Transposase family tnp2
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 421 |
| AccII | CGCG | 2 cut(s) | 165, 186 |
| AciI | CCGC | 5 cut(s) | 186, 545, 697, 818, 828 |
| AclWI | GGATC | 1 cut(s) | 518 |
| AcsI | RAATTY | 4 cut(s) | 76, 98, 155, 454 |
| AcuI | CTGAAG | 1 cut(s) | 404 |
| AfaI | GTAC | 1 cut(s) | 575 |
| AfeI | AGCGCT | 1 cut(s) | 784 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 385 |
| AflII | CTTAAG | 1 cut(s) | 476 |
| AflIII | ACRYGT | 1 cut(s) | 391 |
| AgsI | TTSAA | 2 cut(s) | 95, 160 |
| AjnI | CCWGG | 3 cut(s) | 167, 253, 843 |
| AluBI | AGCT | 2 cut(s) | 287, 338 |
| AluI | AGCT | 2 cut(s) | 287, 338 |
| Alw21I | GWGCWC | 2 cut(s) | 340, 485 |
| Alw26I | GTCTC | 2 cut(s) | 135, 818 |
| AlwI | GGATC | 1 cut(s) | 518 |
| Aor51HI | AGCGCT | 1 cut(s) | 784 |
| ApeKI | GCWGC | 2 cut(s) | 352, 785 |
| ApoI | RAATTY | 4 cut(s) | 76, 98, 155, 454 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 570, 602 |
| AseI | ATTAAT | 1 cut(s) | 501 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 155 |
| AspLEI | GCGC | 2 cut(s) | 167, 785 |
| AspS9I | GGNCC | 2 cut(s) | 551, 799 |
| AsuHPI | GGTGA | 3 cut(s) | 200, 521, 932 |
| AvaII | GGWCC | 2 cut(s) | 551, 799 |
| BanII | GRGCYC | 1 cut(s) | 340 |
| Bbv12I | GWGCWC | 2 cut(s) | 340, 485 |
| BbvI | GCAGC | 2 cut(s) | 339, 772 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 63, 97 |
| BciT130I | CCWGG | 3 cut(s) | 169, 255, 845 |
| BcoDI | GTCTC | 2 cut(s) | 135, 818 |
| BfaI | CTAG | 3 cut(s) | 210, 449, 821 |
| BfoI | RGCGCY | 1 cut(s) | 786 |
| BfrI | CTTAAG | 1 cut(s) | 476 |
| BisI | GCNGC | 2 cut(s) | 353, 786 |
| BlsI | GCNGC | 2 cut(s) | 354, 787 |
| Bme1390I | CCNGG | 3 cut(s) | 169, 255, 845 |
| Bme18I | GGWCC | 2 cut(s) | 551, 799 |
| BmgT120I | GGNCC | 2 cut(s) | 551, 799 |
| BmiI | GGNNCC | 1 cut(s) | 800 |
| BmrFI | CCNGG | 3 cut(s) | 169, 255, 845 |
| BmrI | ACTGGG | 2 cut(s) | 57, 886 |
| BmuI | ACTGGG | 2 cut(s) | 57, 886 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 772, 804 |
| BpmI | CTGGAG | 1 cut(s) | 827 |
| BsaI | GGTCTC | 1 cut(s) | 818 |
| BsaJI | CCNNGG | 1 cut(s) | 844 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 385 |
| Bse1I | ACTGG | 4 cut(s) | 63, 125, 631, 881 |
| BseBI | CCWGG | 3 cut(s) | 169, 255, 845 |
| BseDI | CCNNGG | 1 cut(s) | 844 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 385 |
| BseNI | ACTGG | 4 cut(s) | 63, 125, 631, 881 |
| BseRI | GAGGAG | 1 cut(s) | 338 |
| BseXI | GCAGC | 2 cut(s) | 339, 772 |
| Bsh1236I | CGCG | 2 cut(s) | 165, 186 |
