Transposase family tnp2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 527 - 657 | 1.6e-16 | Plant transposase (Ptta/En/Spm family) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 709 |
| AccB1I | GGYRCC | 3 cut(s) | 1342, 1528, 2206 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 115 |
| AccI | GTMKAC | 2 cut(s) | 18, 641 |
| AccII | CGCG | 1 cut(s) | 1254 |
| AccIII | TCCGGA | 1 cut(s) | 1894 |
| AciI | CCGC | 5 cut(s) | 334, 350, 716, 1010, 1254 |
| AclI | AACGTT | 1 cut(s) | 742 |
| AclWI | GGATC | 4 cut(s) | 689, 905, 1049, 2245 |
| AcoI | YGGCCR | 1 cut(s) | 1352 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AcyI | GRCGYC | 1 cut(s) | 1441 |
| AdeI | CACNNNGTG | 1 cut(s) | 41 |
| AfaI | GTAC | 4 cut(s) | 652, 755, 1431, 1687 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 115, 604, 1024, 1082, 1471, 1538, 1539, 1951 |
| AflIII | ACRYGT | 1 cut(s) | 2059 |
| AgsI | TTSAA | 7 cut(s) | 242, 290, 604, 851, 1513, 1559, 1774 |
| AjnI | CCWGG | 2 cut(s) | 472, 1137 |
| AleI | CACNNNNGTG | 3 cut(s) | 1012, 1070, 1348 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1953, 1985 |
| Alw21I | GWGCWC | 3 cut(s) | 274, 559, 1372 |
| Alw26I | GTCTC | 3 cut(s) | 402, 441, 2195 |
| Alw44I | GTGCAC | 1 cut(s) | 1368 |
| AlwI | GGATC | 4 cut(s) | 689, 905, 1049, 2245 |
| Aor13HI | TCCGGA | 1 cut(s) | 1894 |
| AoxI | GGCC | 3 cut(s) | 1135, 1352, 2282 |
| ApaLI | GTGCAC | 1 cut(s) | 1368 |
| ApeKI | GCWGC | 2 cut(s) | 1820, 2111 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2290, 2322 |
| AseI | ATTAAT | 1 cut(s) | 672 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2014 |
| AspLEI | GCGC | 2 cut(s) | 710, 928 |
| AspS9I | GGNCC | 2 cut(s) | 722, 2283 |
| AsuHPI | GGTGA | 4 cut(s) | 53, 380, 692, 1036 |
| AsuNHI | GCTAGC | 1 cut(s) | 1123 |
| AvaII | GGWCC | 1 cut(s) | 722 |
| AxyI | CCTNAGG | 1 cut(s) | 354 |
| BaeGI | GKGCMC | 2 cut(s) | 1372, 1533 |
| BalI | TGGCCA | 1 cut(s) | 1354 |
| BanI | GGYRCC | 3 cut(s) | 1342, 1528, 2206 |
| BanII | GRGCYC | 1 cut(s) | 559 |
| BauI | CACGAG | 1 cut(s) | 273 |
| BbsI | GAAGAC | 1 cut(s) | 1563 |
| Bbv12I | GWGCWC | 3 cut(s) | 274, 559, 1372 |
| BbvI | GCAGC | 2 cut(s) | 1807, 2098 |
| BccI | CCATC | 3 cut(s) | 1127, 1400, 2062 |
| BceAI | ACGGC | 2 cut(s) | 756, 2220 |
| BciT130I | CCWGG | 2 cut(s) | 474, 1139 |
| BciVI | GTATCC | 1 cut(s) | 1618 |
| BclI | TGATCA | 3 cut(s) | 151, 340, 1585 |
| BcoDI | GTCTC | 3 cut(s) | 402, 441, 2195 |
| BfaI | CTAG | 3 cut(s) | 938, 1124, 2019 |
| BfuI | GTATCC | 1 cut(s) | 1618 |
| BglII | AGATCT | 1 cut(s) | 256 |
| BisI | GCNGC | 2 cut(s) | 1821, 2112 |
| BlsI | GCNGC | 2 cut(s) | 1822, 2113 |
| Bme1390I | CCNGG | 2 cut(s) | 474, 1139 |
| Bme18I | GGWCC | 1 cut(s) | 722 |
| BmgT120I | GGNCC | 2 cut(s) | 722, 2283 |
