLG00000019751 RLG00000020093 RLG00000020094 RLG00000020551 RLG00000020838 RLG00000020982 RLG00000021059 RLG00000022067 RLG00000022604 RLG00000022632 RLG00000022849 RLG00000023962 RLG00000025767 RLG00000026838 RLG00000027291 RLG00000028131 RLG00000028210 RLG00000028834 RLG00000030169 RLG00000031271 RLG00000032327 RLG00000033996 RLG00000034546 RLG00000034654 RLG00000034810 RLG00000035087 RLG00000036782
rosa_multiflora Rmu_co8330487.1_g000001 Rmu_co8359977.1_g000001 Rmu_co8445341.1_g000001 Rmu_sc0000141.1_g000003 Rmu_sc0000353.1_g000018 Rmu_sc0000740.1_g000017 Rmu_sc0000744.1_g000138 Rmu_sc0000813.1_g000014 Rmu_sc0000908.1_g000003 Rmu_sc0000999.1_g000014 Rmu_sc0001103.1_g000001 Rmu_sc0001248.1_g000013 Rmu_sc0001282.1_g000021 Rmu_sc0001293.1_g000018 Rmu_sc0001608.1_g000015 Rmu_sc0001616.1_g000060 Rmu_sc0001851.1_g000013 Rmu_sc0001990.1_g000003 Rmu_sc0002138.1_g000002 Rmu_sc0002200.1_g000021 Rmu_sc0002230.1_g000029 Rmu_sc0002230.1_g000030 Rmu_sc0002702.1_g000017 Rmu_sc0002806.1_g000010 Rmu_sc0002809.1_g000023 Rmu_sc0002869.1_g000005 Rmu_sc0003156.1_g000027 Rmu_sc0003368.1_g000018 Rmu_sc0003642.1_g000007 Rmu_sc0003653.1_g000004 Rmu_sc0003791.1_g000008 Rmu_sc0003804.1_g000013 Rmu_sc0004015.1_g000022 Rmu_sc0004230.1_g000017 Rmu_sc0004368.1_g000011 Rmu_sc0004529.1_g000011 Rmu_sc0004540.1_g000011 Rmu_sc0005008.1_g000014 Rmu_sc0005171.1_g000001 Rmu_sc0005212.1_g000013 Rmu_sc0005947.1_g000003 Rmu_sc0006317.1_g000026 Rmu_sc0006578.1_g000005 Rmu_sc0006993.1_g000001 Rmu_sc0007442.1_g000002 Rmu_sc0007442.1_g000004 Rmu_sc0007876.1_g000004 Rmu_sc0007876.1_g000005 Rmu_sc0009624.1_g000004 Rmu_sc0009742.1_g000005 Rmu_sc0010306.1_g000007 Rmu_sc0011745.1_g000008 Rmu_sc0011800.1_g000003 Rmu_sc0012369.1_g000003 Rmu_sc0012787.1_g000003 Rmu_sc0012989.1_g000001 Rmu_sc0013416.1_g000003 Rmu_sc0021155.1_g000001 Rmu_sc0022372.1_g000001 Rmu_sc0023106.1_g000001 Rmu_sc0023684.1_g000003 Rmu_sc0023684.1_g000004 Rmu_sc0026897.1_g000001 Rmu_sc0027278.1_g000001 Rmu_sc0028533.1_g000001 Rmu_sc0028533.1_g000003 Rmu_sc0038440.1_g000001
rosa_roxburghii Rroxscaffold_1G00031730 Rroxscaffold_1G00033690 Rroxscaffold_1G00073100 Rroxscaffold_2G00079640 Rroxscaffold_2G00089760 Rroxscaffold_2G00091520 Rroxscaffold_2G00112420 Rroxscaffold_2G00115720 Rroxscaffold_2G00116170 Rroxscaffold_2G00116180 Rroxscaffold_2G00152590 Rroxscaffold_2G00155940 Rroxscaffold_3G00220010 Rroxscaffold_3G00234940 Rroxscaffold_3G00235250 Rroxscaffold_3G00237510 Rroxscaffold_3G00250950 