Transposase family tnp2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 126 - 226 | 8.7e-07 | Plant transposase (Ptta/En/Spm family) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 265 |
| AclWI | GGATC | 1 cut(s) | 918 |
| AcsI | RAATTY | 1 cut(s) | 304 |
| AcuI | CTGAAG | 2 cut(s) | 654, 876 |
| AcvI | CACGTG | 1 cut(s) | 489 |
| AcyI | GRCGYC | 1 cut(s) | 266 |
| AfaI | GTAC | 1 cut(s) | 539 |
| AflIII | ACRYGT | 1 cut(s) | 486 |
| AgsI | TTSAA | 9 cut(s) | 204, 461, 592, 599, 688, 719, 735, 940, 965 |
| AjnI | CCWGG | 1 cut(s) | 48 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 57, 89 |
| AluBI | AGCT | 3 cut(s) | 323, 758, 806 |
| AluI | AGCT | 3 cut(s) | 323, 758, 806 |
| AlwI | GGATC | 1 cut(s) | 918 |
| AoxI | GGCC | 1 cut(s) | 46 |
| ApeKI | GCWGC | 2 cut(s) | 323, 785 |
| ApoI | RAATTY | 1 cut(s) | 304 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 958, 990 |
| AspLEI | GCGC | 2 cut(s) | 268, 657 |
| AspS9I | GGNCC | 1 cut(s) | 337 |
| AvaII | GGWCC | 1 cut(s) | 337 |
| BanI | GGYRCC | 1 cut(s) | 265 |
| BbrPI | CACGTG | 1 cut(s) | 489 |
| BbvI | GCAGC | 2 cut(s) | 310, 772 |
| BccI | CCATC | 6 cut(s) | 323, 547, 874, 886, 919, 937 |
| BciT130I | CCWGG | 1 cut(s) | 50 |
| BfaI | CTAG | 1 cut(s) | 759 |
| BfoI | RGCGCY | 1 cut(s) | 269 |
| BglII | AGATCT | 1 cut(s) | 851 |
| BisI | GCNGC | 2 cut(s) | 324, 786 |
| BlsI | GCNGC | 2 cut(s) | 325, 787 |
| Bme1390I | CCNGG | 1 cut(s) | 50 |
| Bme18I | GGWCC | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 1 cut(s) | 337 |
| BmiI | GGNNCC | 3 cut(s) | 267, 338, 480 |
| BmrFI | CCNGG | 1 cut(s) | 50 |
| BmsI | GCATC | 1 cut(s) | 121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 570 |
| BsaAI | YACGTR | 1 cut(s) | 489 |
| BsaHI | GRCGYC | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 1 cut(s) | 543 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 159, 189 |
| Bse1I | ACTGG | 1 cut(s) | 535 |
| Bse3DI | GCAATG | 2 cut(s) | 178, 555 |
| BseBI | CCWGG | 1 cut(s) | 50 |
| BseDI | CCNNGG | 1 cut(s) | 543 |
| BseGI | GGATG | 1 cut(s) | 987 |
| BseMI | GCAATG | 2 cut(s) | 178, 555 |
| BseMII | CTCAG | 1 cut(s) | 584 |
| BseNI | ACTGG | 1 cut(s) | 535 |
| BseRI | GAGGAG | 1 cut(s) | 902 |
| BseXI | GCAGC | 2 cut(s) | 310, 772 |
| BshFI | GGCC | 1 cut(s) | 48 |
| BshNI | GGYRCC | 1 cut(s) | 265 |
| BslFI | GGGAC | 3 cut(s) | 266, 373, 684 |
