Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001851

Physical Location & Seq

Genomic Coordinates Reverse (-)

52653372 .. 52655074

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0426300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTGGAGGCGCGTGGCTTCACTCTCTCCTCTGATTTCCCACTCAAAACCCTCCATTCATAACCAGGCAGCTTCCACATTCAAGATTTGGGAATCACTTACCTCACAATCAGAGACAGTAACTCCGTCGAAAGCTGCTCCATTCATTACTTTTGTGTTGGGTGGCCCTGGTAGTGGGAAAGGTACTCAATGTGCTAAGATAGTTGAGGCATTTGGGTTCACTCATGTGAGTGCAGGGGATCTGTTGAGGAGGGAAATTGCTTCGAATAGCGCATATGGCGCTGTGATTCTTAGTACGATTAGAGAAGGAAAGATTGTTCCCTCTCAAGTGACGGTTCAGCTCATTCTAAAGGAGATGGAAGCGAGTGATAATTGCAAGTTTCTCATTGATGGGTTCCCTCGAAGCGAGGAGAACCGCAAGGCTTTTGAAGAAGTTATTGGAGCAGAACCGGATGTTGTACTTTTCTTCGACTGTCCTGAACAGGAGATGGTGAAGCGAGTGCTAAATCGTAATCAGGGACGAGTTGATGATAATATTGAAACAATCAAGAAACGGCTTGAAGTGTTTGATGAATTGAATTGGCCTATAGTCAATTACTACACACAGAGGGGAAAACTTCACAGGATCAATGCAGTGGGAACAGTAGATGAAATATTTGAAAAAGTTCGCCCAATTTTTGCTGCGCTGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

231

Amino Acids

25.77

Weight (kDa)

