Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

27330501 .. 27333219

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0249100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGACCACCAGCGCCACCACCACCACGACTACAGCCACTCCCACCACCACCACCACCACAGCCAGAGCAGCAGCCAGCACCATCACCACCGGCACAAGTCCCACTCCGACGGCAACCTCTTCTCTCTCTGTCCGTTCTGGCAGTCAGGGTCCCAAACGTCGTCGTCTTCCTCTTCGACTCAGATCCTACAGAGCGGCGTCGACGGATCGAAGTCGAAGCCCAAAACGGTGTCGTCCGTCGCGAGATCGCTGCTCCCGCCTCGGCGCCGGCTCCGGCTCGACCCTGCCAGCAAACTCTACTTCCCCTATGAACCTGGGAAACAAGTGAAGAGCGCAATTCGGTTGAAGAACAGTAGCAAGTCTCATGTAGCTTTCAAGTTTCAAACTACTGCACCGAAAAGCTGTTACATGCGTCCTCCGGGTGGTATTCTTGCTCCAGGAGAGAGCATAATTGCTACTGTGTTTAGGTTTGTGGAACAACCTGACAGCAATGAGAAAAATGTGGATCAGAAGACCAAGGTTAAGTTCAAAATTATGAGTCTGAAGGTGAAAGCTGAAACGGACTATGCTCCTGAGCTGTTTGATGAGCAAAAGGATCAAGTAGCAGTTGAGCGAATTTTGCGGGTTGTATTTTTAGATGCAGAGCACCCTACTCCTGCTCTAGAAAAACTGAAGAGGCAGTTGGCTGAAGCTGAGGCTGCACTCGAAGTGCGTAAGAAACCTCCCGCAGATTCAGGTCCTCGTGATGTTGGGGAGGGCCTTGTGATAGATGAATGGAAGGAGCGAAGGGAGAAATACCTGGCTCGGCAACAGGTTGAAGCAGCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

276

Amino Acids

31.23

Weight (kDa)