| BsmFI | GGGAC | 3 cut(s) | 266, 373, 684 |
| BsnI | GGCC | 1 cut(s) | 48 |
| Bsp143I | GATC | 2 cut(s) | 851, 910 |
| BspANI | GGCC | 1 cut(s) | 48 |
| BspCNI | CTCAG | 1 cut(s) | 583 |
| BspHI | TCATGA | 1 cut(s) | 76 |
| BspLI | GGNNCC | 3 cut(s) | 267, 338, 480 |
| BspPI | GGATC | 1 cut(s) | 918 |
| BspT107I | GGYRCC | 1 cut(s) | 265 |
| BsrDI | GCAATG | 2 cut(s) | 178, 555 |
| BsrI | ACTGG | 1 cut(s) | 535 |
| BssECI | CCNNGG | 1 cut(s) | 543 |
| BssMI | GATC | 2 cut(s) | 851, 910 |
| BssNI | GRCGYC | 1 cut(s) | 266 |
| BssT1I | CCWWGG | 1 cut(s) | 543 |
| Bst2UI | CCWGG | 1 cut(s) | 50 |
| Bst4CI | ACNGT | 2 cut(s) | 439, 777 |
| BstACI | GRCGYC | 1 cut(s) | 266 |
| BstBAI | YACGTR | 1 cut(s) | 489 |
| BstC8I | GCNNGC | 1 cut(s) | 756 |
| BstDEI | CTNAG | 2 cut(s) | 516, 570 |
| BstF5I | GGATG | 1 cut(s) | 987 |
| BstH2I | RGCGCY | 1 cut(s) | 269 |
| BstHHI | GCGC | 2 cut(s) | 268, 657 |
| BstKTI | GATC | 2 cut(s) | 854, 913 |
| BstMBI | GATC | 2 cut(s) | 851, 910 |
| BstNI | CCWGG | 1 cut(s) | 50 |
| BstNSI | RCATGY | 1 cut(s) | 569 |
| BstSCI | CCNGG | 1 cut(s) | 48 |
| BstV1I | GCAGC | 2 cut(s) | 310, 772 |
| BstX2I | RGATCY | 1 cut(s) | 851 |
| BstYI | RGATCY | 1 cut(s) | 851 |
| BsuRI | GGCC | 1 cut(s) | 48 |
| BtsCI | GGATG | 1 cut(s) | 987 |
| Cac8I | GCNNGC | 1 cut(s) | 756 |
| CciI | TCATGA | 1 cut(s) | 76 |
| CfoI | GCGC | 2 cut(s) | 268, 657 |
| Cfr13I | GGNCC | 1 cut(s) | 337 |
| Csp6I | GTAC | 1 cut(s) | 538 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 160, 195 |
| CviAII | CATG | 5 cut(s) | 77, 140, 149, 410, 566 |
| CviJI | RGCY | 8 cut(s) | 48, 89, 323, 368, 525, 758, 785, 806 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 89, 323, 368, 525, 758, 785, 806 |
| CviQI | GTAC | 1 cut(s) | 538 |
| DdeI | CTNAG | 2 cut(s) | 516, 570 |
| DinI | GGCGCC | 1 cut(s) | 267 |
| DpnI | GATC | 2 cut(s) | 853, 912 |
| DpnII | GATC | 2 cut(s) | 851, 910 |
| DraI | TTTAAA | 1 cut(s) | 502 |
| Eco130I | CCWWGG | 1 cut(s) | 543 |
| Eco47I | GGWCC | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 2 cut(s) | 654, 876 |
| Eco72I | CACGTG | 1 cut(s) | 489 |
| EcoO109I | RGGNCCY | 1 cut(s) | 337 |
| EcoRII | CCWGG | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 543 |
| EgeI | GGCGCC | 1 cut(s) | 267 |
| EheI | GGCGCC | 1 cut(s) | 267 |
| ErhI | CCWWGG | 1 cut(s) | 543 |