7.72

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	51 - 177	7.5e-06	AAA domain
ADK	PF00406	52 - 204	1.1e-45	Adenylate kinase
AAA_17	PF13207	53 - 183	1.2e-33	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001851)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0070000 Rorug01G0106000 Rorug01G0106000 Rorug01G0247000 Rorug01G0420200 Rorug01G0426300 Rorug01G0456700 Rorug02G0176200 Rorug02G0392200 Rorug02G0570300 Rorug02G0600900 Rorug03G0033500 Rorug03G0098300 Rorug03G0171600 Rorug03G0248300 Rorug03G0273700 Rorug03G0274400 Rorug04G0035800 Rorug04G0042000.1 Rorug04G0067800 Rorug04G0108900 Rorug04G0190500 Rorug04G0237000 Rorug04G0369100 Rorug05G0120700 Rorug05G0202200 Rorug05G0207300 Rorug05G0213800.1 Rorug05G0249100 Rorug05G0259700 Rorug05G0268600 Rorug05G0268700 Rorug05G0268700 Rorug05G0275000 Rorug05G0319500 Rorug05G0342900 Rorug05G0460500 Rorug06G0065200 Rorug06G0068600 Rorug06G0085300 Rorug06G0094800 Rorug06G0114300 Rorug06G0134600 Rorug06G0168500 Rorug06G0359000 Rorug06G0375200 Rorug07G0200500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	2 cut(s)	246, 632
AfaI	GTAC	3 cut(s)	184, 295, 459
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	6 cut(s)	82, 428, 539, 560, 577, 659
AjnI	CCWGG	2 cut(s)	63, 166
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AleI	CACNNNNGTG	1 cut(s)	224
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	71, 134, 340
AluI	AGCT	3 cut(s)	71, 134, 340
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	246, 632
AoxI	GGCC	2 cut(s)	163, 581
ApeKI	GCWGC	3 cut(s)	68, 134, 680
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	4 cut(s)	12, 272, 281, 685
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	502
AsuII	TTCGAA	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	80, 121, 667
BccI	CCATC	3 cut(s)	349, 383, 481
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	65, 168
BcoDI	GTCTC	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	3 cut(s)	69, 135, 681
BlpI	GCTNAGC	1 cut(s)	686
BlsI	GCNGC	3 cut(s)	70, 136, 682
Bme1390I	CCNGG	2 cut(s)	65, 168
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	65, 168
Bpu1102I	GCTNAGC	1 cut(s)	686
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	65, 168
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	677
BseRI	GAGGAG	3 cut(s)	18, 262, 422
BseXI	GCAGC	3 cut(s)	80, 121, 667
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	165, 583
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	165, 583
Bsp119I	TTCGAA	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	238, 624
Bsp1720I	GCTNAGC	1 cut(s)	686
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	2 cut(s)	165, 583
BspCNI	CTCAG	1 cut(s)	678
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	246, 632
BspT104I	TTCGAA	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	238, 624
Bst2UI	CCWGG	2 cut(s)	65, 168
Bst4CI	ACNGT	4 cut(s)	118, 334, 473, 643
BstBI	TTCGAA	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	195, 290, 686
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	4 cut(s)	12, 272, 281, 685
BstKTI	GATC	2 cut(s)	241, 627
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	238, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 278
BstNI	CCWGG	2 cut(s)	65, 168
BstSCI	CCNGG	2 cut(s)	63, 166
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	80, 121, 667
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	165, 583
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	639
CfoI	GCGC	4 cut(s)	12, 272, 281, 685
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	183, 294, 458
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	8 cut(s)	17, 71, 134, 165, 340, 422, 556, 583
CviKI_1	RGCY	8 cut(s)	17, 71, 134, 165, 340, 422, 556, 583
CviQI	GTAC	3 cut(s)	183, 294, 458
DdeI	CTNAG	3 cut(s)	195, 290, 686
DpnI	GATC	2 cut(s)	240, 626
DpnII	GATC	2 cut(s)	238, 624
EcoRII	CCWGG	2 cut(s)	63, 166
FaeI	CATG	1 cut(s)	227
FaiI	YATR	5 cut(s)	60, 225, 274, 276, 587
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	1 cut(s)	223
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	69, 135, 681
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	69, 135, 681
GlaI	GCGC	4 cut(s)	11, 271, 280, 684
GluI	GCNGC	3 cut(s)	69, 135, 681
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	165, 583
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	4 cut(s)	12, 272, 281, 685
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	4 cut(s)	10, 270, 279, 683
HinP1I	GCGC	4 cut(s)	10, 270, 279, 683
HinfI	GANTC	2 cut(s)	92, 286
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	33, 112
Hpy188III	TCNNGA	3 cut(s)	82, 476, 547
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	4 cut(s)	118, 334, 473, 643
HpyCH4V	TGCA	3 cut(s)	233, 375, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 278
HpyF3I	CTNAG	3 cut(s)	195, 290, 686
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	4 cut(s)	10, 270, 279, 683
Kzo9I	GATC	2 cut(s)	238, 624
LmnI	GCTCC	2 cut(s)	142, 440
Lsp1109I	GCAGC	3 cut(s)	80, 121, 667
MaeIII	GTNAC	2 cut(s)	118, 328
MalI	GATC	2 cut(s)	240, 626
MboI	GATC	2 cut(s)	238, 624
MboII	GAAGA	2 cut(s)	440, 457
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	6 cut(s)	255, 370, 572, 577, 592, 672
MroXI	GAANNNNTTC	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	224, 228
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	65, 168
MvaI	CCWGG	2 cut(s)	65, 168
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	276, 278
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	238, 624
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	263
OliI	CACNNNNGTG	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	92, 286
PkrI	GCNGC	3 cut(s)	70, 136, 682
Psp6I	CCWGG	2 cut(s)	63, 166
PspGI	CCWGG	2 cut(s)	63, 166
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	3 cut(s)	184, 295, 459
RsaNI	GTAC	3 cut(s)	183, 294, 458
RseI	CAYNNNNRTG	2 cut(s)	224, 228
SatI	GCNGC	3 cut(s)	69, 135, 681
Sau3AI	GATC	2 cut(s)	238, 624
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	65, 168
SetI	ASST	5 cut(s)	73, 104, 136, 184, 342
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	224, 228
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	6 cut(s)	255, 370, 572, 577, 592, 672
SsiI	CCGC	1 cut(s)	415
SspI	AATATT	2 cut(s)	535, 654
StyD4I	CCNGG	2 cut(s)	63, 166
TaaI	ACNGT	4 cut(s)	118, 334, 473, 643
TaqI	TCGA	4 cut(s)	128, 263, 400, 468
TasI	AATT	6 cut(s)	255, 370, 572, 577, 592, 672
TatI	WGTACW	1 cut(s)	457
TfiI	GAWTC	2 cut(s)	92, 286
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	3 cut(s)	68, 134, 680
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	4 cut(s)	47, 133, 585, 663
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.