| BsiHKAI | GWGCWC | 2 cut(s) | 340, 485 |
| BslFI | GGGAC | 2 cut(s) | 294, 812 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 385 |
| BsmAI | GTCTC | 2 cut(s) | 135, 818 |
| BsmBI | CGTCTC | 1 cut(s) | 135 |
| BsmFI | GGGAC | 2 cut(s) | 294, 812 |
| BsmI | GAATGC | 1 cut(s) | 929 |
| Bso31I | GGTCTC | 1 cut(s) | 818 |
| Bsp1286I | GDGCHC | 2 cut(s) | 340, 485 |
| Bsp143I | GATC | 2 cut(s) | 84, 523 |
| BspACI | CCGC | 5 cut(s) | 186, 545, 697, 818, 828 |
| BspFNI | CGCG | 2 cut(s) | 165, 186 |
| BspHI | TCATGA | 1 cut(s) | 588 |
| BspLI | GGNNCC | 1 cut(s) | 800 |
| BspPI | GGATC | 1 cut(s) | 518 |
| BspTI | CTTAAG | 1 cut(s) | 476 |
| BspTNI | GGTCTC | 1 cut(s) | 818 |
| BsrI | ACTGG | 4 cut(s) | 63, 125, 631, 881 |
| BssECI | CCNNGG | 1 cut(s) | 844 |
| BssMI | GATC | 2 cut(s) | 84, 523 |
| Bst2UI | CCWGG | 3 cut(s) | 169, 255, 845 |
| Bst4CI | ACNGT | 4 cut(s) | 267, 362, 573, 688 |
| Bst6I | CTCTTC | 2 cut(s) | 7, 906 |
| BstAFI | CTTAAG | 1 cut(s) | 476 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 2 cut(s) | 184, 889 |
| BstFNI | CGCG | 2 cut(s) | 165, 186 |
| BstH2I | RGCGCY | 1 cut(s) | 786 |
| BstHHI | GCGC | 2 cut(s) | 167, 785 |
| BstKTI | GATC | 2 cut(s) | 87, 526 |
| BstMAI | GTCTC | 2 cut(s) | 135, 818 |
| BstMBI | GATC | 2 cut(s) | 84, 523 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 183, 352 |
| BstNI | CCWGG | 3 cut(s) | 169, 255, 845 |
| BstNSI | RCATGY | 2 cut(s) | 350, 395 |
| BstSCI | CCNGG | 3 cut(s) | 167, 253, 843 |
| BstUI | CGCG | 2 cut(s) | 165, 186 |
| BstV1I | GCAGC | 2 cut(s) | 339, 772 |
| BtsIMutI | CAGTG | 2 cut(s) | 70, 263 |
| Cac8I | GCNNGC | 2 cut(s) | 184, 889 |
| CciI | TCATGA | 1 cut(s) | 588 |
| CfoI | GCGC | 2 cut(s) | 167, 785 |
| Cfr13I | GGNCC | 2 cut(s) | 551, 799 |
| Csp6I | GTAC | 1 cut(s) | 574 |
| CviAII | CATG | 4 cut(s) | 347, 392, 589, 608 |
| CviJI | RGCY | 4 cut(s) | 287, 338, 566, 835 |
| CviKI_1 | RGCY | 4 cut(s) | 287, 338, 566, 835 |
| CviQI | GTAC | 1 cut(s) | 574 |
| DpnI | GATC | 2 cut(s) | 86, 525 |
| DpnII | GATC | 2 cut(s) | 84, 523 |
| Eam1104I | CTCTTC | 2 cut(s) | 7, 906 |
| EarI | CTCTTC | 2 cut(s) | 7, 906 |
| Ecl136II | GAGCTC | 1 cut(s) | 338 |
| Eco24I | GRGCYC | 1 cut(s) | 340 |
| Eco31I | GGTCTC | 1 cut(s) | 818 |
| Eco32I | GATATC | 1 cut(s) | 745 |
| Eco47I | GGWCC | 2 cut(s) | 551, 799 |
| Eco47III | AGCGCT | 1 cut(s) | 784 |
| Eco53kI | GAGCTC | 1 cut(s) | 338 |
| Eco57I | CTGAAG | 1 cut(s) | 404 |
| EcoICRI | GAGCTC | 1 cut(s) | 338 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRII | CCWGG | 3 cut(s) | 167, 253, 843 |