| BmiI | GGNNCC | 4 cut(s) | 1344, 1530, 2208, 2220 |
| BmrFI | CCNGG | 2 cut(s) | 474, 1139 |
| BmrI | ACTGGG | 1 cut(s) | 868 |
| BmsI | GCATC | 6 cut(s) | 124, 205, 235, 1687, 1832, 2170 |
| BmtI | GCTAGC | 1 cut(s) | 1127 |
| BmuI | ACTGGG | 1 cut(s) | 868 |
| BpiI | GAAGAC | 1 cut(s) | 1563 |
| BpmI | CTGGAG | 1 cut(s) | 159 |
| BpuEI | CTTGAG | 1 cut(s) | 1167 |
| BsaBI | GATNNNNATC | 3 cut(s) | 909, 1584, 2277 |
| BsaHI | GRCGYC | 1 cut(s) | 1441 |
| BsaJI | CCNNGG | 7 cut(s) | 26, 473, 884, 1355, 1387, 1465, 2025 |
| BsaWI | WCCGGW | 1 cut(s) | 1894 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 261, 291, 623, 653, 1953, 1983 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 115, 604, 1024, 1082, 1471, 1538, 1539, 1951 |
| Bse118I | RCCGGY | 2 cut(s) | 1024, 1082 |
| Bse1I | ACTGG | 2 cut(s) | 863, 1248 |
| Bse21I | CCTNAGG | 1 cut(s) | 354 |
| Bse3DI | GCAATG | 1 cut(s) | 2040 |
| Bse8I | GATNNNNATC | 3 cut(s) | 909, 1584, 2277 |
| BseAI | TCCGGA | 1 cut(s) | 1894 |
| BseBI | CCWGG | 2 cut(s) | 474, 1139 |
| BseDI | CCNNGG | 7 cut(s) | 26, 473, 884, 1355, 1387, 1465, 2025 |
| BseGI | GGATG | 2 cut(s) | 76, 83 |
| BseJI | GATNNNNATC | 3 cut(s) | 909, 1584, 2277 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 115, 604, 1024, 1082, 1471, 1538, 1539, 1951 |
| BseMI | GCAATG | 1 cut(s) | 2040 |
| BseMII | CTCAG | 5 cut(s) | 345, 1005, 1065, 1643, 2165 |
| BseNI | ACTGG | 2 cut(s) | 863, 1248 |
| BseRI | GAGGAG | 3 cut(s) | 371, 557, 1882 |
| BseSI | GKGCMC | 2 cut(s) | 1372, 1533 |
| BseXI | GCAGC | 2 cut(s) | 1807, 2098 |
| Bsh1236I | CGCG | 1 cut(s) | 1254 |
| BshFI | GGCC | 3 cut(s) | 1137, 1354, 2284 |
| BshNI | GGYRCC | 3 cut(s) | 1342, 1528, 2206 |
| BsiHKAI | GWGCWC | 3 cut(s) | 274, 559, 1372 |
| BsiSI | CCGG | 3 cut(s) | 1025, 1083, 1895 |
| BslFI | GGGAC | 4 cut(s) | 513, 1084, 1555, 1968 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 115, 604, 1024, 1082, 1471, 1538, 1539, 1951 |
| BsmAI | GTCTC | 3 cut(s) | 402, 441, 2195 |
| BsmBI | CGTCTC | 1 cut(s) | 2195 |
| BsmFI | GGGAC | 4 cut(s) | 513, 1084, 1555, 1968 |
| BsnI | GGCC | 3 cut(s) | 1137, 1354, 2284 |
| Bsp1286I | GDGCHC | 4 cut(s) | 274, 559, 1372, 1533 |
| Bsp13I | TCCGGA | 1 cut(s) | 1894 |
| Bsp1407I | TGTACA | 1 cut(s) | 650 |
| Bsp143I | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| BspACI | CCGC | 5 cut(s) | 334, 350, 716, 1010, 1254 |
| BspANI | GGCC | 3 cut(s) | 1137, 1354, 2284 |
| BspCNI | CTCAG | 5 cut(s) | 346, 1004, 1064, 1642, 2166 |
| BspEI | TCCGGA | 1 cut(s) | 1894 |
| BspFNI | CGCG | 1 cut(s) | 1254 |
| BspHI | TCATGA | 1 cut(s) | 148 |
| BspLI | GGNNCC | 4 cut(s) | 1344, 1530, 2208, 2220 |
| BspOI | GCTAGC | 1 cut(s) | 1127 |
| BspPI | GGATC | 4 cut(s) | 689, 905, 1049, 2245 |