| FaeI | CATG | 5 cut(s) | 80, 143, 152, 413, 569 |
| FaqI | GGGAC | 3 cut(s) | 266, 373, 684 |
| FatI | CATG | 5 cut(s) | 76, 139, 148, 409, 565 |
| Fnu4HI | GCNGC | 2 cut(s) | 324, 786 |
| FokI | GGATG | 1 cut(s) | 994 |
| Fsp4HI | GCNGC | 2 cut(s) | 324, 786 |
| FspBI | CTAG | 1 cut(s) | 759 |
| GlaI | GCGC | 2 cut(s) | 267, 656 |
| GluI | GCNGC | 2 cut(s) | 324, 786 |
| HaeII | RGCGCY | 1 cut(s) | 269 |
| HaeIII | GGCC | 1 cut(s) | 48 |
| HhaI | GCGC | 2 cut(s) | 268, 657 |
| Hin1I | GRCGYC | 1 cut(s) | 266 |
| Hin1II | CATG | 5 cut(s) | 80, 143, 152, 413, 569 |
| Hin6I | GCGC | 2 cut(s) | 266, 655 |
| HinP1I | GCGC | 2 cut(s) | 266, 655 |
| HinfI | GANTC | 5 cut(s) | 200, 243, 508, 684, 846 |
| Hpy166II | GTNNAC | 1 cut(s) | 540 |
| Hpy188I | TCNGA | 4 cut(s) | 435, 851, 856, 915 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 195, 279, 572 |
| Hpy8I | GTNNAC | 1 cut(s) | 540 |
| HpyAV | CCTTC | 3 cut(s) | 146, 469, 923 |
| HpyCH4III | ACNGT | 2 cut(s) | 439, 777 |
| HpyCH4IV | ACGT | 1 cut(s) | 488 |
| HpyCH4V | TGCA | 2 cut(s) | 754, 788 |
| HpyF3I | CTNAG | 2 cut(s) | 516, 570 |
| HpySE526I | ACGT | 1 cut(s) | 488 |
| Hsp92I | GRCGYC | 1 cut(s) | 266 |
| Hsp92II | CATG | 5 cut(s) | 80, 143, 152, 413, 569 |
| HspAI | GCGC | 2 cut(s) | 266, 655 |
| KasI | GGCGCC | 1 cut(s) | 265 |
| Kzo9I | GATC | 2 cut(s) | 851, 910 |
| LmnI | GCTCC | 1 cut(s) | 949 |
| LpnPI | CCDG | 8 cut(s) | 35, 62, 208, 495, 548, 557, 666, 987 |
| Lsp1109I | GCAGC | 2 cut(s) | 310, 772 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeI | CTAG | 1 cut(s) | 759 |
| MaeII | ACGT | 1 cut(s) | 488 |
| MaeIII | GTNAC | 1 cut(s) | 348 |
| MalI | GATC | 2 cut(s) | 853, 912 |
| MboI | GATC | 2 cut(s) | 851, 910 |
| MboII | GAAGA | 3 cut(s) | 236, 632, 952 |
| MflI | RGATCY | 1 cut(s) | 851 |
| MluCI | AATT | 4 cut(s) | 7, 304, 503, 658 |
| Mly113I | GGCGCC | 1 cut(s) | 266 |
| MlyI | GAGTC | 1 cut(s) | 502 |
| MmeI | TCCRAC | 2 cut(s) | 759, 973 |
| MnlI | CCTC | 9 cut(s) | 113, 161, 568, 660, 717, 775, 832, 880, 909 |
| MseI | TTAA | 4 cut(s) | 30, 501, 765, 822 |
| MslI | CAYNNNNRTG | 2 cut(s) | 81, 377 |
| MspR9I | CCNGG | 1 cut(s) | 50 |
| MvaI | CCWGG | 1 cut(s) | 50 |
| NarI | GGCGCC | 1 cut(s) | 266 |
| NdeII | GATC | 2 cut(s) | 851, 910 |
| NlaIII | CATG | 5 cut(s) | 80, 143, 152, 413, 569 |
| NlaIV | GGNNCC | 3 cut(s) | 267, 338, 480 |
