Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000040

Physical Location & Seq

Genomic Coordinates Reverse (-)

39047344 .. 39056156

Gene Structure 8813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG302800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATTGAATGTGTTTTCTGTAGGCAGCAAATCCAGGCTCCATCTAATTTAAATATTTCTCTCAAAGGGCACACACCAAATGCTTTCGCAAGCATTATAGTGCTTTTAAAAGATCACACATTTTTGCTTTTCTGGGGATTGAAGTTCATAAACAAAGCATTCGGCCAGTATTTCCAAGAGATATATGTCAAATATAGTTGGAAACAAGACTTGGTGATGCGCTTGGTATTAAAAGGAATGTTGTATTATTCATTTTATGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

88

Amino Acids

10.39

Weight (kDa)

9.39

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00150 FvH4_2g13531 FvH4_2g21543 FvH4_3g32800 FvH4_3g32802 FvH4_4g00091 FvH4_4g00092 FvH4_5g22070 FvH4_5g31391 FvH4_6g11351 FvH4_6g23430 FvH4_6g23672 FvH4_6g52753
malus_domestica	MD03G1101500.v1.1 MD08G1234800.v1.1
pyrus_communis	pycom07g24860 pycom09g07860 pycom10g09330 pycom10g15360 pycom11g01600 pycom11g13460 pycom13g15580
rosa_chinensis	RchiOBHm_Chr1g0332021 RchiOBHm_Chr2g0095801 RchiOBHm_Chr2g0111771 RchiOBHm_Chr2g0127541 RchiOBHm_Chr2g0136581 RchiOBHm_Chr2g0136591 RchiOBHm_Chr2g0143311 RchiOBHm_Chr2g0145131 RchiOBHm_Chr2g0151391 RchiOBHm_Chr3g0468771 RchiOBHm_Chr3g0473281 RchiOBHm_Chr3g0481961 RchiOBHm_Chr4g0393741 RchiOBHm_Chr4g0397391 RchiOBHm_Chr4g0435991 RchiOBHm_Chr5g0015951 RchiOBHm_Chr5g0016651 RchiOBHm_Chr5g0039191 RchiOBHm_Chr5g0039211 RchiOBHm_Chr6g0254441 RchiOBHm_Chr6g0260911 RchiOBHm_Chr6g0274501 RchiOBHm_Chr6g0274511 RchiOBHm_Chr7g0184951 RchiOBHm_Chr7g0201701 RchiOBHm_Chr7g0201721 RchiOBHm_Chr7g0201731 RchiOBHm_Chr7g0234921 RchiOBHm_Chr7g0237841
rosa_laevigata	RLG00000001204 RLG00000001230 RLG00000001341 RLG00000001513 RLG00000001971 RLG00000002177 RLG00000002360 RLG00000003112 RLG00000003130 RLG00000003854 RLG00000008209 RLG00000008322 RLG00000008412 RLG00000008524 RLG00000009491 RLG00000009908 RLG00000011823 RLG00000013252 RLG00000013782 RLG00000013944 RLG00000014480 RLG00000019084 RLG00000019544 RLG00000019751 RLG00000020093 RLG00000020094 RLG00000020551 RLG00000020838 RLG00000020982 RLG00000021059 RLG00000022067 RLG00000022604 RLG00000022632 RLG00000022849 RLG00000023962 RLG00000025767 RLG00000026838 RLG00000027291 RLG00000028131 RLG00000028210 RLG00000028834 RLG00000030169 RLG00000031271 RLG00000032327 RLG00000033996 RLG00000034546 RLG00000034654 RLG00000034810 RLG00000035087 RLG00000036782
rosa_multiflora	Rmu_co8330487.1_g000001 Rmu_co8359977.1_g000001 Rmu_co8445341.1_g000001 Rmu_sc0000141.1_g000003 Rmu_sc0000353.1_g000018 Rmu_sc0000740.1_g000017 Rmu_sc0000744.1_g000138 Rmu_sc0000813.1_g000014 Rmu_sc0000908.1_g000003 Rmu_sc0000999.1_g000014 Rmu_sc0001103.1_g000001 Rmu_sc0001248.1_g000013 Rmu_sc0001282.1_g000021 Rmu_sc0001293.1_g000018 Rmu_sc0001608.1_g000015 Rmu_sc0001616.1_g000060 Rmu_sc0001851.1_g000013 Rmu_sc0001990.1_g000003 Rmu_sc0002138.1_g000002 Rmu_sc0002200.1_g000021 Rmu_sc0002230.1_g000029 Rmu_sc0002230.1_g000030 Rmu_sc0002702.1_g000017 Rmu_sc0002806.1_g000010 Rmu_sc0002809.1_g000023 Rmu_sc0002869.1_g000005 Rmu_sc0003156.1_g000027 Rmu_sc0003368.1_g000018 