| EcoRV | GATATC | 1 cut(s) | 745 |
| EcoT38I | GRGCYC | 1 cut(s) | 340 |
| Esp3I | CGTCTC | 1 cut(s) | 135 |
| FaeI | CATG | 4 cut(s) | 350, 395, 592, 611 |
| FaqI | GGGAC | 2 cut(s) | 294, 812 |
| FatI | CATG | 4 cut(s) | 346, 391, 588, 607 |
| FblI | GTMKAC | 1 cut(s) | 421 |
| Fnu4HI | GCNGC | 2 cut(s) | 353, 786 |
| FriOI | GRGCYC | 1 cut(s) | 340 |
| Fsp4HI | GCNGC | 2 cut(s) | 353, 786 |
| FspBI | CTAG | 3 cut(s) | 210, 449, 821 |
| GlaI | GCGC | 2 cut(s) | 166, 784 |
| GluI | GCNGC | 2 cut(s) | 353, 786 |
| GsuI | CTGGAG | 1 cut(s) | 827 |
| HaeII | RGCGCY | 1 cut(s) | 786 |
| HhaI | GCGC | 2 cut(s) | 167, 785 |
| Hin1II | CATG | 4 cut(s) | 350, 395, 592, 611 |
| Hin6I | GCGC | 2 cut(s) | 165, 783 |
| HinP1I | GCGC | 2 cut(s) | 165, 783 |
| HincII | GTYRAC | 2 cut(s) | 315, 422 |
| HindII | GTYRAC | 2 cut(s) | 315, 422 |
| HinfI | GANTC | 4 cut(s) | 121, 197, 437, 914 |
| HpaI | GTTAAC | 1 cut(s) | 315 |
| HphI | GGTGA | 3 cut(s) | 200, 521, 932 |
| Hpy166II | GTNNAC | 3 cut(s) | 299, 315, 422 |
| Hpy188I | TCNGA | 4 cut(s) | 39, 48, 251, 442 |
| Hpy188III | TCNNGA | 4 cut(s) | 201, 365, 527, 589 |
| Hpy8I | GTNNAC | 3 cut(s) | 299, 315, 422 |
| Hpy99I | CGWCG | 1 cut(s) | 426 |
| HpyAV | CCTTC | 4 cut(s) | 145, 379, 542, 889 |
| HpyCH4III | ACNGT | 4 cut(s) | 267, 362, 573, 688 |
| HpyCH4IV | ACGT | 1 cut(s) | 424 |
| HpyCH4V | TGCA | 5 cut(s) | 9, 74, 433, 815, 887 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 183, 352 |
| HpySE526I | ACGT | 1 cut(s) | 424 |
| Hsp92II | CATG | 4 cut(s) | 350, 395, 592, 611 |
| HspAI | GCGC | 2 cut(s) | 165, 783 |
| KspAI | GTTAAC | 1 cut(s) | 315 |
| Kzo9I | GATC | 2 cut(s) | 84, 523 |
| Lsp1109I | GCAGC | 2 cut(s) | 339, 772 |
| MaeI | CTAG | 3 cut(s) | 210, 449, 821 |
| MaeII | ACGT | 1 cut(s) | 424 |
| MaeIII | GTNAC | 1 cut(s) | 271 |
| MalI | GATC | 2 cut(s) | 86, 525 |
| MboI | GATC | 2 cut(s) | 84, 523 |
| MboII | GAAGA | 6 cut(s) | 24, 72, 107, 923, 955, 958 |
| MhlI | GDGCHC | 2 cut(s) | 340, 485 |
| MluCI | AATT | 8 cut(s) | 76, 98, 155, 369, 454, 673, 752, 803 |
| MlyI | GAGTC | 2 cut(s) | 431, 923 |
| MnlI | CCTC | 6 cut(s) | 18, 316, 410, 765, 789, 953 |
| MroXI | GAANNNNTTC | 1 cut(s) | 155 |
| MseI | TTAA | 3 cut(s) | 314, 477, 501 |
| MslI | CAYNNNNRTG | 1 cut(s) | 345 |
| MspCI | CTTAAG | 1 cut(s) | 476 |
| MspR9I | CCNGG | 3 cut(s) | 169, 255, 845 |
| Mva1269I | GAATGC | 1 cut(s) | 929 |
| MvaI | CCWGG | 3 cut(s) | 169, 255, 845 |
| MvnI | CGCG | 2 cut(s) | 165, 186 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 183, 352 |