| BspT107I | GGYRCC | 3 cut(s) | 1342, 1528, 2206 |
| BsrDI | GCAATG | 1 cut(s) | 2040 |
| BsrFI | RCCGGY | 2 cut(s) | 1024, 1082 |
| BsrGI | TGTACA | 1 cut(s) | 650 |
| BsrI | ACTGG | 2 cut(s) | 863, 1248 |
| BssAI | RCCGGY | 2 cut(s) | 1024, 1082 |
| BssECI | CCNNGG | 7 cut(s) | 26, 473, 884, 1355, 1387, 1465, 2025 |
| BssMI | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| BssNI | GRCGYC | 1 cut(s) | 1441 |
| BssSI | CACGAG | 1 cut(s) | 273 |
| BssT1I | CCWWGG | 5 cut(s) | 26, 884, 1355, 1387, 1465 |
| Bst2BI | CACGAG | 1 cut(s) | 273 |
| Bst2UI | CCWGG | 2 cut(s) | 474, 1139 |
| Bst4CI | ACNGT | 9 cut(s) | 396, 435, 581, 921, 1069, 1175, 1685, 2026, 2302 |
| Bst6I | CTCTTC | 3 cut(s) | 60, 629, 2118 |
| BstACI | GRCGYC | 1 cut(s) | 1441 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 100, 923 |
| BstAUI | TGTACA | 1 cut(s) | 650 |
| BstC8I | GCNNGC | 3 cut(s) | 555, 1125, 1664 |
| BstDEI | CTNAG | 7 cut(s) | 354, 991, 1051, 1612, 1629, 1635, 2174 |
| BstDSI | CCRYGG | 1 cut(s) | 2025 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1469 |
| BstF5I | GGATG | 2 cut(s) | 76, 83 |
| BstFNI | CGCG | 1 cut(s) | 1254 |
| BstHHI | GCGC | 2 cut(s) | 710, 928 |
| BstKTI | GATC | 9 cut(s) | 154, 259, 343, 697, 913, 1044, 1057, 1588, 2253 |
| BstMAI | GTCTC | 3 cut(s) | 402, 441, 2195 |
| BstMBI | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 100, 923, 1088, 2039, 2290 |
| BstNI | CCWGG | 2 cut(s) | 474, 1139 |
| BstNSI | RCATGY | 2 cut(s) | 569, 614 |
| BstSCI | CCNGG | 2 cut(s) | 472, 1137 |
| BstSLI | GKGCMC | 2 cut(s) | 1372, 1533 |
| BstUI | CGCG | 1 cut(s) | 1254 |
| BstV1I | GCAGC | 2 cut(s) | 1807, 2098 |
| BstV2I | GAAGAC | 1 cut(s) | 1563 |
| BstX2I | RGATCY | 2 cut(s) | 256, 1054 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1388 |
| BstYI | RGATCY | 2 cut(s) | 256, 1054 |
| Bsu36I | CCTNAGG | 1 cut(s) | 354 |
| BsuI | GTATCC | 1 cut(s) | 1618 |
| BsuRI | GGCC | 3 cut(s) | 1137, 1354, 2284 |
| BtgI | CCRYGG | 1 cut(s) | 2025 |
| BtsCI | GGATG | 2 cut(s) | 76, 83 |
| BtsI | GCAGTG | 3 cut(s) | 957, 1305, 1842 |
| BtsIMutI | CAGTG | 4 cut(s) | 957, 1180, 1305, 1842 |
| Cac8I | GCNNGC | 3 cut(s) | 555, 1125, 1664 |
| CciI | TCATGA | 1 cut(s) | 148 |
| CfoI | GCGC | 2 cut(s) | 710, 928 |
| Cfr10I | RCCGGY | 2 cut(s) | 1024, 1082 |
| Cfr13I | GGNCC | 2 cut(s) | 722, 2283 |
| CseI | GACGC | 3 cut(s) | 1147, 1430, 1826 |
| Csp6I | GTAC | 4 cut(s) | 651, 754, 1430, 1686 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1051, 1086 |
| CviQI | GTAC | 4 cut(s) | 651, 754, 1430, 1686 |
| DdeI | CTNAG | 7 cut(s) | 354, 991, 1051, 1612, 1629, 1635, 2174 |
| DpnI | GATC | 9 cut(s) | 153, 258, 342, 696, 912, 1043, 1056, 1587, 2252 |
| DpnII | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| DraIII | CACNNNGTG | 1 cut(s) | 41 |