Rmu_sc0003642.1_g000007 Rmu_sc0003653.1_g000004 Rmu_sc0003791.1_g000008 Rmu_sc0003804.1_g000013 Rmu_sc0004015.1_g000022 Rmu_sc0004230.1_g000017 Rmu_sc0004368.1_g000011 Rmu_sc0004529.1_g000011 Rmu_sc0004540.1_g000011 Rmu_sc0005008.1_g000014 Rmu_sc0005171.1_g000001 Rmu_sc0005212.1_g000013 Rmu_sc0005947.1_g000003 Rmu_sc0006317.1_g000026 Rmu_sc0006578.1_g000005 Rmu_sc0006993.1_g000001 Rmu_sc0007442.1_g000002 Rmu_sc0007442.1_g000004 Rmu_sc0007876.1_g000004 Rmu_sc0007876.1_g000005 Rmu_sc0009624.1_g000004 Rmu_sc0009742.1_g000005 Rmu_sc0010306.1_g000007 Rmu_sc0011745.1_g000008 Rmu_sc0011800.1_g000003 Rmu_sc0012369.1_g000003 Rmu_sc0012787.1_g000003 Rmu_sc0012989.1_g000001 Rmu_sc0013416.1_g000003 Rmu_sc0021155.1_g000001 Rmu_sc0022372.1_g000001 Rmu_sc0023106.1_g000001 Rmu_sc0023684.1_g000003 Rmu_sc0023684.1_g000004 Rmu_sc0026897.1_g000001 Rmu_sc0027278.1_g000001 Rmu_sc0028533.1_g000001 Rmu_sc0028533.1_g000003 Rmu_sc0038440.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031730 Rroxscaffold_1G00033690 Rroxscaffold_1G00073100 Rroxscaffold_2G00079640 Rroxscaffold_2G00089760 Rroxscaffold_2G00091520 Rroxscaffold_2G00112420 Rroxscaffold_2G00115720 Rroxscaffold_2G00116170 Rroxscaffold_2G00116180 Rroxscaffold_2G00152590 Rroxscaffold_2G00155940 Rroxscaffold_3G00220010 Rroxscaffold_3G00234940 Rroxscaffold_3G00235250 Rroxscaffold_3G00237510 Rroxscaffold_3G00250950 Rroxscaffold_3G00250960 Rroxscaffold_3G00262030 Rroxscaffold_4G00299560 Rroxscaffold_4G00306000 Rroxscaffold_4G00311350 Rroxscaffold_4G00318530 Rroxscaffold_4G00329140 Rroxscaffold_5G00342020 Rroxscaffold_5G00350770 Rroxscaffold_5G00354620 Rroxscaffold_5G00354630 Rroxscaffold_5G00361180 Rroxscaffold_5G00377270 Rroxscaffold_6G00397870 Rroxscaffold_6G00397960 Rroxscaffold_6G00407290 Rroxscaffold_6G00408690 Rroxscaffold_6G00421900 Rroxscaffold_6G00421910 Rroxscaffold_7G00181630 Rroxscaffold_7G00182330 Rroxscaffold_7G00182340 Rroxscaffold_7G00212590 Rroxscaffold_7G00214060 Rroxscaffold_7G00214070 Rroxscaffold_7G00215940
rosa_rugosa	Rorug01G0052800 Rorug01G0052800 Rorug01G0075200 Rorug01G0090500 Rorug01G0091500 Rorug01G0106000 Rorug01G0309300 Rorug01G0309400.1 Rorug02G0092000 Rorug02G0128200 Rorug02G0152800 Rorug02G0366100 Rorug02G0401500 Rorug02G0465600 Rorug02G0474400 Rorug03G0322500 Rorug04G0044000 Rorug04G0044100 Rorug04G0064800.1 Rorug04G0077400 Rorug04G0094800 Rorug04G0094800 Rorug04G0111400 Rorug04G0137800 Rorug04G0137900 Rorug04G0138000 Rorug04G0138000 Rorug04G0446200 Rorug05G0090600 Rorug05G0239900 Rorug05G0284400 Rorug05G0534400 Rorug05G0561600 Rorug06G0098100 Rorug06G0098100 Rorug06G0134500 Rorug06G0238500 Rorug06G0238600 Rorug07G0228900 Rorug07G0229000 Rorug07G0291600 Rorug07G0291700
