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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 380, 500 |
| AcoI | YGGCCR | 3 cut(s) | 270, 274, 431 |
| AcsI | RAATTY | 1 cut(s) | 69 |
| AcuI | CTGAAG | 1 cut(s) | 444 |
| AcvI | CACGTG | 1 cut(s) | 482 |
| AfaI | GTAC | 1 cut(s) | 266 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 182, 361 |
| AflIII | ACRYGT | 1 cut(s) | 481 |
| AgsI | TTSAA | 2 cut(s) | 214, 455 |
| AluBI | AGCT | 2 cut(s) | 105, 606 |
| AluI | AGCT | 2 cut(s) | 105, 606 |
| Alw26I | GTCTC | 1 cut(s) | 455 |
| AoxI | GGCC | 6 cut(s) | 185, 228, 270, 274, 431, 475 |
| ApeKI | GCWGC | 1 cut(s) | 200 |
| ApoI | RAATTY | 1 cut(s) | 69 |
| AspS9I | GGNCC | 3 cut(s) | 185, 229, 476 |
| AsuHPI | GGTGA | 3 cut(s) | 53, 65, 587 |
| BaeGI | GKGCMC | 1 cut(s) | 397 |
| BalI | TGGCCA | 1 cut(s) | 433 |
| BbrPI | CACGTG | 1 cut(s) | 482 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| BbvI | GCAGC | 1 cut(s) | 187 |
| BciVI | GTATCC | 1 cut(s) | 338 |
| BcoDI | GTCTC | 1 cut(s) | 455 |
| BfaI | CTAG | 3 cut(s) | 371, 603, 607 |
| BfuI | GTATCC | 1 cut(s) | 338 |
| BisI | GCNGC | 2 cut(s) | 201, 501 |
| BlsI | GCNGC | 2 cut(s) | 202, 502 |
| BmgT120I | GGNCC | 3 cut(s) | 185, 229, 476 |
| BmsI | GCATC | 3 cut(s) | 106, 117, 367 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 1 cut(s) | 326 |
| BsaAI | YACGTR | 1 cut(s) | 482 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 182, 361 |
| Bse118I | RCCGGY | 1 cut(s) | 272 |
| Bse3DI | GCAATG | 1 cut(s) | 498 |
| BseGI | GGATG | 2 cut(s) | 10, 132 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 182, 361 |
| BseMI | GCAATG | 1 cut(s) | 498 |
| BseRI | GAGGAG | 3 cut(s) | 165, 239, 323 |
| BseSI | GKGCMC | 1 cut(s) | 397 |
| BseXI | GCAGC | 1 cut(s) | 187 |
| BshFI | GGCC | 6 cut(s) | 187, 230, 272, 276, 433, 477 |
| BsiSI | CCGG | 1 cut(s) | 273 |
| BslFI | GGGAC | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 182, 361 |
| BsmAI | GTCTC | 1 cut(s) | 455 |
| BsmFI | GGGAC | 1 cut(s) | 44 |
| BsmI | GAATGC | 1 cut(s) | 344 |
| BsnI | GGCC | 6 cut(s) | 187, 230, 272, 276, 433, 477 |
| Bsp1286I | GDGCHC | 1 cut(s) | 397 |
| Bsp1407I | TGTACA | 1 cut(s) | 264 |
| BspACI | CCGC | 2 cut(s) | 380, 500 |
| BspANI | GGCC | 6 cut(s) | 187, 230, 272, 276, 433, 477 |
| BsrDI | GCAATG | 1 cut(s) | 498 |
| BsrFI | RCCGGY | 1 cut(s) | 272 |
| BsrGI | TGTACA | 1 cut(s) | 264 |
| BssAI | RCCGGY | 1 cut(s) | 272 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 168 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 497 |
| BstAUI | TGTACA | 1 cut(s) | 264 |
| BstBAI | YACGTR | 1 cut(s) | 482 |
| BstC8I | GCNNGC | 2 cut(s) | 274, 356 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 180 |
| BstF5I | GGATG | 2 cut(s) | 10, 132 |
| BstMAI | GTCTC | 1 cut(s) | 455 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 474, 497, 509 |
| BstSLI | GKGCMC | 1 cut(s) | 397 |
| BstV1I | GCAGC | 1 cut(s) | 187 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 109 |
| BsuI | GTATCC | 1 cut(s) | 338 |
| BsuRI | GGCC | 6 cut(s) | 187, 230, 272, 276, 433, 477 |
| BtsCI | GGATG | 2 cut(s) | 10, 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| Cac8I | GCNNGC | 2 cut(s) | 274, 356 |
| Cfr10I | RCCGGY | 1 cut(s) | 272 |
| Cfr13I | GGNCC | 3 cut(s) | 185, 229, 476 |
| Csp6I | GTAC | 1 cut(s) | 265 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 243, 278, 279, 314 |
| CviAII | CATG | 5 cut(s) | 38, 131, 268, 404, 562 |
| CviQI | GTAC | 1 cut(s) | 265 |
| EaeI | YGGCCR | 3 cut(s) | 270, 274, 431 |
| Eco57I | CTGAAG | 1 cut(s) | 444 |
| Eco72I | CACGTG | 1 cut(s) | 482 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 180 |
| EcoT22I | ATGCAT | 1 cut(s) | 132 |
| FaeI | CATG | 5 cut(s) | 41, 134, 271, 407, 565 |