9.57

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	91 - 201	1.2e-24	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	242
AciI	CCGC	4 cut(s)	195, 257, 622, 726
AclWI	GGATC	4 cut(s)	178, 214, 513, 603
AcsI	RAATTY	1 cut(s)	615
AcuI	CTGAAG	3 cut(s)	563, 692, 708
AcyI	GRCGYC	2 cut(s)	198, 265
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	5 cut(s)	346, 376, 383, 529, 818
AjnI	CCWGG	3 cut(s)	313, 436, 798
AjuI	GAANNNNNNNTTGG	4 cut(s)	509, 541, 665, 697
AluBI	AGCT	5 cut(s)	371, 402, 554, 577, 692
AluI	AGCT	5 cut(s)	371, 402, 554, 577, 692
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	4 cut(s)	178, 214, 513, 603
AoxI	GGCC	1 cut(s)	757
ApeKI	GCWGC	5 cut(s)	69, 72, 250, 698, 821
ApoI	RAATTY	1 cut(s)	615
AspLEI	GCGC	3 cut(s)	15, 267, 335
AspS9I	GGNCC	4 cut(s)	4, 150, 737, 757
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	2 cut(s)	77, 559
AvaII	GGWCC	3 cut(s)	4, 150, 737
BanI	GGYRCC	1 cut(s)	264
BauI	CACGAG	1 cut(s)	741
BbsI	GAAGAC	2 cut(s)	159, 518
Bbv12I	GWGCWC	1 cut(s)	648
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	4 cut(s)	81, 84, 237, 685
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	3 cut(s)	315, 438, 800
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	2 cut(s)	31, 188
BfoI	RGCGCY	2 cut(s)	16, 268
BfuAI	ACCTGC	1 cut(s)	815
BisI	GCNGC	6 cut(s)	70, 73, 196, 251, 699, 822
BlsI	GCNGC	6 cut(s)	71, 74, 197, 252, 700, 823
Bme1390I	CCNGG	4 cut(s)	315, 420, 438, 800
Bme18I	GGWCC	3 cut(s)	4, 150, 737
BmgT120I	GGNCC	4 cut(s)	4, 150, 737, 757
BmiI	GGNNCC	4 cut(s)	151, 152, 266, 272
BmrFI	CCNGG	4 cut(s)	315, 420, 438, 800
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	2 cut(s)	159, 518
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	2 cut(s)	573, 693
BpuMI	CCSGG	1 cut(s)	420
BsaHI	GRCGYC	2 cut(s)	198, 265
BsaJI	CCNNGG	3 cut(s)	260, 314, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse118I	RCCGGY	2 cut(s)	90, 267
Bse3DI	GCAATG	1 cut(s)	496
BseBI	CCWGG	3 cut(s)	315, 438, 800
BseDI	CCNNGG	3 cut(s)	260, 314, 516
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	3 cut(s)	194, 564, 684
BseXI	GCAGC	4 cut(s)	81, 84, 237, 685
BsgI	GTGCAG	2 cut(s)	375, 684
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	759
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	4 cut(s)	91, 268, 274, 419
BslFI	GGGAC	2 cut(s)	85, 136
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	85, 136
BsnI	GGCC	1 cut(s)	759
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	5 cut(s)	183, 206, 245, 505, 595
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	4 cut(s)	195, 257, 622, 726
BspANI	GGCC	1 cut(s)	759
BspCNI	CTCAG	3 cut(s)	193, 565, 685
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	4 cut(s)	151, 152, 266, 272
BspMI	ACCTGC	1 cut(s)	815
BspPI	GGATC	4 cut(s)	178, 214, 513, 603
BspQI	GCTCTTC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	90, 267
BssAI	RCCGGY	2 cut(s)	90, 267
BssECI	CCNNGG	3 cut(s)	260, 314, 516
BssMI	GATC	5 cut(s)	183, 206, 245, 505, 595
BssNI	GRCGYC	2 cut(s)	198, 265
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	3 cut(s)	315, 438, 800
Bst4CI	ACNGT	3 cut(s)	229, 353, 460
Bst6I	CTCTTC	4 cut(s)	125, 178, 323, 668
BstACI	GRCGYC	2 cut(s)	198, 265
BstC8I	GCNNGC	3 cut(s)	77, 269, 289
BstDEI	CTNAG	3 cut(s)	180, 573, 693
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	2 cut(s)	16, 268
BstHHI	GCGC	3 cut(s)	15, 267, 335
BstKTI	GATC	5 cut(s)	186, 209, 248, 508, 598
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	5 cut(s)	183, 206, 245, 505, 595
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 256, 619, 698
BstNI	CCWGG	3 cut(s)	315, 438, 800
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	4 cut(s)	313, 418, 436, 798
BstSFI	CTRYAG	2 cut(s)	31, 188
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	4 cut(s)	81, 84, 237, 685
BstV2I	GAAGAC	2 cut(s)	159, 518
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	759
BtuMI	TCGCGA	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	3 cut(s)	77, 269, 289
CfoI	GCGC	3 cut(s)	15, 267, 335
Cfr10I	RCCGGY	2 cut(s)	90, 267
Cfr13I	GGNCC	4 cut(s)	4, 150, 737, 757
CseI	GACGC	2 cut(s)	187, 401
CviAII	CATG	2 cut(s)	365, 409
DdeI	CTNAG	3 cut(s)	180, 573, 693
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	5 cut(s)	185, 208, 247, 507, 597
DpnII	GATC	5 cut(s)	183, 206, 245, 505, 595
Eam1104I	CTCTTC	4 cut(s)	125, 178, 323, 668
EarI	CTCTTC	4 cut(s)	125, 178, 323, 668
Eco130I	CCWWGG	1 cut(s)	516
Eco47I	GGWCC	3 cut(s)	4, 150, 737
Eco57I	CTGAAG	3 cut(s)	563, 692, 708
EcoO109I	RGGNCCY	3 cut(s)	150, 737, 757
EcoRII	CCWGG	3 cut(s)	313, 436, 798