| EaeI | YGGCCR | 1 cut(s) | 1352 |
| Eam1104I | CTCTTC | 3 cut(s) | 60, 629, 2118 |
| EarI | CTCTTC | 3 cut(s) | 60, 629, 2118 |
| EciI | GGCGGA | 1 cut(s) | 731 |
| Ecl136II | GAGCTC | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 5 cut(s) | 26, 884, 1355, 1387, 1465 |
| Eco24I | GRGCYC | 1 cut(s) | 559 |
| Eco32I | GATATC | 3 cut(s) | 988, 1912, 2266 |
| Eco47I | GGWCC | 1 cut(s) | 722 |
| Eco53kI | GAGCTC | 1 cut(s) | 557 |
| Eco81I | CCTNAGG | 1 cut(s) | 354 |
| EcoICRI | GAGCTC | 1 cut(s) | 557 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1469 |
| EcoRII | CCWGG | 2 cut(s) | 472, 1137 |
| EcoRV | GATATC | 3 cut(s) | 988, 1912, 2266 |
| EcoT14I | CCWWGG | 5 cut(s) | 26, 884, 1355, 1387, 1465 |
| EcoT22I | ATGCAT | 2 cut(s) | 139, 1680 |
| EcoT38I | GRGCYC | 1 cut(s) | 559 |
| ErhI | CCWWGG | 5 cut(s) | 26, 884, 1355, 1387, 1465 |
| Esp3I | CGTCTC | 1 cut(s) | 2195 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1493, 1525, 1999, 2031, 2031, 2063 |
| FaqI | GGGAC | 4 cut(s) | 513, 1084, 1555, 1968 |
| FauNDI | CATATG | 1 cut(s) | 156 |
| FbaI | TGATCA | 3 cut(s) | 151, 340, 1585 |
| FblI | GTMKAC | 2 cut(s) | 18, 641 |
| Fnu4HI | GCNGC | 2 cut(s) | 1821, 2112 |
| FokI | GGATG | 2 cut(s) | 63, 70 |
| FriOI | GRGCYC | 1 cut(s) | 559 |
| Fsp4HI | GCNGC | 2 cut(s) | 1821, 2112 |
| FspBI | CTAG | 3 cut(s) | 938, 1124, 2019 |
| FspI | TGCGCA | 1 cut(s) | 709 |
| GlaI | GCGC | 2 cut(s) | 709, 927 |
| GluI | GCNGC | 2 cut(s) | 1821, 2112 |
| GsuI | CTGGAG | 1 cut(s) | 159 |
| HaeIII | GGCC | 3 cut(s) | 1137, 1354, 2284 |
| HapII | CCGG | 3 cut(s) | 1025, 1083, 1895 |
| HgaI | GACGC | 3 cut(s) | 1147, 1430, 1826 |
| HhaI | GCGC | 2 cut(s) | 710, 928 |
| Hin1I | GRCGYC | 1 cut(s) | 1441 |
| Hin6I | GCGC | 2 cut(s) | 708, 926 |
| HinP1I | GCGC | 2 cut(s) | 708, 926 |
| HincII | GTYRAC | 4 cut(s) | 534, 642, 1779, 1816 |
| HindII | GTYRAC | 4 cut(s) | 534, 642, 1779, 1816 |
| HindIII | AAGCTT | 2 cut(s) | 284, 1596 |
| HinfI | GANTC | 6 cut(s) | 377, 387, 996, 1049, 1142, 2163 |
| HpaI | GTTAAC | 1 cut(s) | 534 |
| HpaII | CCGG | 3 cut(s) | 1025, 1083, 1895 |
| HphI | GGTGA | 4 cut(s) | 53, 380, 692, 1036 |
| Hpy166II | GTNNAC | 7 cut(s) | 19, 44, 534, 642, 1370, 1779, 1816 |
| Hpy188III | TCNNGA | 7 cut(s) | 149, 176, 584, 698, 993, 1184, 1895 |
| Hpy8I | GTNNAC | 7 cut(s) | 19, 44, 534, 642, 1370, 1779, 1816 |
| Hpy99I | CGWCG | 1 cut(s) | 646 |
| HpyAV | CCTTC | 6 cut(s) | 177, 598, 671, 713, 868, 2228 |
| HpyCH4III | ACNGT | 9 cut(s) | 396, 435, 581, 921, 1069, 1175, 1685, 2026, 2302 |
| HpyCH4IV | ACGT | 6 cut(s) | 328, 644, 742, 1428, 1939, 2059 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 100, 923, 1088, 2039, 2290 |
