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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 155 |
| AccBSI | CCGCTC | 1 cut(s) | 319 |
| AciI | CCGC | 2 cut(s) | 50, 317 |
| AclWI | GGATC | 1 cut(s) | 207 |
| AcoI | YGGCCR | 1 cut(s) | 235 |
| AcuI | CTGAAG | 1 cut(s) | 524 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 258, 376, 673 |
| AgsI | TTSAA | 4 cut(s) | 334, 431, 554, 649 |
| AjnI | CCWGG | 2 cut(s) | 257, 490 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 641, 673 |
| AluBI | AGCT | 2 cut(s) | 271, 423 |
| AluI | AGCT | 2 cut(s) | 271, 423 |
| AlwI | GGATC | 1 cut(s) | 207 |
| AoxI | GGCC | 2 cut(s) | 235, 371 |
| ApeKI | GCWGC | 1 cut(s) | 593 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 224, 256 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 2 cut(s) | 278, 397 |
| AsuNHI | GCTAGC | 1 cut(s) | 640 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BanII | GRGCYC | 1 cut(s) | 407 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 522, 554 |
| BauI | CACGAG | 1 cut(s) | 574 |
| BbvI | GCAGC | 1 cut(s) | 605 |
| BccI | CCATC | 6 cut(s) | 55, 132, 217, 257, 283, 445 |
| BceAI | ACGGC | 2 cut(s) | 250, 605 |
| BciT130I | CCWGG | 2 cut(s) | 259, 492 |
| BfaI | CTAG | 1 cut(s) | 641 |
| BisI | GCNGC | 1 cut(s) | 594 |
| BlsI | GCNGC | 1 cut(s) | 595 |
| Bme1390I | CCNGG | 2 cut(s) | 259, 492 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmrFI | CCNGG | 2 cut(s) | 259, 492 |
| BmrI | ACTGGG | 2 cut(s) | 19, 24 |
| BmsI | GCATC | 3 cut(s) | 159, 227, 542 |
| BmtI | GCTAGC | 1 cut(s) | 644 |
| BmuI | ACTGGG | 2 cut(s) | 19, 24 |
| BpmI | CTGGAG | 2 cut(s) | 241, 489 |
| Bpu10I | CCTNAGC | 1 cut(s) | 214 |
| BsaJI | CCNNGG | 2 cut(s) | 164, 258 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 258, 376, 673 |
| Bse1I | ACTGG | 7 cut(s) | 19, 25, 149, 238, 339, 472, 515 |
| Bse3DI | GCAATG | 1 cut(s) | 118 |
| BseBI | CCWGG | 2 cut(s) | 259, 492 |
| BseDI | CCNNGG | 2 cut(s) | 164, 258 |
| BseGI | GGATG | 8 cut(s) | 66, 91, 124, 174, 187, 209, 268, 610 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 258, 376, 673 |
| BseMI | GCAATG | 1 cut(s) | 118 |
| BseMII | CTCAG | 1 cut(s) | 558 |
| BseNI | ACTGG | 7 cut(s) | 19, 25, 149, 238, 339, 472, 515 |
| BseXI | GCAGC | 1 cut(s) | 605 |
| BshFI | GGCC | 2 cut(s) | 237, 373 |
| BsiSI | CCGG | 1 cut(s) | 370 |
| BslFI | GGGAC | 3 cut(s) | 19, 25, 327 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 258, 376, 673 |
| BsmFI | GGGAC | 3 cut(s) | 19, 25, 327 |
| BsnI | GGCC | 2 cut(s) | 237, 373 |
| Bsp1286I | GDGCHC | 1 cut(s) | 407 |
| Bsp143I | GATC | 2 cut(s) | 199, 570 |
| BspACI | CCGC | 2 cut(s) | 50, 317 |