Rroxscaffold_3G00250960 Rroxscaffold_3G00262030 Rroxscaffold_4G00299560 Rroxscaffold_4G00306000 Rroxscaffold_4G00311350 Rroxscaffold_4G00318530 Rroxscaffold_4G00329140 Rroxscaffold_5G00342020 Rroxscaffold_5G00350770 Rroxscaffold_5G00354620 Rroxscaffold_5G00354630 Rroxscaffold_5G00361180 Rroxscaffold_5G00377270 Rroxscaffold_6G00397870 Rroxscaffold_6G00397960 Rroxscaffold_6G00407290 Rroxscaffold_6G00408690 Rroxscaffold_6G00421900 Rroxscaffold_6G00421910 Rroxscaffold_7G00181630 Rroxscaffold_7G00182330 Rroxscaffold_7G00182340 Rroxscaffold_7G00212590 Rroxscaffold_7G00214060 Rroxscaffold_7G00214070 Rroxscaffold_7G00215940
rosa_rugosa Rorug01G0052800 Rorug01G0052800 Rorug01G0075200 Rorug01G0090500 Rorug01G0091500 Rorug01G0106000 Rorug01G0309300 Rorug01G0309400.1 Rorug02G0092000 Rorug02G0128200 Rorug02G0152800 Rorug02G0366100 Rorug02G0401500 Rorug02G0465600 Rorug02G0474400 Rorug03G0322500 Rorug04G0044000 Rorug04G0044100 Rorug04G0064800.1 Rorug04G0077400 Rorug04G0094800 Rorug04G0094800 Rorug04G0111400 Rorug04G0137800 Rorug04G0137900 Rorug04G0138000 Rorug04G0138000 Rorug04G0446200 Rorug05G0090600 Rorug05G0239900 Rorug05G0284400 Rorug05G0534400 Rorug05G0561600 Rorug06G0098100 Rorug06G0098100 Rorug06G0134500 Rorug06G0238500 Rorug06G0238600 Rorug07G0228900 Rorug07G0229000 Rorug07G0291600 Rorug07G0291700
rosa_samantha Rh1AG082200 Rh1AG129200 Rh1AG131500 Rh1AG159900 Rh1AG330800 Rh1AG408400 Rh1BG089600 Rh1CG086000 Rh1CG149200 Rh1CG405600 Rh1DG008200 Rh1DG015800 Rh1DG068000 Rh1DG118400 Rh1DG122500 Rh1DG202400 Rh1DG202500 Rh1DG266300 Rh1DG266400 Rh1DG287400 Rh1DG314700 Rh1DG314800 Rh2AG128400 Rh2AG128500 Rh2AG291000 Rh2AG347900 Rh2AG350700 Rh2AG415100 Rh2AG417200 Rh2AG497700 Rh2AG505000 Rh2AG507600 Rh2BG131300 Rh2BG233900 Rh2BG291700 Rh2BG291800 Rh2BG302700 Rh2BG302800 Rh2BG334700 Rh2BG334900 Rh2BG347000 Rh2BG347800 Rh2BG357100 Rh2BG528200 Rh2BG528300 Rh2BG603700 Rh2CG032300 Rh2CG034300 Rh2CG232600 Rh2CG483700 Rh2DG077400 Rh2DG103100 Rh2DG103200 Rh2DG287000 Rh2DG287200 Rh2DG375000 Rh2DG382700 Rh2DG537400 Rh2DG602900 Rh2DG603000 Rh3AG080800 Rh3AG217300 Rh3AG321800 Rh3BG082700 Rh3BG082800 Rh3BG168600 Rh3BG185900 Rh3BG224400 Rh3BG250500 Rh3BG260700 Rh3BG351300 Rh3BG353600 Rh3BG353700 Rh3CG082900 Rh3CG083000 Rh3CG176200 Rh3CG176300 Rh3CG219400 Rh3CG219500 Rh3CG254600 Rh3CG254700 Rh3CG256000 Rh3CG256100 Rh3CG257400 Rh3CG356200 Rh3CG356300 Rh3DG084300 Rh4AG030500 Rh4BG132300 Rh4BG139800 Rh4BG140000 Rh4CG027200 Rh4CG033100 Rh4CG033200 Rh4CG069600 