| FaqI | GGGAC | 1 cut(s) | 44 |
| FatI | CATG | 5 cut(s) | 37, 130, 267, 403, 561 |
| FauNDI | CATATG | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 2 cut(s) | 201, 501 |
| FokI | GGATG | 2 cut(s) | 17, 139 |
| FseI | GGCCGGCC | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 2 cut(s) | 201, 501 |
| FspBI | CTAG | 3 cut(s) | 371, 603, 607 |
| GluI | GCNGC | 2 cut(s) | 201, 501 |
| HaeIII | GGCC | 6 cut(s) | 187, 230, 272, 276, 433, 477 |
| HapII | CCGG | 1 cut(s) | 273 |
| Hin1II | CATG | 5 cut(s) | 41, 134, 271, 407, 565 |
| HinfI | GANTC | 1 cut(s) | 24 |
| HpaII | CCGG | 1 cut(s) | 273 |
| HphI | GGTGA | 3 cut(s) | 53, 65, 587 |
| Hpy188I | TCNGA | 1 cut(s) | 87 |
| Hpy188III | TCNNGA | 1 cut(s) | 305 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 168 |
| HpyCH4IV | ACGT | 2 cut(s) | 457, 481 |
| HpyCH4V | TGCA | 3 cut(s) | 130, 491, 530 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 474, 497, 509 |
| HpySE526I | ACGT | 2 cut(s) | 457, 481 |
| Hsp92II | CATG | 5 cut(s) | 41, 134, 271, 407, 565 |
| KroI | GCCGGC | 1 cut(s) | 272 |
| KroNI | GCCGGC | 1 cut(s) | 274 |
| LpnPI | CCDG | 8 cut(s) | 13, 115, 162, 286, 304, 368, 435, 540 |
| Lsp1109I | GCAGC | 1 cut(s) | 187 |
| LweI | GCATC | 3 cut(s) | 106, 117, 367 |
| MaeI | CTAG | 3 cut(s) | 371, 603, 607 |
| MaeII | ACGT | 2 cut(s) | 457, 481 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MboII | GAAGA | 2 cut(s) | 162, 202 |
| MhlI | GDGCHC | 1 cut(s) | 397 |
| MlsI | TGGCCA | 1 cut(s) | 433 |
| MluCI | AATT | 5 cut(s) | 69, 239, 257, 514, 556 |
| MluNI | TGGCCA | 1 cut(s) | 433 |
| MnlI | CCTC | 6 cut(s) | 85, 186, 217, 220, 301, 580 |
| Mox20I | TGGCCA | 1 cut(s) | 433 |
| Mph1103I | ATGCAT | 1 cut(s) | 132 |
| MroNI | GCCGGC | 1 cut(s) | 272 |
| MscI | TGGCCA | 1 cut(s) | 433 |
| MslI | CAYNNNNRTG | 1 cut(s) | 402 |
| Msp20I | TGGCCA | 1 cut(s) | 433 |
| MspI | CCGG | 1 cut(s) | 273 |
| Mva1269I | GAATGC | 1 cut(s) | 344 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 474, 497, 509 |
| NaeI | GCCGGC | 1 cut(s) | 274 |
| NdeI | CATATG | 1 cut(s) | 78 |
| NgoMIV | GCCGGC | 1 cut(s) | 272 |
| NlaIII | CATG | 5 cut(s) | 41, 134, 271, 407, 565 |
| NsiI | ATGCAT | 1 cut(s) | 132 |
| PctI | GAATGC | 1 cut(s) | 344 |
| PdiI | GCCGGC | 1 cut(s) | 274 |
| PfeI | GAWTC | 1 cut(s) | 24 |
| PkrI | GCNGC | 2 cut(s) | 202, 502 |
| PmaCI | CACGTG | 1 cut(s) | 482 |
| PmlI | CACGTG | 1 cut(s) | 482 |
| Ppu21I | YACGTR | 1 cut(s) | 482 |
| PspCI | CACGTG | 1 cut(s) | 482 |
| PspPI | GGNCC | 3 cut(s) | 185, 229, 476 |
| RigI | GGCCGGCC | 1 cut(s) | 276 |
| RsaI | GTAC | 1 cut(s) | 266 |
| RsaNI | GTAC | 1 cut(s) | 265 |
| RseI | CAYNNNNRTG | 1 cut(s) | 402 |
| SatI | GCNGC | 2 cut(s) | 201, 501 |
| Sau96I | GGNCC | 3 cut(s) | 185, 229, 476 |
| SduI | GDGCHC | 1 cut(s) | 397 |
| SetI | ASST | 7 cut(s) | 107, 151, 323, 424, 460, 484, 608 |
| SfaNI | GCATC | 3 cut(s) | 106, 117, 367 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 402 |
| SmlI | CTYRAG | 1 cut(s) | 305 |
| SmoI | CTYRAG | 1 cut(s) | 305 |
| Sse9I | AATT | 5 cut(s) | 69, 239, 257, 514, 556 |
| SsiI | CCGC | 2 cut(s) | 380, 500 |
| SspMI | CTAG | 3 cut(s) | 371, 603, 607 |
| TaaI | ACNGT | 2 cut(s) | 49, 168 |
| TaiI | ACGT | 2 cut(s) | 460, 484 |
| TaqI | TCGA | 1 cut(s) | 222 |
| TasI | AATT | 5 cut(s) | 69, 239, 257, 514, 556 |
| TatI | WGTACW | 1 cut(s) | 264 |
| TauI | GCSGC | 1 cut(s) | 503 |
| TfiI | GAWTC | 1 cut(s) | 24 |
| TscAI | CASTG | 1 cut(s) | 54 |
| TseI | GCWGC | 1 cut(s) | 200 |
| TspDTI | ATGAA | 6 cut(s) | 81, 177, 297, 325, 401, 578 |
| TspRI | CASTG | 1 cut(s) | 54 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 180 |
| XapI | RAATTY | 1 cut(s) | 69 |
| XspI | CTAG | 3 cut(s) | 371, 603, 607 |
| Zsp2I | ATGCAT | 1 cut(s) | 132 |