| BspANI | GGCC | 2 cut(s) | 237, 373 |
| BspCNI | CTCAG | 1 cut(s) | 559 |
| BspOI | GCTAGC | 1 cut(s) | 644 |
| BspPI | GGATC | 1 cut(s) | 207 |
| BsrBI | CCGCTC | 1 cut(s) | 319 |
| BsrDI | GCAATG | 1 cut(s) | 118 |
| BsrI | ACTGG | 7 cut(s) | 19, 25, 149, 238, 339, 472, 515 |
| BssECI | CCNNGG | 2 cut(s) | 164, 258 |
| BssMI | GATC | 2 cut(s) | 199, 570 |
| BssSI | CACGAG | 1 cut(s) | 574 |
| Bst2BI | CACGAG | 1 cut(s) | 574 |
| Bst2UI | CCWGG | 2 cut(s) | 259, 492 |
| Bst6I | CTCTTC | 1 cut(s) | 317 |
| BstC8I | GCNNGC | 2 cut(s) | 618, 642 |
| BstDEI | CTNAG | 2 cut(s) | 214, 567 |
| BstF5I | GGATG | 8 cut(s) | 66, 91, 124, 174, 187, 209, 268, 610 |
| BstKTI | GATC | 2 cut(s) | 202, 573 |
| BstMBI | GATC | 2 cut(s) | 199, 570 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 563 |
| BstNI | CCWGG | 2 cut(s) | 259, 492 |
| BstSCI | CCNGG | 2 cut(s) | 257, 490 |
| BstV1I | GCAGC | 1 cut(s) | 605 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BsuRI | GGCC | 2 cut(s) | 237, 373 |
| BtgZI | GCGATG | 1 cut(s) | 540 |
| BtsCI | GGATG | 8 cut(s) | 66, 91, 124, 174, 187, 209, 268, 610 |
| BtsI | GCAGTG | 1 cut(s) | 362 |
| BtsIMutI | CAGTG | 1 cut(s) | 362 |
| Cac8I | GCNNGC | 2 cut(s) | 618, 642 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| CviAII | CATG | 1 cut(s) | 673 |
| DdeI | CTNAG | 2 cut(s) | 214, 567 |
| DpnI | GATC | 2 cut(s) | 201, 572 |
| DpnII | GATC | 2 cut(s) | 199, 570 |
| EaeI | YGGCCR | 1 cut(s) | 235 |
| Eam1104I | CTCTTC | 1 cut(s) | 317 |
| EarI | CTCTTC | 1 cut(s) | 317 |
| Eco24I | GRGCYC | 1 cut(s) | 407 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 1 cut(s) | 524 |
| EcoRII | CCWGG | 2 cut(s) | 257, 490 |
| EcoT38I | GRGCYC | 1 cut(s) | 407 |
| FaeI | CATG | 1 cut(s) | 676 |
| FaiI | YATR | 5 cut(s) | 81, 155, 463, 674, 679 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 546, 578 |
| FaqI | GGGAC | 3 cut(s) | 19, 25, 327 |
| FatI | CATG | 1 cut(s) | 672 |
| FauI | CCCGC | 2 cut(s) | 43, 324 |
| Fnu4HI | GCNGC | 1 cut(s) | 594 |
| FokI | GGATG | 8 cut(s) | 73, 98, 111, 181, 194, 196, 275, 617 |
| FriOI | GRGCYC | 1 cut(s) | 407 |
| Fsp4HI | GCNGC | 1 cut(s) | 594 |
| FspBI | CTAG | 1 cut(s) | 641 |
| GluI | GCNGC | 1 cut(s) | 594 |
| GsuI | CTGGAG | 2 cut(s) | 241, 489 |
| HaeIII | GGCC | 2 cut(s) | 237, 373 |
| HapII | CCGG | 1 cut(s) | 370 |
| Hin1II | CATG | 1 cut(s) | 676 |
| HincII | GTYRAC | 1 cut(s) | 582 |
| HindII | GTYRAC | 1 cut(s) | 582 |
| HinfI | GANTC | 3 cut(s) | 19, 254, 431 |
| HpaII | CCGG | 1 cut(s) | 370 |
| HphI | GGTGA | 2 cut(s) | 278, 397 |
| Hpy166II | GTNNAC | 1 cut(s) | 582 |
| Hpy188I | TCNGA | 4 cut(s) | 253, 285, 409, 547 |