EcoT14I	CCWWGG	1 cut(s)	516
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	2 cut(s)	368, 412
FaiI	YATR	6 cut(s)	309, 366, 410, 449, 536, 567
FaqI	GGGAC	2 cut(s)	85, 136
FatI	CATG	2 cut(s)	364, 408
FauI	CCCGC	3 cut(s)	264, 615, 733
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	70, 73, 196, 251, 699, 822
Fsp4HI	GCNGC	6 cut(s)	70, 73, 196, 251, 699, 822
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	3 cut(s)	14, 266, 334
GluI	GCNGC	6 cut(s)	70, 73, 196, 251, 699, 822
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	2 cut(s)	16, 268
HaeIII	GGCC	1 cut(s)	759
HapII	CCGG	4 cut(s)	91, 268, 274, 419
HgaI	GACGC	2 cut(s)	187, 401
HhaI	GCGC	3 cut(s)	15, 267, 335
Hin1I	GRCGYC	2 cut(s)	198, 265
Hin1II	CATG	2 cut(s)	368, 412
Hin6I	GCGC	3 cut(s)	13, 265, 333
HinP1I	GCGC	3 cut(s)	13, 265, 333
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	178, 538, 731
HpaII	CCGG	4 cut(s)	91, 268, 274, 419
HphI	GGTGA	2 cut(s)	77, 559
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	4 cut(s)	109, 183, 510, 543
Hpy188III	TCNNGA	4 cut(s)	241, 572, 662, 743
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	6 cut(s)	113, 163, 166, 203, 206, 242
HpyAV	CCTTC	3 cut(s)	538, 772, 780
HpyCH4III	ACNGT	3 cut(s)	229, 353, 460
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	392, 641, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 256, 619, 698
HpyF3I	CTNAG	3 cut(s)	180, 573, 693
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	2 cut(s)	198, 265
Hsp92II	CATG	2 cut(s)	368, 412
HspAI	GCGC	3 cut(s)	13, 265, 333
KasI	GGCGCC	1 cut(s)	264
KflI	GGGWCCC	1 cut(s)	150
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Kzo9I	GATC	5 cut(s)	183, 206, 245, 505, 595
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	5 cut(s)	258, 276, 439, 574, 781
Lsp1109I	GCAGC	4 cut(s)	81, 84, 237, 685
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	185, 208, 247, 507, 597
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	5 cut(s)	183, 206, 245, 505, 595
MboII	GAAGA	7 cut(s)	112, 159, 165, 340, 358, 523, 685
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	4 cut(s)	336, 450, 531, 615
Mly113I	GGCGCC	1 cut(s)	265
MlyI	GAGTC	2 cut(s)	172, 547
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	9 cut(s)	128, 181, 270, 426, 669, 688, 732, 748, 750
MroNI	GCCGGC	1 cut(s)	267
MseI	TTAA	2 cut(s)	522, 829
MspI	CCGG	4 cut(s)	91, 268, 274, 419
MspR9I	CCNGG	4 cut(s)	315, 420, 438, 800
MvaI	CCWGG	3 cut(s)	315, 438, 800
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	69, 256, 619, 698
NaeI	GCCGGC	1 cut(s)	269
NarI	GGCGCC	1 cut(s)	265
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	5 cut(s)	183, 206, 245, 505, 595
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	368, 412
NlaIV	GGNNCC	4 cut(s)	151, 152, 266, 272
NmeAIII	GCCGAG	2 cut(s)	241, 784
NruI	TCGCGA	1 cut(s)	242
NspI	RCATGY	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PdiI	GCCGGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	731
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	6 cut(s)	71, 74, 197, 252, 700, 823
PleI	GAGTC	2 cut(s)	172, 546
PluTI	GGCGCC	1 cut(s)	268
PpsI	GAGTC	2 cut(s)	172, 546
PpuMI	RGGWCCY	2 cut(s)	150, 737
Psp5II	RGGWCCY	2 cut(s)	150, 737
Psp6I	CCWGG	3 cut(s)	313, 436, 798
PspGI	CCWGG	3 cut(s)	313, 436, 798
PspN4I	GGNNCC	4 cut(s)	151, 152, 266, 272
PspPI	GGNCC	4 cut(s)	4, 150, 737, 757
PspPPI	RGGWCCY	2 cut(s)	150, 737
PsuI	RGATCY	1 cut(s)	183
RruI	TCGCGA	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	522, 829
SatI	GCNGC	6 cut(s)	70, 73, 196, 251, 699, 822
Sau3AI	GATC	5 cut(s)	183, 206, 245, 505, 595
Sau96I	GGNCC	4 cut(s)	4, 150, 737, 757
SchI	GAGTC	2 cut(s)	172, 547
ScrFI	CCNGG	4 cut(s)	315, 420, 438, 800
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	2 cut(s)	31, 188
SfoI	GGCGCC	1 cut(s)	266
SgrDI	CGTCGACG	1 cut(s)	200
SinI	GGWCC	3 cut(s)	4, 150, 737
Sse9I	AATT	4 cut(s)	336, 450, 531, 615
SsiI	CCGC	4 cut(s)	195, 257, 622, 726
SspDI	GGCGCC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	4 cut(s)	313, 418, 436, 798
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	3 cut(s)	229, 353, 460
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	6 cut(s)	176, 201, 209, 215, 279, 705
TasI	AATT	4 cut(s)	336, 450, 531, 615
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	2 cut(s)	522, 829
Tru9I	TTAA	2 cut(s)	522, 829
TseI	GCWGC	5 cut(s)	69, 72, 250, 698, 821
TspDTI	ATGAA	2 cut(s)	324, 786
TspGWI	ACGGA	4 cut(s)	123, 219, 226, 575
VpaK11BI	GGWCC	3 cut(s)	4, 150, 737
XapI	RAATTY	1 cut(s)	615
XbaI	TCTAGA	1 cut(s)	661
XceI	RCATGY	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.