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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 856 |
| AccI | GTMKAC | 1 cut(s) | 201 |
| AccII | CGCG | 1 cut(s) | 532 |
| AclWI | GGATC | 2 cut(s) | 215, 857 |
| AcsI | RAATTY | 2 cut(s) | 263, 714 |
| AcuI | CTGAAG | 2 cut(s) | 183, 295 |
| AdeI | CACNNNGTG | 1 cut(s) | 653 |
| AfaI | GTAC | 1 cut(s) | 274 |
| AflII | CTTAAG | 2 cut(s) | 446, 628 |
| AflIII | ACRYGT | 3 cut(s) | 377, 530, 652 |
| AgeI | ACCGGT | 1 cut(s) | 101 |
| AgsI | TTSAA | 3 cut(s) | 331, 360, 414 |
| AluBI | AGCT | 5 cut(s) | 238, 254, 309, 680, 880 |
| AluI | AGCT | 5 cut(s) | 238, 254, 309, 680, 880 |
| Alw26I | GTCTC | 3 cut(s) | 20, 521, 815 |
| AlwI | GGATC | 2 cut(s) | 215, 857 |
| AoxI | GGCC | 3 cut(s) | 193, 322, 520 |
| ApaI | GGGCCC | 1 cut(s) | 524 |
| ApeKI | GCWGC | 1 cut(s) | 677 |
| ApoI | RAATTY | 2 cut(s) | 263, 714 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 454, 486 |
| AsiGI | ACCGGT | 1 cut(s) | 101 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 308 |
| AspS9I | GGNCC | 2 cut(s) | 520, 521 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 193, 766 |
| BaeGI | GKGCMC | 1 cut(s) | 524 |
| BanII | GRGCYC | 1 cut(s) | 524 |
| BbvCI | CCTCAGC | 1 cut(s) | 234 |
| BbvI | GCAGC | 1 cut(s) | 689 |
| BccI | CCATC | 3 cut(s) | 38, 46, 386 |
| BceAI | ACGGC | 1 cut(s) | 337 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 116, 150 |
| BciVI | GTATCC | 1 cut(s) | 542 |
| BcoDI | GTCTC | 3 cut(s) | 20, 521, 815 |
| BfaI | CTAG | 3 cut(s) | 429, 711, 720 |
| BfrI | CTTAAG | 2 cut(s) | 446, 628 |
| BfuAI | ACCTGC | 1 cut(s) | 856 |
| BfuI | GTATCC | 1 cut(s) | 542 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 321 |
| BisI | GCNGC | 1 cut(s) | 678 |
| BlsI | GCNGC | 1 cut(s) | 679 |
| BmcAI | AGTACT | 1 cut(s) | 274 |
| BmgT120I | GGNCC | 2 cut(s) | 520, 521 |
| BmiI | GGNNCC | 1 cut(s) | 522 |
| BmsI | GCATC | 2 cut(s) | 4, 445 |
| BpmI | CTGGAG | 2 cut(s) | 106, 819 |
| Bpu10I | CCTNAGC | 1 cut(s) | 234 |
| Bsa29I | ATCGAT | 1 cut(s) | 759 |
| BsaBI | GATNNNNATC | 1 cut(s) | 590 |
| BsaI | GGTCTC | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 1 cut(s) | 915 |
| BsaWI | WCCGGW | 1 cut(s) | 101 |
| Bse118I | RCCGGY | 1 cut(s) | 101 |
| Bse3DI | GCAATG | 1 cut(s) | 847 |
| Bse8I | GATNNNNATC | 1 cut(s) | 590 |
| BseCI | ATCGAT | 1 cut(s) | 759 |
| BseDI | CCNNGG | 1 cut(s) | 915 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseJI | GATNNNNATC | 1 cut(s) | 590 |
| BseMI | GCAATG | 1 cut(s) | 847 |
| BseMII | CTCAG | 2 cut(s) | 248, 516 |
| BseRI | GAGGAG | 3 cut(s) | 62, 818, 843 |
