Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

50780937 .. 50784069

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0359000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCATTGAAGATGACAATAAACAAACCTCCATATTCTTTGGTCTCCACTACGACTGCGAATGTGAGGAAGACTACGCTGCTGAAAATGTACCAAGTAGAGACGAAATTGAAAGCATTCCCAGCACCAAAAAGAAAGACCAAATTGGGTGCATTGGATATTTCTCCAAAAACCTGGACAAAGGGTGAGCTTCTTGGTCGTGGCTCATTCGGCTCTGTCTATCAAGGATCTTGTTCAGATGGATTCATTTTCGCTGCCAAGGAAGTTTCATTGCTTGATCAAGGAAGTCAGGGGAGGAGCTGTGTTTCTCAACTTCAACAGGAGATTGAGTTTCTCAGTTGGCTTGAACACAAAAACATAGTTCAATACTATGGCTCATTCGAGTATGGATCAAATCTTTATATGTGTATGGAGCATGCACCTAATGGATCCATTCGACAACTCTATCAGAGATCGAATCTTTCACTTCCTCGTTATCTTCATGACCATAATGTGGTTCACAGATCTGCAAAGCTTGCAGATTTTGGATTGGCAAAGATAACCACCAAAATGAATGAAATTCAATCTTTGCAGGGGACTGCATTCTGGATGGCCCCTGAGGTTTTTAGTGCAAAAATCAAGAACCAAGGTTATGGACCTCCAGCGGCTATATGGAGCCTTGGTTGCACTGTGTTGGAGATGTTAACAAGGCAGGTTCCCTACCCTGGTTTGGAACCGTTTCAGGCATGTTTTAAGATTGCAATGGGGGAGCTCCCTCACATTCCTCATTTTCTTTGTAAGGAGGTGCGAGATTTCATCCATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

268

Amino Acids

30.18

Weight (kDa)