| Hpy188III | TCNNGA | 2 cut(s) | 230, 574 |
| Hpy8I | GTNNAC | 1 cut(s) | 582 |
| Hpy99I | CGWCG | 1 cut(s) | 236 |
| HpyAV | CCTTC | 3 cut(s) | 256, 307, 335 |
| HpyCH4V | TGCA | 3 cut(s) | 172, 506, 672 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 563 |
| HpyF3I | CTNAG | 2 cut(s) | 214, 567 |
| Hsp92II | CATG | 1 cut(s) | 676 |
| Kzo9I | GATC | 2 cut(s) | 199, 570 |
| LmnI | GCTCC | 3 cut(s) | 211, 372, 420 |
| Lsp1109I | GCAGC | 1 cut(s) | 605 |
| LweI | GCATC | 3 cut(s) | 159, 227, 542 |
| MaeI | CTAG | 1 cut(s) | 641 |
| MalI | GATC | 2 cut(s) | 201, 572 |
| MbiI | CCGCTC | 1 cut(s) | 319 |
| MboI | GATC | 2 cut(s) | 199, 570 |
| MboII | GAAGA | 2 cut(s) | 298, 304 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MhlI | GDGCHC | 1 cut(s) | 407 |
| MluCI | AATT | 2 cut(s) | 91, 352 |
| MlyI | GAGTC | 1 cut(s) | 248 |
| MmeI | TCCRAC | 1 cut(s) | 276 |
| MseI | TTAA | 3 cut(s) | 33, 95, 186 |
| MspI | CCGG | 1 cut(s) | 370 |
| MspR9I | CCNGG | 2 cut(s) | 259, 492 |
| MvaI | CCWGG | 2 cut(s) | 259, 492 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 563 |
| NdeII | GATC | 2 cut(s) | 199, 570 |
| NheI | GCTAGC | 1 cut(s) | 640 |
| NlaIII | CATG | 1 cut(s) | 676 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 249 |
| PfeI | GAWTC | 2 cut(s) | 19, 431 |
| PfoI | TCCNGGA | 1 cut(s) | 490 |
| PkrI | GCNGC | 1 cut(s) | 595 |
| PleI | GAGTC | 1 cut(s) | 248 |
| PpsI | GAGTC | 1 cut(s) | 248 |
| PsiI | TTATAA | 1 cut(s) | 155 |
| Psp6I | CCWGG | 2 cut(s) | 257, 490 |
| PspGI | CCWGG | 2 cut(s) | 257, 490 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| SaqAI | TTAA | 3 cut(s) | 33, 95, 186 |
| SatI | GCNGC | 1 cut(s) | 594 |
| Sau3AI | GATC | 2 cut(s) | 199, 570 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| SchI | GAGTC | 1 cut(s) | 248 |
| ScrFI | CCNGG | 2 cut(s) | 259, 492 |
| SduI | GDGCHC | 1 cut(s) | 407 |
| SetI | ASST | 4 cut(s) | 273, 327, 425, 581 |
| SfaNI | GCATC | 3 cut(s) | 159, 227, 542 |
| SinI | GGWCC | 1 cut(s) | 146 |
| Sse9I | AATT | 2 cut(s) | 91, 352 |
| SsiI | CCGC | 2 cut(s) | 50, 317 |
| SspI | AATATT | 1 cut(s) | 399 |
| SspMI | CTAG | 1 cut(s) | 641 |
| StyD4I | CCNGG | 2 cut(s) | 257, 490 |
| TaqII | GACCGA | 1 cut(s) | 178 |
| TasI | AATT | 2 cut(s) | 91, 352 |
| TfiI | GAWTC | 2 cut(s) | 19, 431 |
| Tru1I | TTAA | 3 cut(s) | 33, 95, 186 |
| Tru9I | TTAA | 3 cut(s) | 33, 95, 186 |
| TscAI | CASTG | 1 cut(s) | 369 |
| TseI | GCWGC | 1 cut(s) | 593 |
| TspDTI | ATGAA | 1 cut(s) | 263 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| TspRI | CASTG | 1 cut(s) | 369 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XspI | CTAG | 1 cut(s) | 641 |