Rh4CG103300 Rh4CG322600 Rh4DG028500 Rh4DG081000 Rh4DG190200 Rh4DG193500 Rh4DG212900 Rh4DG303900 Rh4DG342900 Rh5AG131000 Rh5AG166800 Rh5AG167000 Rh5AG201600 Rh5AG372200 Rh5AG372300 Rh5AG417900 Rh5BG082500 Rh5BG171200 Rh5BG171300 Rh5BG180300 Rh5BG194400 Rh5BG302800 Rh5BG343300 Rh5BG402700 Rh5BG428500 Rh5CG190700 Rh5CG190800 Rh5CG219100 Rh5CG451900 Rh5DG175200 Rh5DG175400 Rh5DG177000 Rh5DG177100 Rh5DG356000 Rh5DG356100 Rh5DG493500 Rh6AG006700 Rh6AG051700 Rh6AG064100 Rh6AG064200 Rh6AG064500 Rh6AG092800 Rh6AG152000 Rh6AG152100 Rh6AG291900 Rh6AG419000 Rh6AG465900 Rh6AG466000 Rh6BG125000 Rh6BG160600 Rh6BG161800 Rh6BG359100 Rh6BG359200 Rh6CG071400 Rh6CG071500 Rh6CG103500 Rh6CG103600 Rh6CG117200 Rh6CG123700 Rh6CG123800 Rh6CG156600 Rh6CG192500 Rh6CG208600 Rh6CG208700 Rh6CG365200 Rh6DG146200 Rh6DG146800 Rh6DG193200 Rh6DG193300 Rh6DG193400 Rh6DG349200 Rh7AG251100 Rh7AG259300 Rh7AG425100 Rh7BG262700 Rh7BG262900 Rh7BG369500 Rh7CG107400 Rh7CG107500 Rh7CG257400 Rh7CG267300 Rh7DG070500 Rh7DG105000 Rh7DG198500 Rh7DG291300 Rh7DG480600
rosa_wichuraiana Rw2G027920 Rw3G014750 Rw3G021490 Rw4G001910 Rw6G013120 Rw6G020040 Rw6G022930 Rw6G041900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 43, 1558
AccB1I GGYRCC 2 cut(s) 190, 1361
AccB7I CCANNNNNTGG 2 cut(s) 64, 271
AccI GTMKAC 1 cut(s) 1545
AccIII TCCGGA 1 cut(s) 1036
AciI CCGC 5 cut(s) 275, 770, 1446, 1449, 1571
AclWI GGATC 4 cut(s) 485, 498, 1047, 1443
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 2 cut(s) 312, 442
AcuI CTGAAG 1 cut(s) 706
AfaI GTAC 4 cut(s) 529, 780, 890, 1404
AfiI CCNNNNNNNGG 5 cut(s) 64, 271, 357, 394, 1070
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 8 cut(s) 331, 836, 905, 932, 1001, 1157, 1398, 1497
AjnI CCWGG 5 cut(s) 121, 318, 844, 1405, 1582
AleI CACNNNNGTG 1 cut(s) 1195
Alw21I GWGCWC 5 cut(s) 23, 121, 1192, 1287, 1339
Alw26I GTCTC 2 cut(s) 767, 1286
Alw44I GTGCAC 1 cut(s) 1188
AlwI GGATC 4 cut(s) 485, 498, 1047, 1443
Ama87I CYCGRG 2 cut(s) 16, 224
Aor13HI TCCGGA 1 cut(s) 1036
AoxI GGCC 6 cut(s) 682, 948, 1054, 1179, 1469, 1568
ApaI GGGCCC 1 cut(s) 952
ApaLI GTGCAC 1 cut(s) 1188
ApeKI GCWGC 6 cut(s) 371, 374, 497, 583, 1126, 1410
ApoI RAATTY 2 cut(s) 312, 442
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
AsiGI ACCGGT 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 1253
AspA2I CCTAGG 1 cut(s) 1193
AspS9I GGNCC 6 cut(s) 683, 948, 949, 1016, 1205, 1568
AsuC2I CCSGG 2 cut(s) 225, 226
AsuHPI GGTGA 5 cut(s) 213, 340, 653, 749, 1316
