Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 205 |
| AclWI | GGATC | 1 cut(s) | 619 |
| AcsI | RAATTY | 2 cut(s) | 42, 87 |
| AfaI | GTAC | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 409 |
| AgsI | TTSAA | 6 cut(s) | 12, 86, 277, 322, 395, 530 |
| AjnI | CCWGG | 1 cut(s) | 438 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 434, 466 |
| AluBI | AGCT | 6 cut(s) | 133, 349, 377, 398, 431, 554 |
| AluI | AGCT | 6 cut(s) | 133, 349, 377, 398, 431, 554 |
| AlwI | GGATC | 1 cut(s) | 619 |
| AoxI | GGCC | 1 cut(s) | 279 |
| ApeKI | GCWGC | 2 cut(s) | 398, 431 |
| ApoI | RAATTY | 2 cut(s) | 42, 87 |
| AseI | ATTAAT | 1 cut(s) | 21 |
| AsuHPI | GGTGA | 1 cut(s) | 170 |
| BbvI | GCAGC | 2 cut(s) | 385, 418 |
| BccI | CCATC | 3 cut(s) | 490, 534, 647 |
| BciT130I | CCWGG | 1 cut(s) | 440 |
| BfaI | CTAG | 1 cut(s) | 518 |
| BisI | GCNGC | 3 cut(s) | 205, 399, 432 |
| BlsI | GCNGC | 3 cut(s) | 206, 400, 433 |
| Bme1390I | CCNGG | 1 cut(s) | 440 |
| BmrFI | CCNGG | 1 cut(s) | 440 |
| BmsI | GCATC | 3 cut(s) | 88, 247, 587 |
| BoxI | GACNNNNGTC | 1 cut(s) | 218 |
| BpmI | CTGGAG | 1 cut(s) | 70 |
| BpuEI | CTTGAG | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 1 cut(s) | 144 |
| BsaWI | WCCGGW | 1 cut(s) | 215 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 409 |
| Bse1I | ACTGG | 1 cut(s) | 329 |
| Bse3DI | GCAATG | 2 cut(s) | 138, 498 |
| BseBI | CCWGG | 1 cut(s) | 440 |
| BseDI | CCNNGG | 1 cut(s) | 144 |
| BseGI | GGATG | 2 cut(s) | 43, 549 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BseMI | GCAATG | 2 cut(s) | 138, 498 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseNI | ACTGG | 1 cut(s) | 329 |
| BseRI | GAGGAG | 2 cut(s) | 77, 382 |
| BseXI | GCAGC | 2 cut(s) | 385, 418 |
| BseYI | CCCAGC | 2 cut(s) | 133, 634 |
| Bsh1285I | CGRYCG | 1 cut(s) | 216 |
| BshFI | GGCC | 1 cut(s) | 281 |
| BsiEI | CGRYCG | 1 cut(s) | 216 |
| BsiSI | CCGG | 1 cut(s) | 216 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BsmI | GAATGC | 1 cut(s) | 167 |
| BsnI | GGCC | 1 cut(s) | 281 |
| Bsp143I | GATC | 1 cut(s) | 624 |
| Bsp19I | CCATGG | 1 cut(s) | 144 |
| BspACI | CCGC | 1 cut(s) | 205 |
| BspANI | GGCC | 1 cut(s) | 281 |
| BspCNI | CTCAG | 1 cut(s) | 234 |
| BspPI | GGATC | 1 cut(s) | 619 |
| BsrDI | GCAATG | 2 cut(s) | 138, 498 |
| BsrI | ACTGG | 1 cut(s) | 329 |
| BssECI | CCNNGG | 1 cut(s) | 144 |
| BssMI | GATC | 1 cut(s) | 624 |
| BssT1I | CCWWGG | 1 cut(s) | 144 |
