Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000040

Physical Location & Seq

Genomic Coordinates Forward (+)

2193813 .. 2196618

Gene Structure 2806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGCAACTCAATGGTACCGAGCCTCTGAACTTTGTGGGTCATTTTTCTCAAAATTGGAATTTTAAGCTTGAGCAAAGGGAGCGCTTAAATGGTAGGGAACTCACTATAGACTTATTGAATCATGAATTGTTTTGTGAGCAATTTGGACCAGAGACATATAATGCAGTTCGGGGATATGGACTGGGAGTAGAGTGGGTTGATGTTCTTGGAATACAAACTGCAAAGCCAGCAGTTTCTTACGATGTAGCATCACTTCAATCTGAACTTGAAGCCTCACTTGTTGAGATCACGAGGTTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Kinesin Transpos_assoc Transposase_21

Protein Analysis

101

Amino Acids

11.47

Weight (kDa)

4.63

Isoelectric Point (pI)

20.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00150 FvH4_2g13531 FvH4_2g21543 FvH4_3g32800 FvH4_3g32802 FvH4_4g00091 FvH4_4g00092 FvH4_5g22070 FvH4_5g31391 FvH4_6g11351 FvH4_6g23430 FvH4_6g23672 FvH4_6g52753
malus_domestica	MD03G1101500.v1.1 MD08G1234800.v1.1
pyrus_communis	pycom07g24860 pycom09g07860 pycom10g09330 pycom10g15360 pycom11g01600 pycom11g13460 pycom13g15580
rosa_chinensis	RchiOBHm_Chr1g0332021 RchiOBHm_Chr2g0095801 RchiOBHm_Chr2g0111771 RchiOBHm_Chr2g0127541 RchiOBHm_Chr2g0136581 RchiOBHm_Chr2g0136591 RchiOBHm_Chr2g0143311 RchiOBHm_Chr2g0145131 RchiOBHm_Chr2g0151391 RchiOBHm_Chr3g0468771 RchiOBHm_Chr3g0473281 RchiOBHm_Chr3g0481961 RchiOBHm_Chr4g0393741 RchiOBHm_Chr4g0397391 RchiOBHm_Chr4g0435991 RchiOBHm_Chr5g0015951 RchiOBHm_Chr5g0016651 RchiOBHm_Chr5g0039191 RchiOBHm_Chr5g0039211 RchiOBHm_Chr6g0254441 RchiOBHm_Chr6g0260911 RchiOBHm_Chr6g0274501 RchiOBHm_Chr6g0274511 RchiOBHm_Chr7g0184951 RchiOBHm_Chr7g0201701 RchiOBHm_Chr7g0201721 RchiOBHm_Chr7g0201731 RchiOBHm_Chr7g0234921 RchiOBHm_Chr7g0237841
rosa_laevigata	RLG00000001204 RLG00000001230 RLG00000001341 RLG00000001513 RLG00000001971 RLG00000002177 RLG00000002360 RLG00000003112 RLG00000003130 RLG00000003854 RLG00000008209 RLG00000008322 RLG00000008412 RLG00000008524 RLG00000009491 RLG00000009908 RLG00000011823 RLG00000013252 RLG00000013782 RLG00000013944 RLG00000014480 RLG00000019084 RLG00000019544 RLG00000019751 RLG00000020093 RLG00000020094 RLG00000020551 RLG00000020838 RLG00000020982 RLG00000021059 RLG00000022067 RLG00000022604 RLG00000022632 RLG00000022849 RLG00000023962 RLG00000025767 RLG00000026838 RLG00000027291 RLG00000028131 RLG00000028210 RLG00000028834 RLG00000030169 RLG00000031271 RLG00000032327 RLG00000033996 RLG00000034546 RLG00000034654 RLG00000034810 RLG00000035087 RLG00000036782
rosa_multiflora	Rmu_co8330487.1_g000001 Rmu_co8359977.1_g000001 Rmu_co8445341.1_g000001 Rmu_sc0000141.1_g000003 Rmu_sc0000353.1_g000018 Rmu_sc0000740.1_g000017 Rmu_sc0000744.1_g000138 Rmu_sc0000813.1_g000014 Rmu_sc0000908.1_g000003 Rmu_sc0000999.1_g000014 Rmu_sc0001103.1_g000001 Rmu_sc0001248.1_g000013 Rmu_sc0001282.1_g000021 Rmu_sc0001293.1_g000018 Rmu_sc0001608.1_g000015 Rmu_sc0001616.1_g000060 Rmu_sc0001851.1_g000013 Rmu_sc0001990.1_g000003 Rmu_sc0002138.1_g000002 Rmu_sc0002200.1_g000021 Rmu_sc0002230.1_g000029 Rmu_sc0002230.1_g000030 Rmu_sc0002702.1_g000017 Rmu_sc0002806.1_g000010 Rmu_sc0002809.1_g000023 Rmu_sc0002869.1_g000005 Rmu_sc0003156.1_g000027 Rmu_sc0003368.1_g000018 Rmu_sc0003642.1_g000007 Rmu_sc0003653.1_g000004 Rmu_sc0003791.1_g000008 Rmu_sc0003804.1_g000013 Rmu_sc0004015.1_g000022 Rmu_sc0004230.1_g000017 Rmu_sc0004368.1_g000011 