AvaI CYCGRG 2 cut(s) 16, 224
AvaII GGWCC 2 cut(s) 1016, 1205
AvrII CCTAGG 1 cut(s) 1193
BaeGI GKGCMC 2 cut(s) 952, 1192
BalI TGGCCA 1 cut(s) 1181
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 2 cut(s) 190, 1361
BanII GRGCYC 3 cut(s) 23, 952, 1077
Bbv12I GWGCWC 5 cut(s) 23, 121, 1192, 1287, 1339
BbvI GCAGC 6 cut(s) 383, 386, 509, 595, 1138, 1397
BccI CCATC 4 cut(s) 173, 265, 1006, 1469
BceAI ACGGC 2 cut(s) 849, 1041
BcgI CGANNNNNNTGC 2 cut(s) 1205, 1239
BciT130I CCWGG 5 cut(s) 123, 320, 846, 1407, 1584
BciVI GTATCC 1 cut(s) 395
BcnI CCSGG 2 cut(s) 225, 226
BcoDI GTCTC 2 cut(s) 767, 1286
BfaI CTAG 6 cut(s) 785, 884, 1088, 1133, 1194, 1532
BfmI CTRYAG 4 cut(s) 204, 256, 495, 911
BfuI GTATCC 1 cut(s) 395
BglI GCCNNNNNGGC 1 cut(s) 1178
BglII AGATCT 2 cut(s) 163, 907
BisI GCNGC 8 cut(s) 372, 375, 498, 584, 1127, 1411, 1449, 1571
BlnI CCTAGG 1 cut(s) 1193
BlpI GCTNAGC 2 cut(s) 1338, 1608
BlsI GCNGC 8 cut(s) 373, 376, 499, 585, 1128, 1412, 1450, 1572
Bme1390I CCNGG 7 cut(s) 123, 225, 226, 320, 846, 1407, 1584
Bme18I GGWCC 2 cut(s) 1016, 1205
BmeT110I CYCGRG 2 cut(s) 16, 224
BmgT120I GGNCC 6 cut(s) 683, 948, 949, 1016, 1205, 1568
BmiI GGNNCC 9 cut(s) 192, 492, 685, 950, 951, 1017, 1018, 1363, 1569
BmrFI CCNGG 7 cut(s) 123, 225, 226, 320, 846, 1407, 1584
BmrI ACTGGG 1 cut(s) 664
BmsI GCATC 3 cut(s) 358, 1138, 1159
BmuI ACTGGG 1 cut(s) 664
Bpu10I CCTNAGC 2 cut(s) 939, 1076
Bpu1102I GCTNAGC 2 cut(s) 1338, 1608
BpuEI CTTGAG 2 cut(s) 767, 880
BpuMI CCSGG 2 cut(s) 225, 226
BsaAI YACGTR 2 cut(s) 1264, 1288
BsaJI CCNNGG 6 cut(s) 122, 224, 318, 319, 501, 1193
BsaWI WCCGGW 2 cut(s) 350, 1036
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 271, 357, 394, 1070
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 589, 670
BseAI TCCGGA 1 cut(s) 1036
BseBI CCWGG 5 cut(s) 123, 320, 846, 1407, 1584
BseDI CCNNGG 6 cut(s) 122, 224, 318, 319, 501, 1193
BseGI GGATG 4 cut(s) 151, 712, 992, 1174
BseLI CCNNNNNNNGG 5 cut(s) 64, 271, 357, 394, 1070
BseMII CTCAG 4 cut(s) 36, 953, 1090, 1352
BseNI ACTGG 2 cut(s) 589, 670
BseRI GAGGAG 2 cut(s) 1226, 1379
BseSI GKGCMC 2 cut(s) 952, 1192
BseXI GCAGC 6 cut(s) 383, 386, 509, 595, 1138, 1397
BsgI GTGCAG 3 cut(s) 1257, 1396, 1446
BshFI GGCC 6 cut(s) 684, 950, 1056, 1181, 1471, 1570
BshNI GGYRCC 2 cut(s) 190, 1361
BshTI ACCGGT 1 cut(s) 350
BsiHKAI GWGCWC 5 cut(s) 23, 121, 1192, 1287, 1339
BsiHKCI CYCGRG 2 cut(s) 16, 224
BsiSI CCGG 3 cut(s) 225, 351, 1037
BslFI GGGAC 4 cut(s) 233, 1002, 1123, 1428