rosa_samantha	Rh1AG082200 Rh1AG129200 Rh1AG131500 Rh1AG159900 Rh1AG330800 Rh1AG408400 Rh1BG089600 Rh1CG086000 Rh1CG149200 Rh1CG405600 Rh1DG008200 Rh1DG015800 Rh1DG068000 Rh1DG118400 Rh1DG122500 Rh1DG202400 Rh1DG202500 Rh1DG266300 Rh1DG266400 Rh1DG287400 Rh1DG314700 Rh1DG314800 Rh2AG128400 Rh2AG128500 Rh2AG291000 Rh2AG347900 Rh2AG350700 Rh2AG415100 Rh2AG417200 Rh2AG497700 Rh2AG505000 Rh2AG507600 Rh2BG131300 Rh2BG233900 Rh2BG291700 Rh2BG291800 Rh2BG302700 Rh2BG302800 Rh2BG334700 Rh2BG334900 Rh2BG347000 Rh2BG347800 Rh2BG357100 Rh2BG528200 Rh2BG528300 Rh2BG603700 Rh2CG032300 Rh2CG034300 Rh2CG232600 Rh2CG483700 Rh2DG077400 Rh2DG103100 Rh2DG103200 Rh2DG287000 Rh2DG287200 Rh2DG375000 Rh2DG382700 Rh2DG537400 Rh2DG602900 Rh2DG603000 Rh3AG080800 Rh3AG217300 Rh3AG321800 Rh3BG082700 Rh3BG082800 Rh3BG168600 Rh3BG185900 Rh3BG224400 Rh3BG250500 Rh3BG260700 Rh3BG351300 Rh3BG353600 Rh3BG353700 Rh3CG082900 Rh3CG083000 Rh3CG176200 Rh3CG176300 Rh3CG219400 Rh3CG219500 Rh3CG254600 Rh3CG254700 Rh3CG256000 Rh3CG256100 Rh3CG257400 Rh3CG356200 Rh3CG356300 Rh3DG084300 Rh4AG030500 Rh4BG132300 Rh4BG139800 Rh4BG140000 Rh4CG027200 Rh4CG033100 Rh4CG033200 Rh4CG069600 Rh4CG103300 Rh4CG322600 Rh4DG028500 Rh4DG081000 Rh4DG190200 Rh4DG193500 Rh4DG212900 Rh4DG303900 Rh4DG342900 Rh5AG131000 Rh5AG166800 Rh5AG167000 Rh5AG201600 Rh5AG372200 Rh5AG372300 Rh5AG417900 Rh5BG082500 Rh5BG171200 Rh5BG171300 Rh5BG180300 Rh5BG194400 Rh5BG302800 Rh5BG343300 Rh5BG402700 Rh5BG428500 Rh5CG190700 Rh5CG190800 Rh5CG219100 Rh5CG451900 Rh5DG175200 Rh5DG175400 Rh5DG177000 Rh5DG177100 Rh5DG356000 Rh5DG356100 Rh5DG493500 Rh6AG006700 Rh6AG051700 Rh6AG064100 Rh6AG064200 Rh6AG064500 Rh6AG092800 Rh6AG152000 Rh6AG152100 Rh6AG291900 Rh6AG419000 Rh6AG465900 Rh6AG466000 Rh6BG125000 Rh6BG160600 Rh6BG161800 Rh6BG359100 Rh6BG359200 Rh6CG071400 Rh6CG071500 Rh6CG103500 Rh6CG103600 Rh6CG117200 Rh6CG123700 Rh6CG123800 Rh6CG156600 Rh6CG192500 Rh6CG208600 Rh6CG208700 Rh6CG365200 Rh6DG146200 Rh6DG146800 Rh6DG193200 Rh6DG193300 Rh6DG193400 Rh6DG349200 Rh7AG251100 Rh7AG259300 Rh7AG425100 Rh7BG262700 Rh7BG262900 Rh7BG369500 Rh7CG107400 Rh7CG107500 Rh7CG257400 Rh7CG267300 Rh7DG070500 Rh7DG105000 Rh7DG198500 Rh7DG291300 Rh7DG480600
rosa_wichuraiana	Rw2G027920 Rw3G014750 Rw3G021490 Rw4G001910 Rw6G013120 Rw6G020040 Rw6G022930 Rw6G041900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	8, 142
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	222
CviJI	RGCY	2 cut(s)	38, 165
CviKI_1	RGCY	2 cut(s)	38, 165
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DraI	TTTAAA	2 cut(s)	51, 108
EaeI	YGGCCR	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	33
FaiI	YATR	6 cut(s)	98, 149, 184, 186, 195, 258
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	226
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	20, 47, 118, 179
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	207
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	179
MseI	TTAA	3 cut(s)	50, 107, 230
MslI	CAYNNNNRTG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	50, 107, 230
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	19
SgeI	CNNG	9 cut(s)	46, 47, 102, 145, 178, 188, 218, 223, 235
SmiI	ATTTAAAT	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	46
SspI	AATATT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	33
SwaI	ATTTAAAT	1 cut(s)	51
TasI	AATT	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	50, 107, 230
Tru9I	TTAA	3 cut(s)	50, 107, 230
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	136, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.