| Bst2UI | CCWGG | 1 cut(s) | 440 |
| Bst4CI | ACNGT | 2 cut(s) | 16, 58 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 1 cut(s) | 242 |
| BstDSI | CCRYGG | 1 cut(s) | 144 |
| BstF5I | GGATG | 2 cut(s) | 43, 549 |
| BstKTI | GATC | 1 cut(s) | 627 |
| BstMBI | GATC | 1 cut(s) | 624 |
| BstMCI | CGRYCG | 1 cut(s) | 216 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 201, 497 |
| BstNI | CCWGG | 1 cut(s) | 440 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 218 |
| BstSCI | CCNGG | 1 cut(s) | 438 |
| BstV1I | GCAGC | 2 cut(s) | 385, 418 |
| BsuRI | GGCC | 1 cut(s) | 281 |
| BtgI | CCRYGG | 1 cut(s) | 144 |
| BtsCI | GGATG | 2 cut(s) | 43, 549 |
| BtsIMutI | CAGTG | 1 cut(s) | 21 |
| Csp6I | GTAC | 1 cut(s) | 67 |
| CviAII | CATG | 2 cut(s) | 145, 315 |
| CviQI | GTAC | 1 cut(s) | 67 |
| DdeI | CTNAG | 1 cut(s) | 242 |
| DpnI | GATC | 1 cut(s) | 626 |
| DpnII | GATC | 1 cut(s) | 624 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 1 cut(s) | 144 |
| EcoRII | CCWGG | 1 cut(s) | 438 |
| EcoT14I | CCWWGG | 1 cut(s) | 144 |
| EcoT22I | ATGCAT | 1 cut(s) | 103 |
| ErhI | CCWWGG | 1 cut(s) | 144 |
| FaeI | CATG | 2 cut(s) | 148, 318 |
| FatI | CATG | 2 cut(s) | 144, 314 |
| Fnu4HI | GCNGC | 3 cut(s) | 205, 399, 432 |
| FokI | GGATG | 2 cut(s) | 50, 556 |
| Fsp4HI | GCNGC | 3 cut(s) | 205, 399, 432 |
| FspBI | CTAG | 1 cut(s) | 518 |
| GluI | GCNGC | 3 cut(s) | 205, 399, 432 |
| GsaI | CCCAGC | 2 cut(s) | 137, 638 |
| GsuI | CTGGAG | 1 cut(s) | 70 |
| HaeIII | GGCC | 1 cut(s) | 281 |
| HapII | CCGG | 1 cut(s) | 216 |
| Hin1II | CATG | 2 cut(s) | 148, 318 |
| HindIII | AAGCTT | 1 cut(s) | 347 |
| HinfI | GANTC | 3 cut(s) | 82, 152, 219 |
| HpaII | CCGG | 1 cut(s) | 216 |
| HphI | GGTGA | 1 cut(s) | 170 |
| Hpy166II | GTNNAC | 2 cut(s) | 453, 617 |
| Hpy188I | TCNGA | 1 cut(s) | 243 |
| Hpy188III | TCNNGA | 2 cut(s) | 31, 49 |
| Hpy8I | GTNNAC | 2 cut(s) | 453, 617 |
| HpyAV | CCTTC | 3 cut(s) | 271, 418, 505 |
| HpyCH4III | ACNGT | 2 cut(s) | 16, 58 |
| HpyCH4V | TGCA | 2 cut(s) | 101, 238 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 201, 497 |
| HpyF3I | CTNAG | 1 cut(s) | 242 |
| Hsp92II | CATG | 2 cut(s) | 148, 318 |
| Kzo9I | GATC | 1 cut(s) | 624 |
| LmnI | GCTCC | 1 cut(s) | 466 |
| LpnPI | CCDG | 9 cut(s) | 34, 119, 141, 229, 310, 425, 452, 540, 648 |
| Lsp1109I | GCAGC | 2 cut(s) | 385, 418 |
| LweI | GCATC | 3 cut(s) | 88, 247, 587 |
| MaeI | CTAG | 1 cut(s) | 518 |