BslI CCNNNNNNNGG 5 cut(s) 64, 271, 357, 394, 1070
BsmAI GTCTC 2 cut(s) 767, 1286
BsmFI GGGAC 4 cut(s) 233, 1002, 1123, 1428
BsnI GGCC 6 cut(s) 684, 950, 1056, 1181, 1471, 1570
BsoBI CYCGRG 2 cut(s) 16, 224
Bsp120I GGGCCC 1 cut(s) 948
Bsp1286I GDGCHC 7 cut(s) 23, 121, 952, 1077, 1192, 1287, 1339
Bsp13I TCCGGA 1 cut(s) 1036
Bsp143I GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
Bsp1720I GCTNAGC 2 cut(s) 1338, 1608
BspACI CCGC 5 cut(s) 275, 770, 1446, 1449, 1571
BspANI GGCC 6 cut(s) 684, 950, 1056, 1181, 1471, 1570
BspCNI CTCAG 4 cut(s) 35, 952, 1089, 1351
BspEI TCCGGA 1 cut(s) 1036
BspLI GGNNCC 9 cut(s) 192, 492, 685, 950, 951, 1017, 1018, 1363, 1569
BspMAI CTGCAG 3 cut(s) 208, 499, 915
BspPI GGATC 4 cut(s) 485, 498, 1047, 1443
BspT107I GGYRCC 2 cut(s) 190, 1361
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 2 cut(s) 589, 670
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 6 cut(s) 122, 224, 318, 319, 501, 1193
BssMI GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
BssT1I CCWWGG 2 cut(s) 501, 1193
Bst2UI CCWGG 5 cut(s) 123, 320, 846, 1407, 1584
Bst4CI ACNGT 6 cut(s) 715, 778, 1051, 1223, 1425, 1442
Bst6I CTCTTC 2 cut(s) 224, 834
BstBAI YACGTR 2 cut(s) 1264, 1288
BstC8I GCNNGC 3 cut(s) 204, 471, 682
BstDEI CTNAG 6 cut(s) 22, 430, 939, 1076, 1338, 1608
BstEII GGTNACC 1 cut(s) 1304
BstENI CCTNNNNNAGG 1 cut(s) 1068
BstF5I GGATG 4 cut(s) 151, 712, 992, 1174
BstKTI GATC 7 cut(s) 166, 493, 745, 910, 1042, 1242, 1438
BstMAI GTCTC 2 cut(s) 767, 1286
BstMBI GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
BstMWI GCNNNNNNNGC 4 cut(s) 199, 503, 1178, 1187
BstNI CCWGG 5 cut(s) 123, 320, 846, 1407, 1584
BstPI GGTNACC 1 cut(s) 1304
BstSCI CCNGG 7 cut(s) 121, 223, 224, 318, 844, 1405, 1582
BstSFI CTRYAG 4 cut(s) 204, 256, 495, 911
BstSLI GKGCMC 2 cut(s) 952, 1192
BstV1I GCAGC 6 cut(s) 383, 386, 509, 595, 1138, 1397
BstX2I RGATCY 3 cut(s) 163, 490, 907
BstYI RGATCY 3 cut(s) 163, 490, 907
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 6 cut(s) 684, 950, 1056, 1181, 1471, 1570
BtsCI GGATG 4 cut(s) 151, 712, 992, 1174
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 1 cut(s) 1269
Cac8I GCNNGC 3 cut(s) 204, 471, 682
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 6 cut(s) 683, 948, 949, 1016, 1205, 1568
Cfr9I CCCGGG 1 cut(s) 224
Csp6I GTAC 4 cut(s) 528, 779, 889, 1403
CspAI ACCGGT 1 cut(s) 350
CviAII CATG 2 cut(s) 266, 337
CviQI GTAC 4 cut(s) 528, 779, 889, 1403
