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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 284 |
| AcoI | YGGCCR | 1 cut(s) | 249 |
| AcsI | RAATTY | 1 cut(s) | 263 |
| AcvI | CACGTG | 1 cut(s) | 61 |
| AfaI | GTAC | 2 cut(s) | 114, 147 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 208 |
| AflIII | ACRYGT | 1 cut(s) | 58 |
| AgsI | TTSAA | 3 cut(s) | 19, 182, 268 |
| AhlI | ACTAGT | 1 cut(s) | 115 |
| AluBI | AGCT | 2 cut(s) | 220, 356 |
| AluI | AGCT | 2 cut(s) | 220, 356 |
| Alw26I | GTCTC | 1 cut(s) | 49 |
| AoxI | GGCC | 2 cut(s) | 171, 249 |
| ApeKI | GCWGC | 4 cut(s) | 350, 353, 463, 466 |
| ApoI | RAATTY | 1 cut(s) | 263 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 102, 186 |
| AsuC2I | CCSGG | 1 cut(s) | 108 |
| AsuHPI | GGTGA | 1 cut(s) | 298 |
| BalI | TGGCCA | 1 cut(s) | 251 |
| BbrPI | CACGTG | 1 cut(s) | 61 |
| BbvI | GCAGC | 4 cut(s) | 337, 365, 475, 478 |
| BccI | CCATC | 1 cut(s) | 304 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 72, 106 |
| BcnI | CCSGG | 1 cut(s) | 108 |
| BcoDI | GTCTC | 1 cut(s) | 49 |
| BcuI | ACTAGT | 1 cut(s) | 115 |
| BfaI | CTAG | 1 cut(s) | 116 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BisI | GCNGC | 4 cut(s) | 351, 354, 464, 467 |
| BlsI | GCNGC | 4 cut(s) | 352, 355, 465, 468 |
| Bme1390I | CCNGG | 1 cut(s) | 108 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BmrFI | CCNGG | 1 cut(s) | 108 |
| BmsI | GCATC | 2 cut(s) | 46, 289 |
| Bpu10I | CCTNAGC | 1 cut(s) | 221 |
| BpuMI | CCSGG | 1 cut(s) | 108 |
| BsaAI | YACGTR | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 208 |
| BseGI | GGATG | 1 cut(s) | 304 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 208 |
| BseXI | GCAGC | 4 cut(s) | 337, 365, 475, 478 |
| BsgI | GTGCAG | 1 cut(s) | 140 |
| BshFI | GGCC | 2 cut(s) | 173, 251 |
| BsiSI | CCGG | 1 cut(s) | 108 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 208 |
| BsmAI | GTCTC | 1 cut(s) | 49 |
| BsnI | GGCC | 2 cut(s) | 173, 251 |
| BspACI | CCGC | 1 cut(s) | 284 |
| BspANI | GGCC | 2 cut(s) | 173, 251 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BspMAI | CTGCAG | 1 cut(s) | 355 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 447 |
| BstBAI | YACGTR | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 1 cut(s) | 348 |
| BstDEI | CTNAG | 1 cut(s) | 221 |
| BstF5I | GGATG | 1 cut(s) | 304 |
| BstMAI | GTCTC | 1 cut(s) | 49 |
| BstSCI | CCNGG | 1 cut(s) | 106 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstV1I | GCAGC | 4 cut(s) | 337, 365, 475, 478 |
| BsuRI | GGCC | 2 cut(s) | 173, 251 |
| BtsCI | GGATG | 1 cut(s) | 304 |
| BtsIMutI | CAGTG | 1 cut(s) | 452 |
| Cac8I | GCNNGC | 1 cut(s) | 348 |
| Csp6I | GTAC | 2 cut(s) | 113, 146 |
| CviAII | CATG | 1 cut(s) | 167 |
| CviJI | RGCY | 6 cut(s) | 173, 201, 220, 251, 356, 396 |
| CviKI_1 | RGCY | 6 cut(s) | 173, 201, 220, 251, 356, 396 |
| CviQI | GTAC | 2 cut(s) | 113, 146 |
| DdeI | CTNAG | 1 cut(s) | 221 |
| EaeI | YGGCCR | 1 cut(s) | 249 |
| Eco72I | CACGTG | 1 cut(s) | 61 |
| EcoT22I | ATGCAT | 1 cut(s) | 39 |
| FaeI | CATG | 1 cut(s) | 170 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 204, 236 |
| FatI | CATG | 1 cut(s) | 166 |
| FauNDI | CATATG | 2 cut(s) | 328, 412 |
| Fnu4HI | GCNGC | 4 cut(s) | 351, 354, 464, 467 |
| FokI | GGATG | 1 cut(s) | 311 |
| Fsp4HI | GCNGC | 4 cut(s) | 351, 354, 464, 467 |
| FspBI | CTAG | 1 cut(s) | 116 |