| NdeII | GATC | 2 cut(s) | 84, 523 |
| NlaIII | CATG | 4 cut(s) | 350, 395, 592, 611 |
| NlaIV | GGNNCC | 1 cut(s) | 800 |
| NspI | RCATGY | 2 cut(s) | 350, 395 |
| PagI | TCATGA | 1 cut(s) | 588 |
| PciI | ACATGT | 1 cut(s) | 391 |
| PctI | GAATGC | 1 cut(s) | 929 |
| PdmI | GAANNNNTTC | 1 cut(s) | 155 |
| PfeI | GAWTC | 2 cut(s) | 121, 197 |
| PkrI | GCNGC | 2 cut(s) | 354, 787 |
| PleI | GAGTC | 2 cut(s) | 431, 922 |
| PpsI | GAGTC | 2 cut(s) | 431, 922 |
| PscI | ACATGT | 1 cut(s) | 391 |
| PshBI | ATTAAT | 1 cut(s) | 501 |
| Psp124BI | GAGCTC | 1 cut(s) | 340 |
| Psp6I | CCWGG | 3 cut(s) | 167, 253, 843 |
| PspGI | CCWGG | 3 cut(s) | 167, 253, 843 |
| PspN4I | GGNNCC | 1 cut(s) | 800 |
| PspPI | GGNCC | 2 cut(s) | 551, 799 |
| RsaI | GTAC | 1 cut(s) | 575 |
| RsaNI | GTAC | 1 cut(s) | 574 |
| RseI | CAYNNNNRTG | 1 cut(s) | 345 |
| SacI | GAGCTC | 1 cut(s) | 340 |
| SalI | GTCGAC | 1 cut(s) | 420 |
| SaqAI | TTAA | 3 cut(s) | 314, 477, 501 |
| SatI | GCNGC | 2 cut(s) | 353, 786 |
| Sau3AI | GATC | 2 cut(s) | 84, 523 |
| Sau96I | GGNCC | 2 cut(s) | 551, 799 |
| SchI | GAGTC | 2 cut(s) | 431, 923 |
| ScrFI | CCNGG | 3 cut(s) | 169, 255, 845 |
| SduI | GDGCHC | 2 cut(s) | 340, 485 |
| SetI | ASST | 9 cut(s) | 256, 289, 340, 384, 421, 427, 511, 900, 964 |
| SinI | GGWCC | 2 cut(s) | 551, 799 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 345 |
| SmlI | CTYRAG | 1 cut(s) | 476 |
| SmoI | CTYRAG | 1 cut(s) | 476 |
| Sse9I | AATT | 8 cut(s) | 76, 98, 155, 369, 454, 673, 752, 803 |
| SsiI | CCGC | 5 cut(s) | 186, 545, 697, 818, 828 |
| SspMI | CTAG | 3 cut(s) | 210, 449, 821 |
| SstI | GAGCTC | 1 cut(s) | 340 |
| StyD4I | CCNGG | 3 cut(s) | 167, 253, 843 |
| TaaI | ACNGT | 4 cut(s) | 267, 362, 573, 688 |
| TaiI | ACGT | 1 cut(s) | 427 |
| TaqI | TCGA | 3 cut(s) | 83, 421, 860 |
| TasI | AATT | 8 cut(s) | 76, 98, 155, 369, 454, 673, 752, 803 |
| TfiI | GAWTC | 2 cut(s) | 121, 197 |
| Tru1I | TTAA | 3 cut(s) | 314, 477, 501 |
| Tru9I | TTAA | 3 cut(s) | 314, 477, 501 |
| TscAI | CASTG | 2 cut(s) | 70, 270 |
| TseI | GCWGC | 2 cut(s) | 352, 785 |
| TspDTI | ATGAA | 3 cut(s) | 576, 596, 605 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| TspRI | CASTG | 2 cut(s) | 70, 270 |
| Vha464I | CTTAAG | 1 cut(s) | 476 |
| VpaK11BI | GGWCC | 2 cut(s) | 551, 799 |
| VspI | ATTAAT | 1 cut(s) | 501 |
| XapI | RAATTY | 4 cut(s) | 76, 98, 155, 454 |
| XceI | RCATGY | 2 cut(s) | 350, 395 |
| XmiI | GTMKAC | 1 cut(s) | 421 |
| XmnI | GAANNNNTTC | 1 cut(s) | 155 |
| XspI | CTAG | 3 cut(s) | 210, 449, 821 |