| BseSI | GKGCMC | 1 cut(s) | 524 |
| BseXI | GCAGC | 1 cut(s) | 689 |
| Bsh1236I | CGCG | 1 cut(s) | 532 |
| BshFI | GGCC | 3 cut(s) | 195, 324, 522 |
| BshTI | ACCGGT | 1 cut(s) | 101 |
| BshVI | ATCGAT | 1 cut(s) | 759 |
| BsiSI | CCGG | 1 cut(s) | 102 |
| BsmAI | GTCTC | 3 cut(s) | 20, 521, 815 |
| BsmBI | CGTCTC | 1 cut(s) | 521 |
| BsnI | GGCC | 3 cut(s) | 195, 324, 522 |
| Bso31I | GGTCTC | 1 cut(s) | 20 |
| Bsp120I | GGGCCC | 1 cut(s) | 520 |
| Bsp1286I | GDGCHC | 1 cut(s) | 524 |
| Bsp143I | GATC | 3 cut(s) | 220, 756, 862 |
| BspANI | GGCC | 3 cut(s) | 195, 324, 522 |
| BspCNI | CTCAG | 2 cut(s) | 247, 517 |
| BspDI | ATCGAT | 1 cut(s) | 759 |
| BspFNI | CGCG | 1 cut(s) | 532 |
| BspLI | GGNNCC | 1 cut(s) | 522 |
| BspMI | ACCTGC | 1 cut(s) | 856 |
| BspPI | GGATC | 2 cut(s) | 215, 857 |
| BspQI | GCTCTTC | 1 cut(s) | 299 |
| BspTI | CTTAAG | 2 cut(s) | 446, 628 |
| BspTNI | GGTCTC | 1 cut(s) | 20 |
| BsrDI | GCAATG | 1 cut(s) | 847 |
| BsrFI | RCCGGY | 1 cut(s) | 101 |
| BssAI | RCCGGY | 1 cut(s) | 101 |
| BssECI | CCNNGG | 1 cut(s) | 915 |
| BssMI | GATC | 3 cut(s) | 220, 756, 862 |
| BssNAI | GTATAC | 1 cut(s) | 202 |
| BssT1I | CCWWGG | 1 cut(s) | 915 |
| Bst1107I | GTATAC | 1 cut(s) | 202 |
| Bst6I | CTCTTC | 2 cut(s) | 299, 685 |
| BstAFI | CTTAAG | 2 cut(s) | 446, 628 |
| BstDEI | CTNAG | 5 cut(s) | 234, 239, 255, 525, 836 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstFNI | CGCG | 1 cut(s) | 532 |
| BstKTI | GATC | 3 cut(s) | 223, 759, 865 |
| BstMAI | GTCTC | 3 cut(s) | 20, 521, 815 |
| BstMBI | GATC | 3 cut(s) | 220, 756, 862 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 321, 569, 644 |
| BstNSI | RCATGY | 2 cut(s) | 381, 727 |
| BstSLI | GKGCMC | 1 cut(s) | 524 |
| BstUI | CGCG | 1 cut(s) | 532 |
| BstV1I | GCAGC | 1 cut(s) | 689 |
| BstX2I | RGATCY | 1 cut(s) | 220 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 602 |
| BstYI | RGATCY | 1 cut(s) | 220 |
| BstZ17I | GTATAC | 1 cut(s) | 202 |
| Bsu15I | ATCGAT | 1 cut(s) | 759 |
| BsuI | GTATCC | 1 cut(s) | 542 |
| BsuRI | GGCC | 3 cut(s) | 195, 324, 522 |
| BsuTUI | ATCGAT | 1 cut(s) | 759 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| BveI | ACCTGC | 1 cut(s) | 856 |
| Cfr10I | RCCGGY | 1 cut(s) | 101 |
| Cfr13I | GGNCC | 2 cut(s) | 520, 521 |
| ClaI | ATCGAT | 1 cut(s) | 759 |
| CseI | GACGC | 1 cut(s) | 538 |
| Csp6I | GTAC | 1 cut(s) | 273 |
| CspAI | ACCGGT | 1 cut(s) | 101 |
| CviAII | CATG | 5 cut(s) | 19, 139, 378, 385, 724 |
| CviQI | GTAC | 1 cut(s) | 273 |
| DdeI | CTNAG | 5 cut(s) | 234, 239, 255, 525, 836 |
| DpnI | GATC | 3 cut(s) | 222, 758, 864 |