9.29

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	60 - 238	1.9e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	62 - 152	1.5e-09	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	168 - 267	1.1e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
AccB7I	CCANNNNNTGG	1 cut(s)	493
AciI	CCGC	1 cut(s)	644
AclWI	GGATC	4 cut(s)	235, 397, 423, 436
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	493, 704, 709
AgsI	TTSAA	6 cut(s)	10, 112, 317, 347, 365, 563
AjnI	CCWGG	2 cut(s)	173, 703
AluBI	AGCT	4 cut(s)	190, 300, 514, 751
AluI	AGCT	4 cut(s)	190, 300, 514, 751
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	49, 95
AlwI	GGATC	4 cut(s)	235, 397, 423, 436
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	2 cut(s)	79, 254
ApoI	RAATTY	1 cut(s)	558
Asp700I	GAANNNNTTC	2 cut(s)	116, 717
AspS9I	GGNCC	2 cut(s)	592, 635
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	635
AxyI	CCTNAGG	1 cut(s)	597
BamHI	GGATCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	66, 241
BccI	CCATC	2 cut(s)	233, 583
BciT130I	CCWGG	2 cut(s)	175, 705
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	49, 95
BfuAI	ACCTGC	1 cut(s)	682
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	3 cut(s)	80, 255, 645
BlsI	GCNGC	3 cut(s)	81, 256, 646
Bme1390I	CCNGG	2 cut(s)	175, 705
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	592, 635
BmiI	GGNNCC	5 cut(s)	430, 594, 656, 696, 714
BmrFI	CCNGG	2 cut(s)	175, 705
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	258, 625, 658, 703
BsaXI	ACNNNNNCTCC	6 cut(s)	286, 314, 316, 344, 646, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 704, 709
Bse21I	CCTNAGG	1 cut(s)	597
Bse3DI	GCAATG	2 cut(s)	269, 747
BseBI	CCWGG	2 cut(s)	175, 705
BseDI	CCNNGG	4 cut(s)	258, 625, 658, 703
BseGI	GGATG	2 cut(s)	594, 795
BseLI	CCNNNNNNNGG	3 cut(s)	493, 704, 709
BseMI	GCAATG	2 cut(s)	269, 747
BseMII	CTCAG	2 cut(s)	349, 588
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	66, 241
BseYI	CCCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	3 cut(s)	493, 704, 709
BsmAI	GTCTC	2 cut(s)	49, 95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	589
BsmI	GAATGC	2 cut(s)	116, 581
BsnI	GGCC	1 cut(s)	593
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	2 cut(s)	348, 589
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	5 cut(s)	430, 594, 656, 696, 714
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	4 cut(s)	235, 397, 423, 436
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	2 cut(s)	269, 747
BssECI	CCNNGG	4 cut(s)	258, 625, 658, 703
BssMI	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
BssT1I	CCWWGG	3 cut(s)	258, 625, 658
Bst2UI	CCWGG	2 cut(s)	175, 705
Bst4CI	ACNGT	2 cut(s)	670, 717
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	417, 516
BstDEI	CTNAG	2 cut(s)	335, 597
BstF5I	GGATG	2 cut(s)	594, 795
BstKTI	GATC	6 cut(s)	230, 280, 392, 431, 455, 506
BstMAI	GTCTC	2 cut(s)	49, 95
BstMBI	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 210, 515, 663
BstNI	CCWGG	2 cut(s)	175, 705
BstNSI	RCATGY	2 cut(s)	419, 729
BstSCI	CCNGG	2 cut(s)	173, 703
BstV1I	GCAGC	2 cut(s)	66, 241
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	3 cut(s)	227, 428, 503
BstXI	CCANNNNNNTGG	2 cut(s)	174, 632
BstYI	RGATCY	3 cut(s)	227, 428, 503
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	594, 795
BtsIMutI	CAGTG	1 cut(s)	666
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	417, 516
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	592, 635
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	416, 482, 726
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	335, 597
DpnI	GATC	6 cut(s)	229, 279, 391, 430, 454, 505
DpnII	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
Ecl136II	GAGCTC	1 cut(s)	751
Eco130I	CCWWGG	3 cut(s)	258, 625, 658
Eco24I	GRGCYC	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	751
Eco81I	CCTNAGG	1 cut(s)	597
EcoICRI	GAGCTC	1 cut(s)	751
EcoRII	CCWGG	2 cut(s)	173, 703
EcoT14I	CCWWGG	3 cut(s)	258, 625, 658
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	3 cut(s)	258, 625, 658
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	3 cut(s)	419, 485, 729
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	3 cut(s)	415, 481, 725
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	80, 255, 645
FokI	GGATG	2 cut(s)	601, 782
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	3 cut(s)	80, 255, 645
GluI	GCNGC	3 cut(s)	80, 255, 645
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	593
Hin1II	CATG	3 cut(s)	419, 485, 729
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	2 cut(s)	243, 457
HpaI	GTTAAC	1 cut(s)	684
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	499, 684
Hpy188I	TCNGA	2 cut(s)	238, 450
Hpy188III	TCNNGA	3 cut(s)	482, 586, 619
Hpy8I	GTNNAC	2 cut(s)	499, 684
HpyCH4III	ACNGT	2 cut(s)	670, 717
HpyCH4V	TGCA	9 cut(s)	152, 419, 509, 518, 571, 581, 611, 666, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 210, 515, 663
HpyF3I	CTNAG	2 cut(s)	335, 597
Hsp92II	CATG	3 cut(s)	419, 485, 729
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	684
Kzo9I	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
LmnI	GCTCC	5 cut(s)	297, 412, 654, 748, 756
Lsp1109I	GCAGC	2 cut(s)	66, 241
MalI	GATC	6 cut(s)	229, 279, 391, 430, 454, 505
MboI	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
MboII	GAAGA	3 cut(s)	22, 82, 470
MflI	RGATCY	3 cut(s)	227, 428, 503
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	3 cut(s)	107, 143, 558
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	9 cut(s)	39, 60, 288, 480, 592, 648, 765, 774, 775
MroXI	GAANNNNTTC	2 cut(s)	116, 717
MseI	TTAA	2 cut(s)	683, 732
MslI	CAYNNNNRTG	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	175, 705
Mva1269I	GAATGC	2 cut(s)	116, 581
MvaI	CCWGG	2 cut(s)	175, 705
MwoI	GCNNNNNNNGC	4 cut(s)	122, 210, 515, 663
NdeII	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
NlaIII	CATG	3 cut(s)	419, 485, 729
NlaIV	GGNNCC	5 cut(s)	430, 594, 656, 696, 714
NspI	RCATGY	2 cut(s)	419, 729
PaeI	GCATGC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	481
PctI	GAATGC	2 cut(s)	116, 581
PdmI	GAANNNNTTC	2 cut(s)	116, 717
PfeI	GAWTC	2 cut(s)	243, 457
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	81, 256, 646
Psp124BI	GAGCTC	1 cut(s)	753
Psp6I	CCWGG	2 cut(s)	173, 703
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	173, 703
PspN4I	GGNNCC	5 cut(s)	430, 594, 656, 696, 714
PspPI	GGNCC	2 cut(s)	592, 635
PsuI	RGATCY	3 cut(s)	227, 428, 503
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	683, 732
SatI	GCNGC	3 cut(s)	80, 255, 645
Sau3AI	GATC	6 cut(s)	227, 277, 389, 428, 452, 503
Sau96I	GGNCC	2 cut(s)	592, 635
ScrFI	CCNGG	2 cut(s)	175, 705
SduI	GDGCHC	1 cut(s)	753
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	3 cut(s)	107, 143, 558
SsiI	CCGC	1 cut(s)	644
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	2 cut(s)	173, 703
StyI	CCWWGG	3 cut(s)	258, 625, 658
TaaI	ACNGT	2 cut(s)	670, 717
TaqI	TCGA	3 cut(s)	381, 436, 455
TasI	AATT	3 cut(s)	107, 143, 558
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	243, 457
Tru1I	TTAA	2 cut(s)	683, 732
Tru9I	TTAA	2 cut(s)	683, 732
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	2 cut(s)	79, 254
TspDTI	ATGAA	6 cut(s)	235, 258, 470, 566, 570, 784
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	2 cut(s)	419, 729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648
XmnI	GAANNNNTTC	2 cut(s)	116, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.