| NmeAIII | GCCGAG | 1 cut(s) | 856 |
| NspI | RCATGY | 1 cut(s) | 569 |
| PagI | TCATGA | 1 cut(s) | 76 |
| PfeI | GAWTC | 4 cut(s) | 200, 243, 684, 846 |
| PkrI | GCNGC | 2 cut(s) | 325, 787 |
| PleI | GAGTC | 1 cut(s) | 502 |
| PluTI | GGCGCC | 1 cut(s) | 269 |
| PmaCI | CACGTG | 1 cut(s) | 489 |
| PmlI | CACGTG | 1 cut(s) | 489 |
| PpsI | GAGTC | 1 cut(s) | 502 |
| Ppu21I | YACGTR | 1 cut(s) | 489 |
| PpuMI | RGGWCCY | 1 cut(s) | 337 |
| Psp5II | RGGWCCY | 1 cut(s) | 337 |
| Psp6I | CCWGG | 1 cut(s) | 48 |
| PspCI | CACGTG | 1 cut(s) | 489 |
| PspGI | CCWGG | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 3 cut(s) | 267, 338, 480 |
| PspPI | GGNCC | 1 cut(s) | 337 |
| PspPPI | RGGWCCY | 1 cut(s) | 337 |
| PsuI | RGATCY | 1 cut(s) | 851 |
| RsaI | GTAC | 1 cut(s) | 539 |
| RsaNI | GTAC | 1 cut(s) | 538 |
| RseI | CAYNNNNRTG | 2 cut(s) | 81, 377 |
| SaqAI | TTAA | 4 cut(s) | 30, 501, 765, 822 |
| SatI | GCNGC | 2 cut(s) | 324, 786 |
| Sau3AI | GATC | 2 cut(s) | 851, 910 |
| Sau96I | GGNCC | 1 cut(s) | 337 |
| SchI | GAGTC | 1 cut(s) | 502 |
| ScrFI | CCNGG | 1 cut(s) | 50 |
| SetI | ASST | 9 cut(s) | 124, 325, 484, 491, 740, 760, 808, 822, 828 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| SfoI | GGCGCC | 1 cut(s) | 267 |
| SinI | GGWCC | 1 cut(s) | 337 |
| SmiI | ATTTAAAT | 1 cut(s) | 502 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 81, 377 |
| Sse9I | AATT | 4 cut(s) | 7, 304, 503, 658 |
| SspDI | GGCGCC | 1 cut(s) | 265 |
| SspI | AATATT | 1 cut(s) | 595 |
| SspMI | CTAG | 1 cut(s) | 759 |
| StyD4I | CCNGG | 1 cut(s) | 48 |
| StyI | CCWWGG | 1 cut(s) | 543 |
| SwaI | ATTTAAAT | 1 cut(s) | 502 |
| TaaI | ACNGT | 2 cut(s) | 439, 777 |
| TaiI | ACGT | 1 cut(s) | 491 |
| TaqI | TCGA | 2 cut(s) | 278, 676 |
| TasI | AATT | 4 cut(s) | 7, 304, 503, 658 |
| TatI | WGTACW | 1 cut(s) | 537 |
| TfiI | GAWTC | 4 cut(s) | 200, 243, 684, 846 |
| Tru1I | TTAA | 4 cut(s) | 30, 501, 765, 822 |
| Tru9I | TTAA | 4 cut(s) | 30, 501, 765, 822 |
| TseI | GCWGC | 2 cut(s) | 323, 785 |
| TspDTI | ATGAA | 8 cut(s) | 65, 156, 165, 203, 298, 576, 701, 998 |
| TspGWI | ACGGA | 1 cut(s) | 412 |
| VpaK11BI | GGWCC | 1 cut(s) | 337 |
| XapI | RAATTY | 1 cut(s) | 304 |
| XceI | RCATGY | 1 cut(s) | 569 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 550 |
| XspI | CTAG | 1 cut(s) | 759 |