DdeI CTNAG 6 cut(s) 22, 430, 939, 1076, 1338, 1608
DpnI GATC 7 cut(s) 165, 492, 744, 909, 1041, 1241, 1437
DpnII GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
DrdI GACNNNNNNGTC 2 cut(s) 43, 1558
DseDI GACNNNNNNGTC 2 cut(s) 43, 1558
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 2 cut(s) 224, 834
EarI CTCTTC 2 cut(s) 224, 834
EciI GGCGGA 2 cut(s) 290, 785
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 501, 1193
Eco147I AGGCCT 1 cut(s) 1471
Eco24I GRGCYC 3 cut(s) 23, 952, 1077
Eco47I GGWCC 2 cut(s) 1016, 1205
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 16, 224
Eco91I GGTNACC 1 cut(s) 1304
EcoICRI GAGCTC 1 cut(s) 21
EcoNI CCTNNNNNAGG 1 cut(s) 1068
EcoO109I RGGNCCY 2 cut(s) 949, 1016
EcoO65I GGTNACC 1 cut(s) 1304
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 5 cut(s) 121, 318, 844, 1405, 1582
EcoT14I CCWWGG 2 cut(s) 501, 1193
EcoT38I GRGCYC 3 cut(s) 23, 952, 1077
ErhI CCWWGG 2 cut(s) 501, 1193
FaeI CATG 2 cut(s) 269, 340
FaqI GGGAC 4 cut(s) 233, 1002, 1123, 1428
FatI CATG 2 cut(s) 265, 336
FauI CCCGC 1 cut(s) 1453
FauNDI CATATG 1 cut(s) 1176
FblI GTMKAC 1 cut(s) 1545
Fnu4HI GCNGC 8 cut(s) 372, 375, 498, 584, 1127, 1411, 1449, 1571
FokI GGATG 4 cut(s) 158, 719, 979, 1181
FriOI GRGCYC 3 cut(s) 23, 952, 1077
Fsp4HI GCNGC 8 cut(s) 372, 375, 498, 584, 1127, 1411, 1449, 1571
FspBI CTAG 6 cut(s) 785, 884, 1088, 1133, 1194, 1532
GluI GCNGC 8 cut(s) 372, 375, 498, 584, 1127, 1411, 1449, 1571
HaeIII GGCC 6 cut(s) 684, 950, 1056, 1181, 1471, 1570
HapII CCGG 3 cut(s) 225, 351, 1037
Hin1II CATG 2 cut(s) 269, 340
HincII GTYRAC 2 cut(s) 427, 1321
HindII GTYRAC 2 cut(s) 427, 1321
HindIII AAGCTT 4 cut(s) 27, 325, 1022, 1610
HinfI GANTC 5 cut(s) 139, 246, 659, 754, 1150
HpaI GTTAAC 1 cut(s) 1321
HpaII CCGG 3 cut(s) 225, 351, 1037
HphI GGTGA 5 cut(s) 213, 340, 653, 749, 1316
Hpy166II GTNNAC 7 cut(s) 427, 530, 813, 1190, 1321, 1546, 1621
Hpy188I TCNGA 7 cut(s) 25, 91, 178, 613, 621, 1421, 1513
Hpy188III TCNNGA 8 cut(s) 143, 656, 724, 746, 833, 884, 1037, 1208
Hpy8I GTNNAC 7 cut(s) 427, 530, 813, 1190, 1321, 1546, 1621
Hpy99I CGWCG 1 cut(s) 1425
HpyAV CCTTC 6 cut(s) 723, 830, 1007, 1085, 1151, 1464
HpyCH4III ACNGT 6 cut(s) 715, 778, 1051, 1223, 1425, 1442
HpyCH4IV ACGT 3 cut(s) 809, 1263, 1287
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 503, 1178, 1187
HpyF3I CTNAG 6 cut(s) 22, 430, 939, 1076, 1338, 1608
HpySE526I ACGT 3 cut(s) 809, 1263, 1287
Hsp92II CATG 2 cut(s) 269, 340
KflI GGGWCCC 1 cut(s) 1016