| HpyF3I | CTNAG | 7 cut(s) | 354, 991, 1051, 1612, 1629, 1635, 2174 |
| HpySE526I | ACGT | 6 cut(s) | 328, 644, 742, 1428, 1939, 2059 |
| Hsp92I | GRCGYC | 1 cut(s) | 1441 |
| HspAI | GCGC | 2 cut(s) | 708, 926 |
| Kpn2I | TCCGGA | 1 cut(s) | 1894 |
| Ksp22I | TGATCA | 3 cut(s) | 151, 340, 1585 |
| KspAI | GTTAAC | 1 cut(s) | 534 |
| Kzo9I | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| LmnI | GCTCC | 4 cut(s) | 188, 269, 607, 2218 |
| Lsp1109I | GCAGC | 2 cut(s) | 1807, 2098 |
| LweI | GCATC | 6 cut(s) | 124, 205, 235, 1687, 1832, 2170 |
| MaeI | CTAG | 3 cut(s) | 938, 1124, 2019 |
| MaeII | ACGT | 6 cut(s) | 328, 644, 742, 1428, 1939, 2059 |
| MaeIII | GTNAC | 7 cut(s) | 234, 490, 743, 967, 1442, 1603, 1940 |
| MalI | GATC | 9 cut(s) | 153, 258, 342, 696, 912, 1043, 1056, 1587, 2252 |
| MboI | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| MfeI | CAATTG | 2 cut(s) | 789, 1422 |
| MflI | RGATCY | 2 cut(s) | 256, 1054 |
| MhlI | GDGCHC | 4 cut(s) | 274, 559, 1372, 1533 |
| MlsI | TGGCCA | 1 cut(s) | 1354 |
| MluCI | AATT | 9 cut(s) | 47, 202, 290, 588, 789, 1422, 1517, 2130, 2196 |
| MluNI | TGGCCA | 1 cut(s) | 1354 |
| MlyI | GAGTC | 2 cut(s) | 1043, 2157 |
| MmeI | TCCRAC | 3 cut(s) | 166, 1743, 1911 |
| Mox20I | TGGCCA | 1 cut(s) | 1354 |
| Mph1103I | ATGCAT | 2 cut(s) | 139, 1680 |
| MroI | TCCGGA | 1 cut(s) | 1894 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2014 |
| MscI | TGGCCA | 1 cut(s) | 1354 |
| MseI | TTAA | 5 cut(s) | 533, 672, 1323, 2001, 2078 |
| MslI | CAYNNNNRTG | 7 cut(s) | 564, 1012, 1070, 1348, 1449, 1614, 1977 |
| Msp20I | TGGCCA | 1 cut(s) | 1354 |
| MspA1I | CMGCKG | 1 cut(s) | 1012 |
| MspI | CCGG | 3 cut(s) | 1025, 1083, 1895 |
| MspR9I | CCNGG | 2 cut(s) | 474, 1139 |
| MunI | CAATTG | 2 cut(s) | 789, 1422 |
| MvaI | CCWGG | 2 cut(s) | 474, 1139 |
| MvnI | CGCG | 1 cut(s) | 1254 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 100, 923, 1088, 2039, 2290 |
| NdeI | CATATG | 1 cut(s) | 156 |
| NdeII | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| NheI | GCTAGC | 1 cut(s) | 1123 |
| NlaIV | GGNNCC | 4 cut(s) | 1344, 1530, 2208, 2220 |
| NmuCI | GTSAC | 2 cut(s) | 967, 1442 |
| NsbI | TGCGCA | 1 cut(s) | 709 |
| NsiI | ATGCAT | 2 cut(s) | 139, 1680 |
| NspI | RCATGY | 2 cut(s) | 569, 614 |
| OliI | CACNNNNGTG | 3 cut(s) | 1012, 1070, 1348 |
| PagI | TCATGA | 1 cut(s) | 148 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2014 |
| PfeI | GAWTC | 4 cut(s) | 377, 387, 996, 1142 |
| PflFI | GACNNNGTC | 1 cut(s) | 1157 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 115 |
| PkrI | GCNGC | 2 cut(s) | 1822, 2113 |
| PleI | GAGTC | 2 cut(s) | 1043, 2157 |
| PpsI | GAGTC | 2 cut(s) | 1043, 2157 |
| PshBI | ATTAAT | 1 cut(s) | 672 |
| Psp124BI | GAGCTC | 1 cut(s) | 559 |