| GluI | GCNGC | 4 cut(s) | 351, 354, 464, 467 |
| HaeIII | GGCC | 2 cut(s) | 173, 251 |
| HapII | CCGG | 1 cut(s) | 108 |
| Hin1II | CATG | 1 cut(s) | 170 |
| HindIII | AAGCTT | 1 cut(s) | 218 |
| HinfI | GANTC | 3 cut(s) | 89, 187, 332 |
| HpaII | CCGG | 1 cut(s) | 108 |
| HphI | GGTGA | 1 cut(s) | 298 |
| Hpy166II | GTNNAC | 2 cut(s) | 113, 436 |
| Hpy188I | TCNGA | 2 cut(s) | 94, 192 |
| Hpy8I | GTNNAC | 2 cut(s) | 113, 436 |
| HpyAV | CCTTC | 2 cut(s) | 187, 361 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 447 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 4 cut(s) | 37, 121, 353, 463 |
| HpyF3I | CTNAG | 1 cut(s) | 221 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| Hsp92II | CATG | 1 cut(s) | 170 |
| LpnPI | CCDG | 2 cut(s) | 121, 281 |
| Lsp1109I | GCAGC | 4 cut(s) | 337, 365, 475, 478 |
| LweI | GCATC | 2 cut(s) | 46, 289 |
| MaeI | CTAG | 1 cut(s) | 116 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MaeIII | GTNAC | 2 cut(s) | 315, 472 |
| MboII | GAAGA | 3 cut(s) | 224, 399, 467 |
| MlsI | TGGCCA | 1 cut(s) | 251 |
| MluCI | AATT | 3 cut(s) | 263, 458, 481 |
| MluNI | TGGCCA | 1 cut(s) | 251 |
| MlyI | GAGTC | 2 cut(s) | 98, 341 |
| MmeI | TCCRAC | 2 cut(s) | 72, 406 |
| MnlI | CCTC | 6 cut(s) | 58, 67, 122, 136, 163, 220 |
| Mox20I | TGGCCA | 1 cut(s) | 251 |
| Mph1103I | ATGCAT | 1 cut(s) | 39 |
| MroXI | GAANNNNTTC | 2 cut(s) | 102, 186 |
| MscI | TGGCCA | 1 cut(s) | 251 |
| MseI | TTAA | 3 cut(s) | 8, 156, 359 |
| Msp20I | TGGCCA | 1 cut(s) | 251 |
| MspI | CCGG | 1 cut(s) | 108 |
| MspR9I | CCNGG | 1 cut(s) | 108 |
| NciI | CCSGG | 1 cut(s) | 108 |
| NdeI | CATATG | 2 cut(s) | 328, 412 |
| NlaIII | CATG | 1 cut(s) | 170 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NmeAIII | GCCGAG | 1 cut(s) | 199 |
| NsiI | ATGCAT | 1 cut(s) | 39 |
| PdmI | GAANNNNTTC | 2 cut(s) | 102, 186 |
| PfeI | GAWTC | 1 cut(s) | 187 |
| PkrI | GCNGC | 4 cut(s) | 352, 355, 465, 468 |
| PleI | GAGTC | 2 cut(s) | 97, 340 |
| PmaCI | CACGTG | 1 cut(s) | 61 |
| PmlI | CACGTG | 1 cut(s) | 61 |
| PpsI | GAGTC | 2 cut(s) | 97, 340 |
| Ppu21I | YACGTR | 1 cut(s) | 61 |
| PspCI | CACGTG | 1 cut(s) | 61 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PstI | CTGCAG | 1 cut(s) | 355 |
| RsaI | GTAC | 2 cut(s) | 114, 147 |
| RsaNI | GTAC | 2 cut(s) | 113, 146 |
| SaqAI | TTAA | 3 cut(s) | 8, 156, 359 |
| SatI | GCNGC | 4 cut(s) | 351, 354, 464, 467 |
| SchI | GAGTC | 2 cut(s) | 98, 341 |
| ScrFI | CCNGG | 1 cut(s) | 108 |
| SetI | ASST | 5 cut(s) | 63, 133, 147, 222, 358 |
| SfaNI | GCATC | 2 cut(s) | 46, 289 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SpeI | ACTAGT | 1 cut(s) | 115 |
| Sse9I | AATT | 3 cut(s) | 263, 458, 481 |
| SsiI | CCGC | 1 cut(s) | 284 |
| SspMI | CTAG | 1 cut(s) | 116 |
| StyD4I | CCNGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 2 cut(s) | 247, 447 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TasI | AATT | 3 cut(s) | 263, 458, 481 |
| TatI | WGTACW | 1 cut(s) | 112 |
| TfiI | GAWTC | 1 cut(s) | 187 |
| Tru1I | TTAA | 3 cut(s) | 8, 156, 359 |
| Tru9I | TTAA | 3 cut(s) | 8, 156, 359 |
| TscAI | CASTG | 1 cut(s) | 452 |
| TseI | GCWGC | 4 cut(s) | 350, 353, 463, 466 |
| TspDTI | ATGAA | 4 cut(s) | 41, 248, 399, 468 |
| TspRI | CASTG | 1 cut(s) | 452 |
| XapI | RAATTY | 1 cut(s) | 263 |
| XmnI | GAANNNNTTC | 2 cut(s) | 102, 186 |
| XspI | CTAG | 1 cut(s) | 116 |
| Zsp2I | ATGCAT | 1 cut(s) | 39 |