Rmu_sc0004529.1_g000011 Rmu_sc0004540.1_g000011 Rmu_sc0005008.1_g000014 Rmu_sc0005171.1_g000001 Rmu_sc0005212.1_g000013 Rmu_sc0005947.1_g000003 Rmu_sc0006317.1_g000026 Rmu_sc0006578.1_g000005 Rmu_sc0006993.1_g000001 Rmu_sc0007442.1_g000002 Rmu_sc0007442.1_g000004 Rmu_sc0007876.1_g000004 Rmu_sc0007876.1_g000005 Rmu_sc0009624.1_g000004 Rmu_sc0009742.1_g000005 Rmu_sc0010306.1_g000007 Rmu_sc0011745.1_g000008 Rmu_sc0011800.1_g000003 Rmu_sc0012369.1_g000003 Rmu_sc0012787.1_g000003 Rmu_sc0012989.1_g000001 Rmu_sc0013416.1_g000003 Rmu_sc0021155.1_g000001 Rmu_sc0022372.1_g000001 Rmu_sc0023106.1_g000001 Rmu_sc0023684.1_g000003 Rmu_sc0023684.1_g000004 Rmu_sc0026897.1_g000001 Rmu_sc0027278.1_g000001 Rmu_sc0028533.1_g000001 Rmu_sc0028533.1_g000003 Rmu_sc0038440.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031730 Rroxscaffold_1G00033690 Rroxscaffold_1G00073100 Rroxscaffold_2G00079640 Rroxscaffold_2G00089760 Rroxscaffold_2G00091520 Rroxscaffold_2G00112420 Rroxscaffold_2G00115720 Rroxscaffold_2G00116170 Rroxscaffold_2G00116180 Rroxscaffold_2G00152590 Rroxscaffold_2G00155940 Rroxscaffold_3G00220010 Rroxscaffold_3G00234940 Rroxscaffold_3G00235250 Rroxscaffold_3G00237510 Rroxscaffold_3G00250950 Rroxscaffold_3G00250960 Rroxscaffold_3G00262030 Rroxscaffold_4G00299560 Rroxscaffold_4G00306000 Rroxscaffold_4G00311350 Rroxscaffold_4G00318530 Rroxscaffold_4G00329140 Rroxscaffold_5G00342020 Rroxscaffold_5G00350770 Rroxscaffold_5G00354620 Rroxscaffold_5G00354630 Rroxscaffold_5G00361180 Rroxscaffold_5G00377270 Rroxscaffold_6G00397870 Rroxscaffold_6G00397960 Rroxscaffold_6G00407290 Rroxscaffold_6G00408690 Rroxscaffold_6G00421900 Rroxscaffold_6G00421910 Rroxscaffold_7G00181630 Rroxscaffold_7G00182330 Rroxscaffold_7G00182340 Rroxscaffold_7G00212590 Rroxscaffold_7G00214060 Rroxscaffold_7G00214070 Rroxscaffold_7G00215940
rosa_rugosa	Rorug01G0052800 Rorug01G0052800 Rorug01G0075200 Rorug01G0090500 Rorug01G0091500 Rorug01G0106000 Rorug01G0309300 Rorug01G0309400.1 Rorug02G0092000 Rorug02G0128200 Rorug02G0152800 Rorug02G0366100 Rorug02G0401500 Rorug02G0465600 Rorug02G0474400 Rorug03G0322500 Rorug04G0044000 Rorug04G0044100 Rorug04G0064800.1 Rorug04G0077400 Rorug04G0094800 Rorug04G0094800 Rorug04G0111400 Rorug04G0137800 Rorug04G0137900 Rorug04G0138000 Rorug04G0138000 Rorug04G0446200 Rorug05G0090600 Rorug05G0239900 Rorug05G0284400 Rorug05G0534400 Rorug05G0561600 Rorug06G0098100 Rorug06G0098100 Rorug06G0134500 Rorug06G0238500 Rorug06G0238600 Rorug07G0228900 Rorug07G0229000 Rorug07G0291600 Rorug07G0291700
rosa_samantha	Rh1AG082200 Rh1AG129200 Rh1AG131500 Rh1AG159900 Rh1AG330800 Rh1AG408400 Rh1BG089600 Rh1CG086000 Rh1CG149200 Rh1CG405600 Rh1DG008200 Rh1DG015800 Rh1DG068000 Rh1DG118400 Rh1DG122500 Rh1DG202400 Rh1DG202500 Rh1DG266300 Rh1DG266400 Rh1DG287400 Rh1DG314700 Rh1DG314800 Rh2AG128400 Rh2AG128500 Rh2AG291000 Rh2AG347900 Rh2AG350700 Rh2AG415100 Rh2AG417200 Rh2AG497700 Rh2AG505000 Rh2AG507600 Rh2BG131300 Rh2BG233900 Rh2BG291700 Rh2BG291800 Rh2BG302700 Rh2BG302800 Rh2BG334700 Rh2BG334900 Rh2BG347000 Rh2BG347800 Rh2BG357100 Rh2BG528200 Rh2BG528300 Rh2BG603700 Rh2CG032300 Rh2CG034300 Rh2CG232600 Rh2CG483700 Rh2DG077400 Rh2DG103100 Rh2DG103200 Rh2DG287000 Rh2DG287200 Rh2DG375000 Rh2DG382700 Rh2DG537400 Rh2DG602900 Rh2DG603000 Rh3AG080800 Rh3AG217300 Rh3AG321800 Rh3BG082700 Rh3BG082800 Rh3BG168600 