| Psp1406I | AACGTT | 1 cut(s) | 742 |
| Psp6I | CCWGG | 2 cut(s) | 472, 1137 |
| PspGI | CCWGG | 2 cut(s) | 472, 1137 |
| PspN4I | GGNNCC | 4 cut(s) | 1344, 1530, 2208, 2220 |
| PspPI | GGNCC | 2 cut(s) | 722, 2283 |
| PsuI | RGATCY | 2 cut(s) | 256, 1054 |
| PsyI | GACNNNGTC | 1 cut(s) | 1157 |
| RsaI | GTAC | 4 cut(s) | 652, 755, 1431, 1687 |
| RsaNI | GTAC | 4 cut(s) | 651, 754, 1430, 1686 |
| RseI | CAYNNNNRTG | 7 cut(s) | 564, 1012, 1070, 1348, 1449, 1614, 1977 |
| SacI | GAGCTC | 1 cut(s) | 559 |
| SalI | GTCGAC | 1 cut(s) | 640 |
| SaqAI | TTAA | 5 cut(s) | 533, 672, 1323, 2001, 2078 |
| SatI | GCNGC | 2 cut(s) | 1821, 2112 |
| Sau3AI | GATC | 9 cut(s) | 151, 256, 340, 694, 910, 1041, 1054, 1585, 2250 |
| Sau96I | GGNCC | 2 cut(s) | 722, 2283 |
| SchI | GAGTC | 2 cut(s) | 1043, 2157 |
| ScrFI | CCNGG | 2 cut(s) | 474, 1139 |
| SduI | GDGCHC | 4 cut(s) | 274, 559, 1372, 1533 |
| SfaNI | GCATC | 6 cut(s) | 124, 205, 235, 1687, 1832, 2170 |
| SinI | GGWCC | 1 cut(s) | 722 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 564, 1012, 1070, 1348, 1449, 1614, 1977 |
| SmlI | CTYRAG | 1 cut(s) | 1182 |
| SmoI | CTYRAG | 1 cut(s) | 1182 |
| Sse9I | AATT | 9 cut(s) | 47, 202, 290, 588, 789, 1422, 1517, 2130, 2196 |
| SsiI | CCGC | 5 cut(s) | 334, 350, 716, 1010, 1254 |
| SspI | AATATT | 2 cut(s) | 691, 1993 |
| SspMI | CTAG | 3 cut(s) | 938, 1124, 2019 |
| SstI | GAGCTC | 1 cut(s) | 559 |
| StyD4I | CCNGG | 2 cut(s) | 472, 1137 |
| StyI | CCWWGG | 5 cut(s) | 26, 884, 1355, 1387, 1465 |
| TaaI | ACNGT | 9 cut(s) | 396, 435, 581, 921, 1069, 1175, 1685, 2026, 2302 |
| TaiI | ACGT | 6 cut(s) | 331, 647, 745, 1431, 1942, 2062 |
| TaqI | TCGA | 2 cut(s) | 322, 641 |
| TasI | AATT | 9 cut(s) | 47, 202, 290, 588, 789, 1422, 1517, 2130, 2196 |
| TatI | WGTACW | 2 cut(s) | 650, 1685 |
| TfiI | GAWTC | 4 cut(s) | 377, 387, 996, 1142 |
| Tru1I | TTAA | 5 cut(s) | 533, 672, 1323, 2001, 2078 |
| Tru9I | TTAA | 5 cut(s) | 533, 672, 1323, 2001, 2078 |
| TscAI | CASTG | 4 cut(s) | 957, 1180, 1305, 1842 |
| TseFI | GTSAC | 2 cut(s) | 967, 1442 |
| TseI | GCWGC | 2 cut(s) | 1820, 2111 |
| Tsp45I | GTSAC | 2 cut(s) | 967, 1442 |
| TspGWI | ACGGA | 1 cut(s) | 998 |
| TspRI | CASTG | 4 cut(s) | 957, 1180, 1305, 1842 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1157 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 115 |
| VneI | GTGCAC | 1 cut(s) | 1368 |
| VpaK11BI | GGWCC | 1 cut(s) | 722 |
| VspI | ATTAAT | 1 cut(s) | 672 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1469 |
| XapI | RAATTY | 1 cut(s) | 290 |
| XceI | RCATGY | 2 cut(s) | 569, 614 |
| XmiI | GTMKAC | 2 cut(s) | 18, 641 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2014 |
| XspI | CTAG | 3 cut(s) | 938, 1124, 2019 |
| Zsp2I | ATGCAT | 2 cut(s) | 139, 1680 |