| DpnII | GATC | 3 cut(s) | 220, 756, 862 |
| DraI | TTTAAA | 1 cut(s) | 79 |
| DraIII | CACNNNGTG | 1 cut(s) | 653 |
| Eam1104I | CTCTTC | 2 cut(s) | 299, 685 |
| EarI | CTCTTC | 2 cut(s) | 299, 685 |
| Eco130I | CCWWGG | 1 cut(s) | 915 |
| Eco24I | GRGCYC | 1 cut(s) | 524 |
| Eco31I | GGTCTC | 1 cut(s) | 20 |
| Eco32I | GATATC | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 2 cut(s) | 183, 295 |
| EcoO109I | RGGNCCY | 1 cut(s) | 521 |
| EcoRI | GAATTC | 1 cut(s) | 714 |
| EcoRV | GATATC | 1 cut(s) | 132 |
| EcoT14I | CCWWGG | 1 cut(s) | 915 |
| EcoT38I | GRGCYC | 1 cut(s) | 524 |
| ErhI | CCWWGG | 1 cut(s) | 915 |
| Esp3I | CGTCTC | 1 cut(s) | 521 |
| FaeI | CATG | 5 cut(s) | 22, 142, 381, 388, 727 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 156, 188, 622, 654 |
| FatI | CATG | 5 cut(s) | 18, 138, 377, 384, 723 |
| FblI | GTMKAC | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 1 cut(s) | 678 |
| FokI | GGATG | 1 cut(s) | 144 |
| FriOI | GRGCYC | 1 cut(s) | 524 |
| Fsp4HI | GCNGC | 1 cut(s) | 678 |
| FspBI | CTAG | 3 cut(s) | 429, 711, 720 |
| GluI | GCNGC | 1 cut(s) | 678 |
| GsuI | CTGGAG | 2 cut(s) | 106, 819 |
| HaeIII | GGCC | 3 cut(s) | 195, 324, 522 |
| HapII | CCGG | 1 cut(s) | 102 |
| HgaI | GACGC | 1 cut(s) | 538 |
| Hin1II | CATG | 5 cut(s) | 22, 142, 381, 388, 727 |
| HincII | GTYRAC | 1 cut(s) | 769 |
| HindII | GTYRAC | 1 cut(s) | 769 |
| HindIII | AAGCTT | 1 cut(s) | 878 |
| HinfI | GANTC | 1 cut(s) | 115 |
| HpaII | CCGG | 1 cut(s) | 102 |
| HphI | GGTGA | 3 cut(s) | 91, 193, 766 |
| Hpy166II | GTNNAC | 3 cut(s) | 155, 202, 769 |
| Hpy188I | TCNGA | 5 cut(s) | 66, 91, 495, 815, 862 |
| Hpy188III | TCNNGA | 6 cut(s) | 112, 161, 301, 360, 788, 798 |
| Hpy8I | GTNNAC | 3 cut(s) | 155, 202, 769 |
| HpyAV | CCTTC | 3 cut(s) | 461, 663, 867 |
| HpyCH4IV | ACGT | 2 cut(s) | 151, 652 |
| HpyCH4V | TGCA | 3 cut(s) | 337, 368, 563 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 321, 569, 644 |
| HpyF3I | CTNAG | 5 cut(s) | 234, 239, 255, 525, 836 |
| HpySE526I | ACGT | 2 cut(s) | 151, 652 |
| Hsp92II | CATG | 5 cut(s) | 22, 142, 381, 388, 727 |
| Kzo9I | GATC | 3 cut(s) | 220, 756, 862 |
| LguI | GCTCTTC | 1 cut(s) | 299 |
| LmnI | GCTCC | 1 cut(s) | 856 |
| Lsp1109I | GCAGC | 1 cut(s) | 689 |
| LweI | GCATC | 2 cut(s) | 4, 445 |
| MaeI | CTAG | 3 cut(s) | 429, 711, 720 |
| MaeII | ACGT | 2 cut(s) | 151, 652 |
| MaeIII | GTNAC | 3 cut(s) | 181, 424, 478 |
| MalI | GATC | 3 cut(s) | 222, 758, 864 |
| MboI | GATC | 3 cut(s) | 220, 756, 862 |
| MboII | GAAGA | 5 cut(s) | 176, 301, 316, 702, 898 |
| MfeI | CAATTG | 1 cut(s) | 870 |
| MflI | RGATCY | 1 cut(s) | 220 |