| MalI | GATC | 1 cut(s) | 626 |
| MboI | GATC | 1 cut(s) | 624 |
| MboII | GAAGA | 2 cut(s) | 161, 517 |
| MluCI | AATT | 6 cut(s) | 42, 87, 161, 272, 390, 417 |
| MlyI | GAGTC | 2 cut(s) | 161, 228 |
| MnlI | CCTC | 8 cut(s) | 27, 45, 55, 191, 245, 360, 403, 481 |
| Mph1103I | ATGCAT | 1 cut(s) | 103 |
| MseI | TTAA | 2 cut(s) | 21, 474 |
| MslI | CAYNNNNRTG | 1 cut(s) | 143 |
| MspI | CCGG | 1 cut(s) | 216 |
| MspR9I | CCNGG | 1 cut(s) | 440 |
| Mva1269I | GAATGC | 1 cut(s) | 167 |
| MvaI | CCWGG | 1 cut(s) | 440 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 201, 497 |
| NcoI | CCATGG | 1 cut(s) | 144 |
| NdeII | GATC | 1 cut(s) | 624 |
| NlaIII | CATG | 2 cut(s) | 148, 318 |
| NsiI | ATGCAT | 1 cut(s) | 103 |
| PctI | GAATGC | 1 cut(s) | 167 |
| PfeI | GAWTC | 1 cut(s) | 82 |
| PkrI | GCNGC | 3 cut(s) | 206, 400, 433 |
| PleI | GAGTC | 2 cut(s) | 160, 227 |
| PpsI | GAGTC | 2 cut(s) | 160, 227 |
| PshAI | GACNNNNGTC | 1 cut(s) | 218 |
| PshBI | ATTAAT | 1 cut(s) | 21 |
| Psp6I | CCWGG | 1 cut(s) | 438 |
| PspFI | CCCAGC | 2 cut(s) | 133, 634 |
| PspGI | CCWGG | 1 cut(s) | 438 |
| RsaI | GTAC | 1 cut(s) | 68 |
| RsaNI | GTAC | 1 cut(s) | 67 |
| RseI | CAYNNNNRTG | 1 cut(s) | 143 |
| SaqAI | TTAA | 2 cut(s) | 21, 474 |
| SatI | GCNGC | 3 cut(s) | 205, 399, 432 |
| Sau3AI | GATC | 1 cut(s) | 624 |
| SchI | GAGTC | 2 cut(s) | 161, 228 |
| ScrFI | CCNGG | 1 cut(s) | 440 |
| SetI | ASST | 8 cut(s) | 135, 351, 379, 400, 433, 441, 556, 613 |
| SfaNI | GCATC | 3 cut(s) | 88, 247, 587 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 1 cut(s) | 31 |
| SmoI | CTYRAG | 1 cut(s) | 31 |
| Sse9I | AATT | 6 cut(s) | 42, 87, 161, 272, 390, 417 |
| SsiI | CCGC | 1 cut(s) | 205 |
| SspMI | CTAG | 1 cut(s) | 518 |
| StyD4I | CCNGG | 1 cut(s) | 438 |
| StyI | CCWWGG | 1 cut(s) | 144 |
| TaaI | ACNGT | 2 cut(s) | 16, 58 |
| TasI | AATT | 6 cut(s) | 42, 87, 161, 272, 390, 417 |
| TatI | WGTACW | 1 cut(s) | 66 |
| TauI | GCSGC | 1 cut(s) | 207 |
| TfiI | GAWTC | 1 cut(s) | 82 |
| Tru1I | TTAA | 2 cut(s) | 21, 474 |
| Tru9I | TTAA | 2 cut(s) | 21, 474 |
| TscAI | CASTG | 1 cut(s) | 21 |
| TseI | GCWGC | 2 cut(s) | 398, 431 |
| TspDTI | ATGAA | 5 cut(s) | 54, 220, 348, 524, 560 |
| TspRI | CASTG | 1 cut(s) | 21 |
| VspI | ATTAAT | 1 cut(s) | 21 |
| XapI | RAATTY | 2 cut(s) | 42, 87 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 321 |
| XspI | CTAG | 1 cut(s) | 518 |
| Zsp2I | ATGCAT | 1 cut(s) | 103 |