Kpn2I TCCGGA 1 cut(s) 1036
KspAI GTTAAC 1 cut(s) 1321
Kzo9I GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
LmnI GCTCC 3 cut(s) 116, 1213, 1604
Lsp1109I GCAGC 6 cut(s) 383, 386, 509, 595, 1138, 1397
LweI GCATC 3 cut(s) 358, 1138, 1159
MaeI CTAG 6 cut(s) 785, 884, 1088, 1133, 1194, 1532
MaeII ACGT 3 cut(s) 809, 1263, 1287
MaeIII GTNAC 8 cut(s) 82, 538, 709, 1045, 1066, 1304, 1327, 1597
MalI GATC 7 cut(s) 165, 492, 744, 909, 1041, 1241, 1437
MboI GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
MboII GAAGA 9 cut(s) 241, 712, 821, 917, 1145, 1261, 1449, 1473, 1476
MfeI CAATTG 2 cut(s) 870, 900
MflI RGATCY 3 cut(s) 163, 490, 907
MhlI GDGCHC 7 cut(s) 23, 121, 952, 1077, 1192, 1287, 1339
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 8 cut(s) 312, 343, 442, 622, 870, 900, 933, 1001
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 3 cut(s) 255, 653, 763
MmeI TCCRAC 3 cut(s) 72, 379, 1444
MnlI CCTC 8 cut(s) 65, 728, 906, 1204, 1319, 1391, 1400, 1461
Mox20I TGGCCA 1 cut(s) 1181
MroI TCCGGA 1 cut(s) 1036
MroXI GAANNNNTTC 1 cut(s) 1253
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 5 cut(s) 285, 342, 689, 1083, 1320
MslI CAYNNNNRTG 2 cut(s) 1167, 1195
Msp20I TGGCCA 1 cut(s) 1181
MspI CCGG 3 cut(s) 225, 351, 1037
MspR9I CCNGG 7 cut(s) 123, 225, 226, 320, 846, 1407, 1584
MunI CAATTG 2 cut(s) 870, 900
MvaI CCWGG 5 cut(s) 123, 320, 846, 1407, 1584
MwoI GCNNNNNNNGC 4 cut(s) 199, 503, 1178, 1187
NciI CCSGG 2 cut(s) 225, 226
NdeI CATATG 1 cut(s) 1176
NdeII GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
NlaIII CATG 2 cut(s) 269, 340
NlaIV GGNNCC 9 cut(s) 192, 492, 685, 950, 951, 1017, 1018, 1363, 1569
NmuCI GTSAC 6 cut(s) 82, 538, 1066, 1304, 1327, 1597
OliI CACNNNNGTG 1 cut(s) 1195
PaeR7I CTCGAG 1 cut(s) 16
PasI CCCWGGG 1 cut(s) 319
PceI AGGCCT 1 cut(s) 1471
PdmI GAANNNNTTC 1 cut(s) 1253
PfeI GAWTC 2 cut(s) 139, 1150
PflMI CCANNNNNTGG 2 cut(s) 64, 271
PfoI TCCNGGA 1 cut(s) 1582
PinAI ACCGGT 1 cut(s) 350
PkrI GCNGC 8 cut(s) 373, 376, 499, 585, 1128, 1412, 1450, 1572
PleI GAGTC 3 cut(s) 254, 653, 762
PpsI GAGTC 3 cut(s) 254, 653, 762
Ppu21I YACGTR 2 cut(s) 1264, 1288
PpuMI RGGWCCY 1 cut(s) 1016
Psp124BI GAGCTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 1016
Psp6I CCWGG 5 cut(s) 121, 318, 844, 1405, 1582
PspEI GGTNACC 1 cut(s) 1304
PspGI CCWGG 5 cut(s) 121, 318, 844, 1405, 1582
PspN4I GGNNCC 9 cut(s) 192, 492, 685, 950, 951, 1017, 1018, 1363, 1569
PspOMI GGGCCC 1 cut(s) 948