Rh3BG185900 Rh3BG224400 Rh3BG250500 Rh3BG260700 Rh3BG351300 Rh3BG353600 Rh3BG353700 Rh3CG082900 Rh3CG083000 Rh3CG176200 Rh3CG176300 Rh3CG219400 Rh3CG219500 Rh3CG254600 Rh3CG254700 Rh3CG256000 Rh3CG256100 Rh3CG257400 Rh3CG356200 Rh3CG356300 Rh3DG084300 Rh4AG030500 Rh4BG132300 Rh4BG139800 Rh4BG140000 Rh4CG027200 Rh4CG033100 Rh4CG033200 Rh4CG069600 Rh4CG103300 Rh4CG322600 Rh4DG028500 Rh4DG081000 Rh4DG190200 Rh4DG193500 Rh4DG212900 Rh4DG303900 Rh4DG342900 Rh5AG131000 Rh5AG166800 Rh5AG167000 Rh5AG201600 Rh5AG372200 Rh5AG372300 Rh5AG417900 Rh5BG082500 Rh5BG171200 Rh5BG171300 Rh5BG180300 Rh5BG194400 Rh5BG302800 Rh5BG343300 Rh5BG402700 Rh5BG428500 Rh5CG190700 Rh5CG190800 Rh5CG219100 Rh5CG451900 Rh5DG175200 Rh5DG175400 Rh5DG177000 Rh5DG177100 Rh5DG356000 Rh5DG356100 Rh5DG493500 Rh6AG006700 Rh6AG051700 Rh6AG064100 Rh6AG064200 Rh6AG064500 Rh6AG092800 Rh6AG152000 Rh6AG152100 Rh6AG291900 Rh6AG419000 Rh6AG465900 Rh6AG466000 Rh6BG125000 Rh6BG160600 Rh6BG161800 Rh6BG359100 Rh6BG359200 Rh6CG071400 Rh6CG071500 Rh6CG103500 Rh6CG103600 Rh6CG117200 Rh6CG123700 Rh6CG123800 Rh6CG156600 Rh6CG192500 Rh6CG208600 Rh6CG208700 Rh6CG365200 Rh6DG146200 Rh6DG146800 Rh6DG193200 Rh6DG193300 Rh6DG193400 Rh6DG349200 Rh7AG251100 Rh7AG259300 Rh7AG425100 Rh7BG262700 Rh7BG262900 Rh7BG369500 Rh7CG107400 Rh7CG107500 Rh7CG257400 Rh7CG267300 Rh7DG070500 Rh7DG105000 Rh7DG198500 Rh7DG291300 Rh7DG480600
rosa_wichuraiana	Rw2G027920 Rw3G014750 Rw3G021490 Rw4G001910 Rw6G013120 Rw6G020040 Rw6G022930 Rw6G041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	61
AfaI	GTAC	1 cut(s)	19
AfeI	AGCGCT	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	121, 260, 272
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	61
Asp718I	GGTACC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BauI	CACGAG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	19
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	288
BssSI	CACGAG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 230
BstSFI	CTRYAG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	4 cut(s)	25, 70, 229, 275
CviKI_1	RGCY	4 cut(s)	25, 70, 229, 275
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	149
Eco47III	AGCGCT	1 cut(s)	86
FaeI	CATG	1 cut(s)	128
FaiI	YATR	6 cut(s)	110, 126, 160, 162, 180, 304
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	1 cut(s)	124
GlaI	GCGC	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	88
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	30, 265
Hpy188III	TCNNGA	2 cut(s)	125, 292
Hpy8I	GTNNAC	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	7, 167, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 230
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	165, 170, 243
LweI	GCATC	1 cut(s)	260
MalI	GATC	1 cut(s)	290
MboI	GATC	1 cut(s)	288
MluCI	AATT	4 cut(s)	55, 61, 128, 143
MnlI	CCTC	3 cut(s)	36, 286, 288
MseI	TTAA	2 cut(s)	66, 89
MwoI	GCNNNNNNNGC	2 cut(s)	82, 230
NdeII	GATC	1 cut(s)	288
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	66, 89
Sau3AI	GATC	1 cut(s)	288
Sau96I	GGNCC	1 cut(s)	149
SetI	ASST	2 cut(s)	72, 299
SfaNI	GCATC	1 cut(s)	260
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	55, 61, 128, 143
TasI	AATT	4 cut(s)	55, 61, 128, 143
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	66, 89
Tru9I	TTAA	2 cut(s)	66, 89
TspDTI	ATGAA	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.