| MhlI | GDGCHC | 1 cut(s) | 524 |
| MluCI | AATT | 5 cut(s) | 263, 535, 555, 714, 870 |
| MluI | ACGCGT | 1 cut(s) | 530 |
| MlyI | GAGTC | 1 cut(s) | 109 |
| MmeI | TCCRAC | 1 cut(s) | 248 |
| MroXI | GAANNNNTTC | 1 cut(s) | 308 |
| MseI | TTAA | 7 cut(s) | 78, 278, 371, 447, 507, 629, 876 |
| MspCI | CTTAAG | 2 cut(s) | 446, 628 |
| MspI | CCGG | 1 cut(s) | 102 |
| MunI | CAATTG | 1 cut(s) | 870 |
| MvnI | CGCG | 1 cut(s) | 532 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 321, 569, 644 |
| NdeII | GATC | 3 cut(s) | 220, 756, 862 |
| NlaIII | CATG | 5 cut(s) | 22, 142, 381, 388, 727 |
| NlaIV | GGNNCC | 1 cut(s) | 522 |
| NmuCI | GTSAC | 2 cut(s) | 181, 424 |
| NspI | RCATGY | 2 cut(s) | 381, 727 |
| PciI | ACATGT | 1 cut(s) | 377 |
| PciSI | GCTCTTC | 1 cut(s) | 299 |
| PdmI | GAANNNNTTC | 1 cut(s) | 308 |
| PinAI | ACCGGT | 1 cut(s) | 101 |
| PkrI | GCNGC | 1 cut(s) | 679 |
| PleI | GAGTC | 1 cut(s) | 109 |
| PpsI | GAGTC | 1 cut(s) | 109 |
| PscI | ACATGT | 1 cut(s) | 377 |
| PspN4I | GGNNCC | 1 cut(s) | 522 |
| PspOMI | GGGCCC | 1 cut(s) | 520 |
| PspPI | GGNCC | 2 cut(s) | 520, 521 |
| PsuI | RGATCY | 1 cut(s) | 220 |
| RsaI | GTAC | 1 cut(s) | 274 |
| RsaNI | GTAC | 1 cut(s) | 273 |
| SapI | GCTCTTC | 1 cut(s) | 299 |
| SaqAI | TTAA | 7 cut(s) | 78, 278, 371, 447, 507, 629, 876 |
| SatI | GCNGC | 1 cut(s) | 678 |
| Sau3AI | GATC | 3 cut(s) | 220, 756, 862 |
| Sau96I | GGNCC | 2 cut(s) | 520, 521 |
| ScaI | AGTACT | 1 cut(s) | 274 |
| SchI | GAGTC | 1 cut(s) | 109 |
| SduI | GDGCHC | 1 cut(s) | 524 |
| SfaNI | GCATC | 2 cut(s) | 4, 445 |
| SmlI | CTYRAG | 2 cut(s) | 446, 628 |
| SmoI | CTYRAG | 2 cut(s) | 446, 628 |
| Sse9I | AATT | 5 cut(s) | 263, 535, 555, 714, 870 |
| SspI | AATATT | 2 cut(s) | 295, 504 |
| SspMI | CTAG | 3 cut(s) | 429, 711, 720 |
| StyI | CCWWGG | 1 cut(s) | 915 |
| TaiI | ACGT | 2 cut(s) | 154, 655 |
| TaqI | TCGA | 3 cut(s) | 460, 729, 759 |
| TasI | AATT | 5 cut(s) | 263, 535, 555, 714, 870 |
| TatI | WGTACW | 1 cut(s) | 272 |
| Tru1I | TTAA | 7 cut(s) | 78, 278, 371, 447, 507, 629, 876 |
| Tru9I | TTAA | 7 cut(s) | 78, 278, 371, 447, 507, 629, 876 |
| TseFI | GTSAC | 2 cut(s) | 181, 424 |
| TseI | GCWGC | 1 cut(s) | 677 |
| Tsp45I | GTSAC | 2 cut(s) | 181, 424 |
| TspDTI | ATGAA | 6 cut(s) | 35, 302, 513, 657, 678, 858 |
| TspGWI | ACGGA | 1 cut(s) | 567 |
| Vha464I | CTTAAG | 2 cut(s) | 446, 628 |
| XapI | RAATTY | 2 cut(s) | 263, 714 |
| XceI | RCATGY | 2 cut(s) | 381, 727 |
| XmiI | GTMKAC | 1 cut(s) | 201 |
| XmnI | GAANNNNTTC | 1 cut(s) | 308 |
| XspI | CTAG | 3 cut(s) | 429, 711, 720 |
| ZrmI | AGTACT | 1 cut(s) | 274 |