PspPI GGNCC 6 cut(s) 683, 948, 949, 1016, 1205, 1568
PspPPI RGGWCCY 1 cut(s) 1016
PspXI VCTCGAGB 1 cut(s) 16
PstI CTGCAG 3 cut(s) 208, 499, 915
PsuI RGATCY 3 cut(s) 163, 490, 907
RsaI GTAC 4 cut(s) 529, 780, 890, 1404
RsaNI GTAC 4 cut(s) 528, 779, 889, 1403
RseI CAYNNNNRTG 2 cut(s) 1167, 1195
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 5 cut(s) 285, 342, 689, 1083, 1320
SatI GCNGC 8 cut(s) 372, 375, 498, 584, 1127, 1411, 1449, 1571
Sau3AI GATC 7 cut(s) 163, 490, 742, 907, 1039, 1239, 1435
Sau96I GGNCC 6 cut(s) 683, 948, 949, 1016, 1205, 1568
SchI GAGTC 3 cut(s) 255, 653, 763
ScrFI CCNGG 7 cut(s) 123, 225, 226, 320, 846, 1407, 1584
SduI GDGCHC 7 cut(s) 23, 121, 952, 1077, 1192, 1287, 1339
SfaNI GCATC 3 cut(s) 358, 1138, 1159
SfcI CTRYAG 4 cut(s) 204, 256, 495, 911
Sfr274I CTCGAG 1 cut(s) 16
SinI GGWCC 2 cut(s) 1016, 1205
SlaI CTCGAG 1 cut(s) 16
SmaI CCCGGG 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 1167, 1195
SmlI CTYRAG 3 cut(s) 16, 746, 859
SmoI CTYRAG 3 cut(s) 16, 746, 859
Sse9I AATT 8 cut(s) 312, 343, 442, 622, 870, 900, 933, 1001
SseBI AGGCCT 1 cut(s) 1471
SsiI CCGC 5 cut(s) 275, 770, 1446, 1449, 1571
SspI AATATT 1 cut(s) 1652
SspMI CTAG 6 cut(s) 785, 884, 1088, 1133, 1194, 1532
SstI GAGCTC 1 cut(s) 23
StuI AGGCCT 1 cut(s) 1471
StyD4I CCNGG 7 cut(s) 121, 223, 224, 318, 844, 1405, 1582
StyI CCWWGG 2 cut(s) 501, 1193
TaaI ACNGT 6 cut(s) 715, 778, 1051, 1223, 1425, 1442
TaiI ACGT 3 cut(s) 812, 1266, 1290
TaqI TCGA 2 cut(s) 17, 70
TasI AATT 8 cut(s) 312, 343, 442, 622, 870, 900, 933, 1001
TatI WGTACW 2 cut(s) 778, 888
TauI GCSGC 2 cut(s) 1451, 1573
TfiI GAWTC 2 cut(s) 139, 1150
Tru1I TTAA 5 cut(s) 285, 342, 689, 1083, 1320
Tru9I TTAA 5 cut(s) 285, 342, 689, 1083, 1320
TscAI CASTG 1 cut(s) 1276
TseFI GTSAC 6 cut(s) 82, 538, 1066, 1304, 1327, 1597
TseI GCWGC 6 cut(s) 371, 374, 497, 583, 1126, 1410
Tsp45I GTSAC 6 cut(s) 82, 538, 1066, 1304, 1327, 1597
TspDTI ATGAA 4 cut(s) 474, 502, 981, 1476
TspMI CCCGGG 1 cut(s) 224
TspRI CASTG 1 cut(s) 1276
Van91I CCANNNNNTGG 2 cut(s) 64, 271
VneI GTGCAC 1 cut(s) 1188
VpaK11BI GGWCC 2 cut(s) 1016, 1205
XagI CCTNNNNNAGG 1 cut(s) 1068
XapI RAATTY 2 cut(s) 312, 442
XbaI TCTAGA 1 cut(s) 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XhoI CTCGAG 1 cut(s) 16
XmaI CCCGGG 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 1193
XmiI GTMKAC 1 cut(s) 1545
XmnI GAANNNNTTC 1 cut(s) 1253
XspI CTAG 6 cut(s) 785, 884, 1088, 1133, 1194, 1532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.